TUG1

General Information

Gene Name       : TUG1
Gene ID             : ENSG00000253352.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TUG1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TUG1ENSG00000253352.998.1975.8587.02ENCSR000AEF
HepG2TUG1ENSG00000253352.938.9370.3154.62ENCSR985KAT
K562TUG1ENSG00000253352.963.4477.4770.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TUG1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TUG1 RNA is bound by 2 proteins.  







eCLIP assay for TUG1 is not avaliable on ENCORE database.





2 proteins are bound to TUG1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223136869431368774+intron-Distal,intron-Proximal3.6515719.85428HepG2U2AF2
chr223136881531368881+intron-Proximal3.4851122.91521HepG2U2AF2
chr223137113331371215+intron-Proximal3.676893.25055K562U2AF2
chr223136761731367692+intron-Proximal4.096477.64390K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TUG1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TUG1 is not available on ENCORE database.

  • 89 RBPs can affect the levels of TUG1.  








The Knockdown/knockout RNA-Seq assay for TUG1 is not available on ENCORE database.





89 RBPs can affect the gene expression of TUG1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TUG1ENSG00000253352.43964.654203213.690600.302902.811301.73090HepG2AATF
TUG1ENSG00000253352.43639.819404136.06690-0.184402.598002.00560HepG2ACO1
TUG1ENSG00000253352.42058.297004676.72370-1.1840020.9119019.59330HepG2AKAP1
TUG1ENSG00000253352.44184.337105275.80190-0.334403.320602.67170HepG2BOP1
TUG1ENSG00000253352.42793.606003676.42570-0.396203.619602.74370HepG2CIRBP
TUG1ENSG00000253352.43865.856905282.98990-0.450602.522301.79340HepG2CNOT7
TUG1ENSG00000253352.43496.028004194.52850-0.262803.438402.30450HepG2YBX3
TUG1ENSG00000253352.42537.958401927.672000.396704.203602.90840HepG2CSTF2
TUG1ENSG00000253352.44062.713404787.18590-0.236703.332402.63980HepG2CELF1
TUG1ENSG00000253352.42783.560903825.25510-0.4586012.8888011.36740HepG2DDX19B
TUG1ENSG00000253352.43609.756504200.42950-0.218602.500001.40340HepG2DDX1
TUG1ENSG00000253352.42831.100103545.60010-0.324703.150002.43000HepG2DDX21
TUG1ENSG00000253352.43089.826404480.09450-0.536005.738804.86780HepG2DDX3X
TUG1ENSG00000253352.43991.559205500.16340-0.462502.276001.39210HepG2DDX59
TUG1ENSG00000253352.42310.157303848.14770-0.736208.775207.73940HepG2DDX6
TUG1ENSG00000253352.43228.714604118.78130-0.351305.768704.78580HepG2DNAJC21
TUG1ENSG00000253352.43531.852904082.31150-0.209003.658402.92810HepG2DNAJC2
TUG1ENSG00000253352.42734.500203699.66130-0.436103.980003.27750HepG2EIF2S1
TUG1ENSG00000253352.43592.907904864.73390-0.437205.036203.95720HepG2EIF4G2
TUG1ENSG00000253352.43795.139303066.659000.307403.019502.20180HepG2FUBP3
TUG1ENSG00000253352.43690.718705490.66340-0.573106.311805.37120HepG2GPKOW
TUG1ENSG00000253352.45433.509904730.796200.199702.483201.59150HepG2HNRNPA2B1
TUG1ENSG00000253352.43859.756904625.23930-0.261002.296401.65990HepG2HNRNPC
TUG1ENSG00000253352.45647.148303874.231400.543507.495706.38880HepG2HNRNPK
TUG1ENSG00000253352.43572.999104594.66250-0.362807.932606.94660HepG2HNRNPU
TUG1ENSG00000253352.43778.491405032.88440-0.413602.948001.70970HepG2KHDRBS1
TUG1ENSG00000253352.45180.498403912.317500.405002.763301.76170HepG2KHSRP
TUG1ENSG00000253352.44435.564406534.05300-0.558903.829602.15430HepG2NKRF
TUG1ENSG00000253352.43579.767104828.32180-0.431702.075301.32280HepG2PABPC1
TUG1ENSG00000253352.43256.519604098.07760-0.331605.039404.07290HepG2PPIL4
TUG1ENSG00000253352.43655.529105065.75050-0.4707012.0544010.60720HepG2PRPF4
TUG1ENSG00000253352.43309.048604872.62520-0.558307.713706.78590HepG2PUF60
TUG1ENSG00000253352.45729.381805172.366700.147502.110501.57890HepG2PUM1
TUG1ENSG00000253352.44667.477106597.02660-0.499205.396304.24580HepG2RBM15
TUG1ENSG00000253352.44045.283705760.58150-0.5100012.5362011.59480HepG2RBM22
TUG1ENSG00000253352.45179.991104448.103300.219703.136802.56780HepG2NELFE
TUG1ENSG00000253352.44984.357404142.783600.266704.509003.74700HepG2RECQL
TUG1ENSG00000253352.42516.715004091.76960-0.7012028.9614027.18840HepG2SAFB2
TUG1ENSG00000253352.44262.165305186.47970-0.283202.413301.75240HepG2SF3B1
TUG1ENSG00000253352.44893.684604161.243800.233803.544602.88710HepG2SF3B4
