PPFIBP1

General Information

Gene Name       : PPFIBP1
Gene ID             : ENSG00000110841.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PPFIBP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PPFIBP1ENSG00000110841.132.992.372.68ENCSR000AEF
HepG2PPFIBP1ENSG00000110841.1310.0514.6212.34ENCSR985KAT
K562PPFIBP1ENSG00000110841.131.201.231.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PPFIBP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PPFIBP1 RNA is bound by 8 proteins.  







eCLIP assay for PPFIBP1 is not avaliable on ENCORE database.





8 proteins are bound to PPFIBP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr122780066127800712+3'-UTR,CDS,intron-Distal,intron-Proximal4.844365.70640HepG2BCLAF1
chr122778629527786390+3'-UTR,CDS,intron-Distal3.906353.14999HepG2GRWD1
chr122778630127786394+3'-UTR,CDS,intron-Distal,intron-Proximal6.0851513.23445HepG2BCLAF1
chr122779906027799084+3'-UTR,CDS,intron-Proximal4.111843.45943HepG2BCLAF1
chr122779904627799083+3'-UTR,CDS,intron-Proximal3.204653.54620HepG2LIN28B
chr122767709427677238+5'-UTR,intron-Distal5.177558.33105HepG2NCBP2
chr122767717127677237+5'-UTR,intron-Distal3.361226.67587HepG2DDX3X
chr122781730327817376+CDS,intron-Proximal4.076284.01763HepG2GRWD1
chr122782535827825414+CDS,intron-Proximal3.810053.68471HepG2BCLAF1
chr122781381627813879+CDS,intron-Proximal3.906353.12746HepG2GRWD1
chr122782445527824480+CDS,intron-Proximal3.991343.06595HepG2BCLAF1
chr122784552227845556+CDS,intron-Proximal3.800624.76554HepG2BCLAF1
chr122780769027807741+CDS4.630114.70478HepG2BCLAF1
chr122782948127829537+CDS,intron-Proximal3.274864.74886HepG2BCLAF1
chr122778791127788051+CDS,intron-Distal,intron-Proximal4.709016.73025HepG2GRWD1
chr122784483027844865+CDS,intron-Proximal4.636094.34038HepG2BCLAF1
chr122783245627832573+CDS,intron-Proximal4.518575.64460HepG2GRWD1
chr122784469927844799+CDS3.643345.15776HepG2BCLAF1
chr122780960127809664+CDS,intron-Proximal3.003983.48031HepG2BCLAF1
chr122781382827813874+CDS5.026885.23259HepG2BCLAF1
chr122783000027830117+CDS,intron-Distal,intron-Proximal4.228593.71567HepG2RBFOX2
chr122784125427841351+CDS3.930533.79347HepG2GRWD1
chr122778793627788041+CDS,intron-Distal5.242597.04013HepG2BCLAF1
chr122784555627845588+CDS4.630114.70478HepG2BCLAF1
chr122778784027787891+CDS,intron-Distal,intron-Proximal4.665305.37137HepG2BCLAF1
chr122781729927817370+CDS4.359828.41475HepG2BCLAF1
chr122773705427737157+intron-Distal,intron-Proximal4.285194.45537HepG2HNRNPL
chr122777291227773010+intron-Distal4.075443.98095HepG2HNRNPL
chr122775244427752555+intron-Distal,intron-Proximal5.6198020.47257HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PPFIBP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PPFIBP1 is not available on ENCORE database.

  • 71 RBPs can affect the levels of PPFIBP1.  








The Knockdown/knockout RNA-Seq assay for PPFIBP1 is not available on ENCORE database.





