RP11-640M9.2

General Information

Gene Name : RP11-640M9.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-640M9.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-640M9.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-640M9.2 RNA is bound by 8 proteins.

eCLIP assay for RP11-640M9.2 is not avaliable on ENCORE database.

8 proteins are bound to RP11-640M9.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	144616507	144616583	+	intron-Distal	5.14687	7.27974	HepG2	QKI
chr1	144616507	144616584	+	intron-Distal	5.06684	5.61339	K562	QKI
chr1	144594072	144594127	+	intron-Distal	3.44520	3.09172	K562	XRCC6
chr1	144594174	144594215	+	intron-Distal	4.25661	4.36329	HepG2	PRPF4
chr1	144594495	144594526	+	intron-Distal,intron-Proximal	4.73482	4.86944	K562	AQR
chr1	144594092	144594152	+	intron-Distal	3.45840	6.83875	HepG2	EFTUD2
chr1	144594112	144594191	+	intron-Distal	3.52086	3.41960	K562	GTF2F1
chr1	144594091	144594159	+	intron-Distal	3.57699	7.25168	HepG2	PRPF4
chr1	144593933	144593973	+	intron-Proximal	5.48607	13.23057	K562	AQR
chr1	144593934	144593980	+	intron-Proximal	4.89122	4.68690	HepG2	PRPF8
chr1	144593973	144593980	+	intron-Proximal	6.27957	13.18785	K562	AQR
chr1	144598712	144598781	+	intron-Proximal	4.94326	5.56813	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-640M9.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-640M9.2 is not available on ENCORE database.
55 RBPs can affect the levels of RP11-640M9.2.

The Knockdown/knockout RNA-Seq assay for RP11-640M9.2 is not available on ENCORE database.