TUG1ENSG00000253352.43860.075204771.72770-0.305908.157207.14420HepG2SMN1
TUG1ENSG00000253352.47237.203206506.331800.153502.299001.82880HepG2SRFBP1
TUG1ENSG00000253352.43720.735004343.42780-0.223203.509602.99330HepG2SRSF1
TUG1ENSG00000253352.44040.161905580.42770-0.466003.699102.52460HepG2SRSF3
TUG1ENSG00000253352.43599.719004810.83970-0.4184010.264809.16220HepG2SRSF5
TUG1ENSG00000253352.45322.531303533.601500.5909021.0612019.80000HepG2SRSF9
TUG1ENSG00000253352.43570.377304613.46560-0.369802.316201.32530HepG2STIP1
TUG1ENSG00000253352.44168.822903054.105900.448804.383403.56060HepG2SUPV3L1
TUG1ENSG00000253352.44616.554103904.015200.241802.933102.35800HepG2TAF15
TUG1ENSG00000253352.43953.281305106.81830-0.369403.771402.94050HepG2TARDBP
TUG1ENSG00000253352.44495.381903587.286900.325503.872202.89140HepG2TIA1
TUG1ENSG00000253352.43363.049104504.47520-0.4216010.125509.15070HepG2TRIM56
TUG1ENSG00000253352.42725.643505025.15620-0.8826016.7237015.13100HepG2U2AF1
TUG1ENSG00000253352.41404.833701804.26740-0.361002.442401.72920HepG2UCHL5
TUG1ENSG00000253352.43490.962204750.66410-0.444502.923601.79050HepG2XPO5
TUG1ENSG00000253352.46958.493604999.336900.4769017.8333016.38880HepG2ZC3H8
TUG1ENSG00000253352.43819.621105579.01540-0.5466012.2577011.15690K562AGGF1
TUG1ENSG00000253352.44983.535106129.99390-0.298702.874101.86810K562AKAP8
TUG1ENSG00000253352.44398.903905805.09530-0.400204.977504.09050K562AKAP8L
TUG1ENSG00000253352.411977.222306489.130800.8841020.0666018.65600K562AQR
TUG1ENSG00000253352.45178.967506090.70960-0.233903.089202.12120K562ATP5C1
TUG1ENSG00000253352.45675.285706667.62980-0.232502.655701.51030K562CCDC124
TUG1ENSG00000253352.46126.177108040.55670-0.392308.715806.74090K562CPEB4
TUG1ENSG00000253352.42456.608502882.28210-0.230502.286201.34360K562CSTF2
TUG1ENSG00000253352.41982.470602824.91300-0.510907.562205.75180K562DDX3X
TUG1ENSG00000253352.44494.178606247.47080-0.475208.953607.20050K562DKC1
TUG1ENSG00000253352.42511.211903102.80390-0.305204.610003.02370K562EIF2S1
TUG1ENSG00000253352.42991.885903606.39190-0.269503.124702.28070K562EIF3G
TUG1ENSG00000253352.42098.722002576.14930-0.295703.605902.10490K562EWSR1
TUG1ENSG00000253352.45163.455706794.68920-0.396104.589403.47710K562FIP1L1
TUG1ENSG00000253352.43854.205203069.212200.328505.166004.37530K562FXR1
TUG1ENSG00000253352.43022.246303773.10020-0.320103.317301.71620K562G3BP1
TUG1ENSG00000253352.44941.735403450.236700.518204.129803.22510K562G3BP2
TUG1ENSG00000253352.44967.429906838.08980-0.461106.845805.64800K562GRSF1
TUG1ENSG00000253352.46573.011309212.33940-0.487006.538005.32960K562HSPD1
TUG1ENSG00000253352.43255.531804013.83740-0.302102.752401.56530K562IGF2BP3
TUG1ENSG00000253352.45128.296206161.08880-0.264703.073402.20080K562KIF1C
TUG1ENSG00000253352.44754.409405897.32770-0.310803.600402.32170K562MAK16
TUG1ENSG00000253352.43456.873004139.33290-0.259902.463801.59720K562MATR3
TUG1ENSG00000253352.45780.035806901.91540-0.255902.843701.91870K562MBNL1
TUG1ENSG00000253352.43044.204503690.49550-0.277702.494501.56780K562PCBP2
TUG1ENSG00000253352.44966.372404207.008900.239302.444901.69460K562POLR2G
TUG1ENSG00000253352.45000.906007713.12770-0.625109.836508.02000K562PPIG
TUG1ENSG00000253352.43320.368804029.66650-0.279302.839502.16750K562PTBP1
TUG1ENSG00000253352.43955.601605757.94320-0.541707.559706.70810K562PUS1
TUG1ENSG00000253352.44414.667205609.51760-0.345605.730604.90340K562RBM15
TUG1ENSG00000253352.44563.706003748.644000.283702.739501.66360K562SAFB
TUG1ENSG00000253352.44905.578303875.619700.339903.236301.66370K562SDAD1
TUG1ENSG00000253352.43218.583403950.35130-0.295603.072502.33090K562SRSF1
TUG1ENSG00000253352.42861.900303730.64720-0.382503.794102.52750K562SRSF5
TUG1ENSG00000253352.45734.809604788.556500.260102.977601.39710K562SRSF9
TUG1ENSG00000253352.45242.032204219.782500.312903.990303.00110K562SYNCRIP
TUG1ENSG00000253352.43129.621703856.63420-0.301403.206102.31550K562TIA1
TUG1ENSG00000253352.43123.312603784.17140-0.276902.337301.35030K562TRA2A
TUG1ENSG00000253352.44232.844003455.068300.292803.451002.55540K562U2AF2
TUG1ENSG00000253352.48959.468106522.575500.457906.703005.63830K562UPF1
TUG1ENSG00000253352.47098.624205803.524200.290506.480805.23730K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TUG1 is not available on ENCORE database.





