LRRC27

General Information

Gene Name : LRRC27
Gene ID : ENSG00000148814.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LRRC27)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LRRC27	ENSG00000148814.17	4.07	3.13	3.60	ENCSR000AEF
HepG2	LRRC27	ENSG00000148814.17	2.68	3.68	3.18	ENCSR985KAT
K562	LRRC27	ENSG00000148814.17	1.91	0.93	1.42	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LRRC27 is not avaliable on ENCORE database.

Proteins bound to RNA

LRRC27 RNA is bound by 11 proteins.

CanvasJS.com

eCLIP assay for LRRC27 is not avaliable on ENCORE database.

11 proteins are bound to LRRC27 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	134177920	134177997	+	intron-Distal	5.22471	58.94386	HepG2	AGGF1
chr10	134177871	134178000	+	intron-Distal	7.63148	42.82595	K562	AGGF1
chr10	134177916	134177993	+	intron-Distal	8.28233	39.64871	HepG2	XPO5
chr10	134178252	134178343	+	intron-Distal	5.70563	34.96331	HepG2	AGGF1
chr10	134177862	134177995	+	intron-Distal	6.24370	32.31088	HepG2	LARP4
chr10	134177862	134177920	+	intron-Distal	4.74238	31.89177	HepG2	AGGF1
chr10	134177863	134177916	+	intron-Distal	7.24804	18.97267	HepG2	XPO5
chr10	134177864	134177981	+	intron-Distal	6.03780	16.61598	HepG2	GTF2F1
chr10	134177919	134178008	+	intron-Distal	3.51370	13.95397	HepG2	HNRNPL
chr10	134178265	134178331	+	intron-Distal	5.76359	13.49782	HepG2	XPO5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 24 entries

eCLIP assay for LRRC27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LRRC27 is not available on ENCORE database.
17 RBPs can affect the levels of LRRC27.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LRRC27 is not available on ENCORE database.

17 RBPs can affect the gene expression of LRRC27 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LRRC27	ENSG00000148814.13	244.90600	147.60210	0.73040	4.25500	3.64810	HepG2	RBM22
LRRC27	ENSG00000148814.13	72.70240	126.39540	-0.79790	3.27410	2.69410	HepG2	ZNF622
LRRC27	ENSG00000148814.13	10.91940	45.56090	-2.06090	3.66830	2.61870	K562	NAA15
LRRC27	ENSG00000148814.13	64.63130	129.28110	-1.00020	3.08740	2.36390	HepG2	EIF4B
LRRC27	ENSG00000148814.13	67.35490	125.00020	-0.89210	2.89570	2.26520	HepG2	DDX6
LRRC27	ENSG00000148814.13	73.28980	129.58810	-0.82220	2.91170	2.21890	HepG2	SF3A3
LRRC27	ENSG00000148814.13	93.21160	44.98050	1.05110	3.02590	2.19040	HepG2	RPS3A
LRRC27	ENSG00000148814.13	237.44840	166.71640	0.51010	2.56620	2.07700	HepG2	SRFBP1
LRRC27	ENSG00000148814.13	22.57860	52.54300	-1.21850	2.46170	1.92090	K562	AGGF1
LRRC27	ENSG00000148814.13	22.04410	54.22590	-1.29860	2.41040	1.89580	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LRRC27 is not available on ENCORE database.

3 RBPs can affect the splicing of LRRC27 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LRRC27	ENSG00000148814.13	chr10	+	134162466	134162561	134161695	134161860	134165110	134165257	0.51200	0.00110	0.07239	included	HepG2	TIAL1
SE	LRRC27	ENSG00000148814.13	chr10	+	134155716	134155775	134151068	134151199	134158001	134158154	-0.61500	0.00217	0.05015	excluded	HepG2	HNRNPK
SE	LRRC27	ENSG00000148814.13	chr10	+	134162466	134162561	134161695	134161860	134165110	134165257	0.41500	0.00291	0.06995	included	HepG2	SF3A3

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LRRC27

General Information

Functions

Localization

Domains (AlphaFold: LRRC27)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LRRC27 is not avaliable on ENCORE database.

11 proteins are bound to LRRC27 RNA:

eCLIP assay for LRRC27 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LRRC27 is not available on ENCORE database.

17 RBPs can affect the gene expression of LRRC27 :

The Knockdown/knockout RNA-Seq assay for LRRC27 is not available on ENCORE database.

3 RBPs can affect the splicing of LRRC27 :

The Knockdown/knockout RNA-Seq assay for LRRC27 is not avaliable on ENCORE database.