55 RBPs can affect the gene expression of RP11-640M9.2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-640M9.2	ENSG00000225241.3	375.40020	261.75480	0.52010	1.90570	1.31640	HepG2	AUH
RP11-640M9.2	ENSG00000225241.3	221.37890	151.46310	0.54750	2.11210	1.50210	HepG2	CPSF6
RP11-640M9.2	ENSG00000225241.3	239.92200	136.91050	0.80920	3.00400	2.20400	HepG2	DDX55
RP11-640M9.2	ENSG00000225241.3	195.65470	128.70940	0.60410	2.21060	1.67440	HepG2	EIF2S1
RP11-640M9.2	ENSG00000225241.3	211.86000	142.22540	0.57480	2.16250	1.59470	HepG2	EIF4A3
RP11-640M9.2	ENSG00000225241.3	229.97670	138.50240	0.73150	2.74640	2.05920	HepG2	EIF4B
RP11-640M9.2	ENSG00000225241.3	346.67630	246.11170	0.49420	2.05590	1.38710	HepG2	FIP1L1
RP11-640M9.2	ENSG00000225241.3	201.91170	103.44690	0.96470	5.35680	4.27320	HepG2	FUBP3
RP11-640M9.2	ENSG00000225241.3	226.50390	134.86040	0.74800	3.42300	2.64930	HepG2	HNRNPK
RP11-640M9.2	ENSG00000225241.3	243.13810	135.31940	0.84530	4.30170	3.47630	HepG2	IGF2BP2
RP11-640M9.2	ENSG00000225241.3	246.04980	136.12270	0.85390	3.89450	2.68740	HepG2	KHSRP
RP11-640M9.2	ENSG00000225241.3	238.77090	147.78370	0.69200	3.02170	2.36160	HepG2	NCBP2
RP11-640M9.2	ENSG00000225241.3	202.81140	131.58590	0.62400	2.50770	1.81760	HepG2	PABPC4
RP11-640M9.2	ENSG00000225241.3	228.00030	119.33260	0.93390	6.48030	5.61140	HepG2	PCBP1
RP11-640M9.2	ENSG00000225241.3	214.77260	121.43310	0.82250	4.79790	4.12040	HepG2	PTBP1
RP11-640M9.2	ENSG00000225241.3	129.65640	197.93350	-0.61030	2.41830	1.85530	HepG2	PUF60
RP11-640M9.2	ENSG00000225241.3	281.12180	209.96530	0.42090	2.03780	1.45610	HepG2	PUM2
RP11-640M9.2	ENSG00000225241.3	245.59340	131.49860	0.90110	5.64780	4.80200	HepG2	QKI
RP11-640M9.2	ENSG00000225241.3	197.27300	119.34970	0.72490	3.43350	2.68870	HepG2	RBM25
RP11-640M9.2	ENSG00000225241.3	190.65970	135.13700	0.49650	1.89980	1.43250	HepG2	NELFE
RP11-640M9.2	ENSG00000225241.3	182.16570	125.87340	0.53320	2.12360	1.57440	HepG2	RECQL
RP11-640M9.2	ENSG00000225241.3	241.77560	126.41370	0.93540	6.21050	5.38410	HepG2	SF3B4
RP11-640M9.2	ENSG00000225241.3	252.13780	189.80740	0.40960	2.11130	1.48410	HepG2	SLBP
RP11-640M9.2	ENSG00000225241.3	434.07360	283.71910	0.61340	5.15600	4.53130	HepG2	SRFBP1
RP11-640M9.2	ENSG00000225241.3	197.59160	107.35660	0.88000	5.49700	4.76480	HepG2	SRSF9
RP11-640M9.2	ENSG00000225241.3	303.80630	222.26160	0.45080	2.00220	1.45680	HepG2	SUCLG1
RP11-640M9.2	ENSG00000225241.3	209.67830	118.62130	0.82170	4.56640	3.87420	HepG2	TAF15
RP11-640M9.2	ENSG00000225241.3	206.86830	108.98010	0.92450	5.66280	4.47800	HepG2	TIA1
RP11-640M9.2	ENSG00000225241.3	421.88320	210.54200	1.00260	7.94780	6.88580	HepG2	U2AF1
RP11-640M9.2	ENSG00000225241.3	403.07450	177.88610	1.18000	3.39490	2.29770	HepG2	U2AF2
RP11-640M9.2	ENSG00000225241.3	346.93690	204.70920	0.76100	4.13150	3.09910	HepG2	UBE2L3
RP11-640M9.2	ENSG00000225241.3	139.55410	200.23410	-0.52090	2.30500	1.68480	HepG2	ZC3H8
RP11-640M9.2	ENSG00000225241.3	230.88510	351.62180	-0.60680	3.44050	2.05970	K562	ABCF1
RP11-640M9.2	ENSG00000225241.3	484.54140	650.53770	-0.42500	2.87020	1.86580	K562	AKAP8
RP11-640M9.2	ENSG00000225241.3	511.44700	646.34970	-0.33770	2.35370	1.51800	K562	ATP5C1
RP11-640M9.2	ENSG00000225241.3	535.17940	707.46080	-0.40260	3.07330	1.82110	K562	CCDC124
RP11-640M9.2	ENSG00000225241.3	497.09860	711.16290	-0.51660	4.63250	3.36000	K562	CELF1
RP11-640M9.2	ENSG00000225241.3	293.33100	470.58680	-0.68190	6.98010	6.01050	K562	DDX47
RP11-640M9.2	ENSG00000225241.3	126.36160	218.55240	-0.79040	3.24060	1.84690	K562	EEF2
RP11-640M9.2	ENSG00000225241.3	300.30300	211.19240	0.50780	2.51650	1.64850	K562	EFTUD2
RP11-640M9.2	ENSG00000225241.3	403.39410	268.31460	0.58820	4.59730	3.69930	K562	EIF2S2
RP11-640M9.2	ENSG00000225241.3	396.76950	578.33040	-0.54360	5.28900	4.00930	K562	EIF4G2
RP11-640M9.2	ENSG00000225241.3	167.48530	237.02610	-0.50100	2.06260	1.37340	K562	GPKOW
RP11-640M9.2	ENSG00000225241.3	141.84490	251.80920	-0.82800	4.73670	3.97600	K562	HNRNPC
RP11-640M9.2	ENSG00000225241.3	553.39590	732.33870	-0.40420	3.24210	2.24480	K562	MBNL1
RP11-640M9.2	ENSG00000225241.3	454.88020	616.43250	-0.43850	2.93480	1.76660	K562	MSI2
RP11-640M9.2	ENSG00000225241.3	466.01810	632.61990	-0.44100	3.06690	1.49220	K562	NOL12
RP11-640M9.2	ENSG00000225241.3	125.61260	207.97810	-0.72750	3.06950	1.68650	K562	NONO
RP11-640M9.2	ENSG00000225241.3	359.40070	264.68920	0.44120	2.57490	1.93050	K562	PTBP1
RP11-640M9.2	ENSG00000225241.3	443.22260	630.99390	-0.50960	3.72030	2.77690	K562	PUF60
RP11-640M9.2	ENSG00000225241.3	526.78800	671.21920	-0.34960	2.31240	1.34500	K562	PUM1
RP11-640M9.2	ENSG00000225241.3	979.90600	610.88160	0.68170	7.32960	6.49200	K562	PUS1
RP11-640M9.2	ENSG00000225241.3	94.61810	210.16600	-1.15130	5.55390	3.67200	K562	RRP9
RP11-640M9.2	ENSG00000225241.3	691.45500	314.89240	1.13470	5.17660	3.37060	K562	SF1
RP11-640M9.2	ENSG00000225241.3	356.82970	225.41690	0.66250	3.54370	2.43790	K562	SF3B1
RP11-640M9.2	ENSG00000225241.3	346.60400	248.03130	0.48270	2.94690	2.06260	K562	SF3B4
RP11-640M9.2	ENSG00000225241.3	585.25780	361.61910	0.69450	2.55420	1.39280	K562	SNRNP200
RP11-640M9.2	ENSG00000225241.3	512.69560	231.20700	1.14880	11.47830	9.05550	K562	U2AF1
RP11-640M9.2	ENSG00000225241.3	545.62380	238.80180	1.19200	17.28840	15.22660	K562	U2AF2
RP11-640M9.2	ENSG00000225241.3	424.67460	332.65130	0.35220	2.06020	1.43430	K562	UPF1
RP11-640M9.2	ENSG00000225241.3	327.20720	496.36990	-0.60120	4.65440	3.49170	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-640M9.2 is not available on ENCORE database.