9 RBPs can affect the splicing of TUG1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETUG1ENSG00000253352.4chr22+3136803331368158313674243136776531368840313693420.175000.000170.00901includedK562PRPF8
SETUG1ENSG00000253352.4chr22+3136803331368158313674243136776531368840313693420.143000.000440.07762includedK562HNRNPA1
SETUG1ENSG00000253352.4chr22+3136803331368158313674243136776531368840313693420.161000.000120.01496includedK562SUPV3L1
SETUG1ENSG00000253352.4chr22+313680333136815831367424313677653136884031369342-0.149000.000030.00285excludedHepG2SFPQ
SETUG1ENSG00000253352.4chr22+313680333136815831367424313677653136884031369342-0.092000.000170.03626excludedK562LARP4
SETUG1ENSG00000253352.4chr22+313680333136815831367424313677653136884031369342-0.134000.000470.06292excludedHepG2HNRNPUL1
SETUG1ENSG00000253352.4chr22+3136803331368158313674243136776531368840313693420.185000.000070.02537includedHepG2EIF3D
SETUG1ENSG00000253352.4chr22+3136803331368158313674243136776531368909313695870.258000.000060.03475includedHepG2DROSHA
SETUG1ENSG00000253352.4chr22+313680333136815831367424313677653136884031369342-0.073000.006560.08567excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TUG1 is not avaliable on ENCORE database.