71 RBPs can affect the gene expression of PPFIBP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PPFIBP1ENSG00000110841.9937.10720641.278300.547205.065103.65720HepG2AATF
PPFIBP1ENSG00000110841.91417.53240767.465400.8851024.7350023.32940HepG2ACO1
PPFIBP1ENSG00000110841.9577.34850791.97050-0.456003.315502.23170HepG2ADAR
PPFIBP1ENSG00000110841.91742.746801106.624600.655106.043505.29180HepG2AKAP1
PPFIBP1ENSG00000110841.91153.23380771.146600.580509.519708.20060HepG2AKAP8L
PPFIBP1ENSG00000110841.91637.930001115.545700.5540010.360509.17180HepG2AUH
PPFIBP1ENSG00000110841.9555.32200753.88950-0.441002.171501.34480HepG2BCCIP
PPFIBP1ENSG00000110841.91086.57870858.560300.339702.990002.19030HepG2CALR
PPFIBP1ENSG00000110841.9641.12470884.69030-0.464603.499202.73510HepG2CPSF6
PPFIBP1ENSG00000110841.9639.40230812.14580-0.345002.958401.90630HepG2YBX3
PPFIBP1ENSG00000110841.91716.29950932.430300.8801022.1629020.70210HepG2CELF1
PPFIBP1ENSG00000110841.9865.457701002.73810-0.212402.152401.48570HepG2DAZAP1
PPFIBP1ENSG00000110841.9460.77640693.58090-0.590003.084501.73000HepG2DDX27
PPFIBP1ENSG00000110841.91063.97400741.207900.521403.902202.99900HepG2DDX55
PPFIBP1ENSG00000110841.91164.61140910.603600.354902.021301.48600HepG2DDX6
PPFIBP1ENSG00000110841.9641.60840790.41230-0.300903.003602.32910HepG2DNAJC2
PPFIBP1ENSG00000110841.9978.89800651.608700.587104.101002.74000HepG2AGO1
PPFIBP1ENSG00000110841.91130.78570609.635300.8912011.081109.40450HepG2EIF3D
PPFIBP1ENSG00000110841.91525.68260941.915100.695705.270904.34210HepG2EIF4B
PPFIBP1ENSG00000110841.91576.982201280.804300.300003.588802.91760HepG2ETF1
PPFIBP1ENSG00000110841.91979.26690882.471301.1652017.7828016.12420HepG2FIP1L1
PPFIBP1ENSG00000110841.91223.72210900.232600.442802.409401.36310HepG2FUS
PPFIBP1ENSG00000110841.9753.054801002.90000-0.413402.574901.95450HepG2GPKOW
PPFIBP1ENSG00000110841.9904.74520732.764800.304102.907201.91000HepG2HDGF
PPFIBP1ENSG00000110841.9495.52430805.13250-0.700307.143206.17800HepG2HNRNPA1
PPFIBP1ENSG00000110841.91138.49930921.474300.305002.813801.87390HepG2HNRNPA2B1
PPFIBP1ENSG00000110841.9617.02920895.54830-0.537404.779303.88630HepG2HNRNPC
PPFIBP1ENSG00000110841.9650.66450976.41310-0.585604.931004.06330HepG2MAGOH
PPFIBP1ENSG00000110841.9992.99390638.067700.638003.759302.53920HepG2METAP2
PPFIBP1ENSG00000110841.91032.29210714.238400.531305.334804.24080HepG2MSI2
PPFIBP1ENSG00000110841.9780.32190571.902400.448203.129602.27570HepG2PRPF8
PPFIBP1ENSG00000110841.91187.93060863.133500.460706.291205.53160HepG2PTBP1
PPFIBP1ENSG00000110841.91168.105801007.475200.213301.859501.35270HepG2PUM1
PPFIBP1ENSG00000110841.91370.934701006.768900.445304.777403.90760HepG2PUM2
PPFIBP1ENSG00000110841.9963.71890781.726600.301803.078802.43680HepG2PUS1
PPFIBP1ENSG00000110841.92549.62930822.519201.6321020.0132018.28490HepG2RAVER1
PPFIBP1ENSG00000110841.91416.84670959.969700.561507.987106.63530HepG2RBM15
PPFIBP1ENSG00000110841.91785.583401070.513600.7380015.7986014.76710HepG2RBM22
PPFIBP1ENSG00000110841.91284.48420848.399000.598307.447806.38610HepG2RBM25
PPFIBP1ENSG00000110841.9946.930801361.49290-0.523903.453802.55940HepG2RPS3A
PPFIBP1ENSG00000110841.91079.88040565.741700.9326010.646109.25700HepG2RRP9
PPFIBP1ENSG00000110841.9661.96030792.26090-0.259202.147201.56700HepG2SAFB2
PPFIBP1ENSG00000110841.92835.133701209.102601.2294063.4844061.90390HepG2SRFBP1
PPFIBP1ENSG00000110841.91513.52820937.991400.6902014.7850013.87740HepG2SRSF1
