LRRC27

General Information

Gene Name       : LRRC27
Gene ID             : ENSG00000148814.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRRC27)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRRC27ENSG00000148814.174.073.133.60ENCSR000AEF
HepG2LRRC27ENSG00000148814.172.683.683.18ENCSR985KAT
K562LRRC27ENSG00000148814.171.910.931.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRRC27 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRRC27 RNA is bound by 11 proteins.  







eCLIP assay for LRRC27 is not avaliable on ENCORE database.





11 proteins are bound to LRRC27 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10134161826134161896+CDS,intron-Proximal4.844674.35676HepG2PRPF8
chr10134177864134177981+intron-Distal6.0378016.61598HepG2GTF2F1
chr10134178273134178327+intron-Distal5.644519.70777K562AGGF1
chr10134177869134177982+intron-Distal4.464288.83217HepG2EIF3D
chr10134177862134177920+intron-Distal4.7423831.89177HepG2AGGF1
chr10134178265134178331+intron-Distal5.7635913.49782HepG2XPO5
chr10134177919134178008+intron-Distal3.5137013.95397HepG2HNRNPL
chr10134177878134178004+intron-Distal3.265165.89157HepG2AKAP1
chr10134177862134177995+intron-Distal6.2437032.31088HepG2LARP4
chr10134177920134177997+intron-Distal5.2247158.94386HepG2AGGF1
chr10134178252134178334+intron-Distal4.468639.46623HepG2HNRNPL
chr10134178252134178343+intron-Distal5.7056334.96331HepG2AGGF1
chr10134178271134178339+intron-Distal4.205643.29554HepG2GTF2F1
chr10134177863134177916+intron-Distal7.2480418.97267HepG2XPO5
chr10134177864134177998+intron-Distal4.755997.25699HepG2YBX3
chr10134177876134177979+intron-Distal5.8221611.02331HepG2CDC40
chr10134177860134177919+intron-Distal3.837848.64056HepG2HNRNPL
chr10134177872134177988+intron-Distal3.975613.00640HepG2ZC3H11A
chr10134178000134178035+intron-Distal4.831185.72900K562AGGF1
chr10134177916134177993+intron-Distal8.2823339.64871HepG2XPO5
chr10134178268134178326+intron-Distal4.637553.95534HepG2CDC40
chr10134177871134178000+intron-Distal7.6314842.82595K562AGGF1
chr10134178276134178327+intron-Distal5.290587.86232HepG2LARP4
chr10134178049134178070+intron-Distal4.675315.63915HepG2AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRRC27 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRRC27 is not available on ENCORE database.

  • 17 RBPs can affect the levels of LRRC27.  








The Knockdown/knockout RNA-Seq assay for LRRC27 is not available on ENCORE database.





17 RBPs can affect the gene expression of LRRC27 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRRC27ENSG00000148814.1387.7663044.787900.970502.329801.63140HepG2CNOT7
LRRC27ENSG00000148814.1367.35490125.00020-0.892102.895702.26520HepG2DDX6
LRRC27ENSG00000148814.1364.63130129.28110-1.000203.087402.36390HepG2EIF4B
LRRC27ENSG00000148814.1386.96070134.56420-0.629902.477201.83560HepG2HNRNPL
LRRC27ENSG00000148814.13244.90600147.602100.730404.255003.64810HepG2RBM22
LRRC27ENSG00000148814.1393.2116044.980501.051103.025902.19040HepG2RPS3A
LRRC27ENSG00000148814.1373.28980129.58810-0.822202.911702.21890HepG2SF3A3
LRRC27ENSG00000148814.13237.44840166.716400.510102.566202.07700HepG2SRFBP1
LRRC27ENSG00000148814.1370.46830110.95550-0.654901.817601.30970HepG2UTP3
LRRC27ENSG00000148814.1372.70240126.39540-0.797903.274102.69410HepG2ZNF622
LRRC27ENSG00000148814.1322.5786052.54300-1.218502.461701.92090K562AGGF1
LRRC27ENSG00000148814.1350.8568022.297701.189402.418201.65020K562EIF4A3
LRRC27ENSG00000148814.1357.4647024.992701.201102.398601.65440K562HSPD1
LRRC27ENSG00000148814.1333.5570065.00120-0.953902.257001.44900K562MBNL1
LRRC27ENSG00000148814.1310.9194045.56090-2.060903.668302.61870K562NAA15
LRRC27ENSG00000148814.1322.0441054.22590-1.298602.410401.89580K562PUS1
LRRC27ENSG00000148814.1324.9387052.83030-1.083002.140901.60700K562RBM15
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRRC27 is not available on ENCORE database.





3 RBPs can affect the splicing of LRRC27 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELRRC27ENSG00000148814.13chr10+134155716134155775134151068134151199134158001134158154-0.615000.002170.05015excludedHepG2HNRNPK
SELRRC27ENSG00000148814.13chr10+1341624661341625611341616951341618601341651101341652570.415000.002910.06995includedHepG2SF3A3
SELRRC27ENSG00000148814.13chr10+1341624661341625611341616951341618601341651101341652570.512000.001100.07239includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LRRC27 is not avaliable on ENCORE database.