10 RBPs can affect the splicing of RP11-640M9.2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144617149	144617252			144615095	144615303	144618081	144618296	-0.50000	0.00001	0.00025	excluded	K562	SF3B4
SE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144604409	144604508			144598511	144598780	144606368	144606510	0.51200	0.00000	0.00003	included	HepG2	U2AF1
SE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144604409	144604508			144598511	144598780	144606368	144606510	0.39800	0.00028	0.04136	included	HepG2	HNRNPM
SE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144604409	144604508			144598511	144598780	144606368	144606510	0.39000	0.00007	0.01091	included	HepG2	SRSF7
SE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144619346	144619419			144618081	144618296	144619882	144620094	0.11600	0.00885	0.09588	included	K562	PUS1
SE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144617149	144617252			144615095	144615303	144618081	144618296	-0.59000	0.00000	0.00213	excluded	HepG2	HNRNPUL1
SE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144604409	144604508			144598511	144598780	144606368	144606510	0.45100	0.00049	0.09514	included	HepG2	EIF3D
MXE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144606837	144607061	144614839	144614993	144606368	144606510	144615095	144615303	-0.33200	0.01586	0.09152	2included	K562	AQR
MXE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144606837	144607061	144614839	144614993	144606368	144606510	144615095	144615303	-0.37600	0.00217	0.06061	2included	HepG2	PCBP1
MXE	RP11-640M9.2	ENSG00000225241.3	chr1	+	144606837	144607061	144614839	144614993	144606368	144606510	144615095	144615303	0.38300	0.00342	0.08048	1included	HepG2	HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-640M9.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-640M9.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-640M9.2 is not avaliable on ENCORE database.

8 proteins are bound to RP11-640M9.2 RNA:

eCLIP assay for RP11-640M9.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-640M9.2 is not available on ENCORE database.

55 RBPs can affect the gene expression of RP11-640M9.2 :

The Knockdown/knockout RNA-Seq assay for RP11-640M9.2 is not available on ENCORE database.

10 RBPs can affect the splicing of RP11-640M9.2 :

The Knockdown/knockout RNA-Seq assay for RP11-640M9.2 is not avaliable on ENCORE database.