PPFIBP1ENSG00000110841.91136.91230937.051400.278802.485501.88740HepG2SRSF5
PPFIBP1ENSG00000110841.91095.48250763.098900.521508.103107.24720HepG2SRSF9
PPFIBP1ENSG00000110841.91418.295301065.734500.412206.099605.24180HepG2SUCLG1
PPFIBP1ENSG00000110841.91058.26290737.895900.520103.993403.20330HepG2SUPV3L1
PPFIBP1ENSG00000110841.91341.63290843.080600.6701011.4949010.47550HepG2TAF15
PPFIBP1ENSG00000110841.9992.14470774.700200.356803.028302.15910HepG2TIA1
PPFIBP1ENSG00000110841.9739.88410872.16460-0.237301.937901.44960HepG2TRIM56
PPFIBP1ENSG00000110841.91277.09660754.910400.758408.994507.85510HepG2U2AF1
PPFIBP1ENSG00000110841.9459.37010675.77880-0.556902.524401.56850HepG2UPF2
PPFIBP1ENSG00000110841.91146.92300808.662200.504102.777201.50660HepG2XRCC5
PPFIBP1ENSG00000110841.9436.89430726.37660-0.733405.836804.79580HepG2XRN2
PPFIBP1ENSG00000110841.91006.48990700.675100.522408.247507.19180HepG2ZC3H8
PPFIBP1ENSG00000110841.91123.37060876.019900.358704.916504.24030HepG2ZNF622
PPFIBP1ENSG00000110841.996.4246049.752900.954502.835301.50410K562BCCIP
PPFIBP1ENSG00000110841.9163.7214090.423600.856402.868501.78220K562CNOT7
PPFIBP1ENSG00000110841.940.3998077.22230-0.934702.355901.61840K562EIF3G
PPFIBP1ENSG00000110841.9108.3715058.436900.890902.762001.84890K562FTO
PPFIBP1ENSG00000110841.9114.1277042.360901.429705.834704.99870K562HNRNPC
PPFIBP1ENSG00000110841.998.2566053.155900.886202.842301.93720K562HNRNPU
PPFIBP1ENSG00000110841.9103.9294040.920401.344605.385703.35020K562LARP7
PPFIBP1ENSG00000110841.9158.3332063.150701.326007.009705.58220K562METAP2
PPFIBP1ENSG00000110841.9202.48440106.743800.923604.265602.86650K562MSI2
PPFIBP1ENSG00000110841.9147.0409065.429101.168105.284703.91870K562PCBP2
PPFIBP1ENSG00000110841.9146.9819067.020401.132904.677103.59670K562PCBP3
PPFIBP1ENSG00000110841.9107.7785051.413801.067703.979303.01250K562POLR2G
PPFIBP1ENSG00000110841.9180.8285049.308601.8746011.308709.78570K562PRPF8
PPFIBP1ENSG00000110841.9191.36710109.266600.808403.063302.20580K562PUF60
PPFIBP1ENSG00000110841.9264.72330113.873001.217008.807607.06820K562PUM2
PPFIBP1ENSG00000110841.9117.3446050.227901.224103.257102.36950K562RPS19
PPFIBP1ENSG00000110841.992.4481042.195501.131503.334801.59860K562SERBP1
PPFIBP1ENSG00000110841.9251.5259061.527202.0313016.0472013.66510K562SF3B1
PPFIBP1ENSG00000110841.9188.8355070.057201.430409.391508.09910K562SRSF1
PPFIBP1ENSG00000110841.9132.0040054.183501.284605.773604.07560K562U2AF1
PPFIBP1ENSG00000110841.999.5595055.935500.831702.769101.96490K562U2AF2
PPFIBP1ENSG00000110841.9170.8142091.504300.900403.605802.22610K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PPFIBP1 is not available on ENCORE database.





5 RBPs can affect the splicing of PPFIBP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPPFIBP1ENSG00000110841.9chr12+2782999627830029278293602782953227832421278325720.233000.000100.06897includedHepG2NKRF
SEPPFIBP1ENSG00000110841.9chr12+2782999627830029278293602782953227832421278325720.364000.000010.00021includedHepG2U2AF1
SEPPFIBP1ENSG00000110841.9chr12+2782999627830029278293602782953227832421278325720.185000.001180.08306includedHepG2TBRG4
SEPPFIBP1ENSG00000110841.9chr12+2782999627830029278293602782953227832421278325720.504000.000080.03940includedHepG2BCCIP
SEPPFIBP1ENSG00000110841.9chr12+2782999627830029278293602782953227832421278325720.397000.000200.05165includedHepG2EIF3D

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PPFIBP1 is not avaliable on ENCORE database.