ABCD4

General Information

Gene Name : ABCD4
Gene ID : ENSG00000119688.20
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ABCD4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ABCD4	ENSG00000119688.20	8.17	15.34	11.75	ENCSR000AEF
HepG2	ABCD4	ENSG00000119688.20	52.31	43.06	47.69	ENCSR985KAT
K562	ABCD4	ENSG00000119688.20	10.00	9.72	9.86	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ABCD4 is not avaliable on ENCORE database.

Proteins bound to RNA

ABCD4 RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for ABCD4 is not avaliable on ENCORE database.

25 proteins are bound to ABCD4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	74761796	74761894	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.36425	50.49671	HepG2	PRPF8
chr14	74759636	74759668	-	intron-Distal,intron-Proximal	5.93828	29.85860	HepG2	SF3B4
chr14	74761781	74761888	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.08992	27.74263	HepG2	EFTUD2
chr14	74759583	74759635	-	intron-Distal,intron-Proximal	6.66484	27.43790	HepG2	SF3B4
chr14	74755367	74755431	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.43285	21.78638	HepG2	PRPF8
chr14	74755372	74755484	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.93020	21.47063	HepG2	EFTUD2
chr14	74756138	74756224	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.39534	18.94550	HepG2	PRPF8
chr14	74759779	74759870	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28478	17.06346	HepG2	PRPF8
chr14	74761795	74761900	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.50258	17.01476	HepG2	PPIG
chr14	74764577	74764668	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.82980	16.80068	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 105 entries

eCLIP assay for ABCD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ABCD4 is not available on ENCORE database.
72 RBPs can affect the levels of ABCD4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ABCD4 is not available on ENCORE database.

72 RBPs can affect the gene expression of ABCD4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ABCD4	ENSG00000119688.16	632.01940	1689.54980	-1.41860	23.57800	22.19370	HepG2	AKAP1
ABCD4	ENSG00000119688.16	845.29820	1453.86800	-0.78240	18.08740	17.10070	HepG2	SRSF1
ABCD4	ENSG00000119688.16	1038.76870	543.74960	0.93380	12.87770	11.46510	HepG2	SF3B1
ABCD4	ENSG00000119688.16	2256.56420	1630.01880	0.46910	9.68940	8.84390	HepG2	SSB
ABCD4	ENSG00000119688.16	248.31170	463.13900	-0.89930	9.66670	8.47980	K562	PTBP1
ABCD4	ENSG00000119688.16	1760.64710	1281.68230	0.45800	9.48970	8.40270	HepG2	CKAP4
ABCD4	ENSG00000119688.16	834.10410	487.12650	0.77580	8.06730	6.83820	HepG2	NSUN2
ABCD4	ENSG00000119688.16	1241.43450	1639.17260	-0.40100	7.47370	6.59640	HepG2	PUM1
ABCD4	ENSG00000119688.16	2636.95070	1988.84350	0.40680	7.06320	6.17700	HepG2	ETF1
ABCD4	ENSG00000119688.16	1167.28660	755.35240	0.62780	6.89910	6.08670	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 75 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ABCD4 is not available on ENCORE database.

33 RBPs can affect the splicing of ABCD4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	ABCD4	ENSG00000119688.16	chr14	-	74754909	74754962	74754512	74754589	74755418	74755468	-0.44200	0.00001	excluded	HepG2	U2AF1
A3SS	ABCD4	ENSG00000119688.16	chr14	-	74763035	74763175	74763035	74763152	74764632	74764772	0.24500	0.00002	longer	HepG2	U2AF1
RI	ABCD4	ENSG00000119688.16	chr14	-	74759450	74759951	74759450	74759572	74759856	74759951	0.29800	0.00015	included	HepG2	PCBP2
RI	ABCD4	ENSG00000119688.16	chr14	-	74763035	74764772	74763035	74763152	74764632	74764772	0.18400	0.00007	included	HepG2	SF3A3
RI	ABCD4	ENSG00000119688.16	chr14	-	74763035	74764772	74763035	74763152	74764632	74764772	-0.36900	0.00000	excluded	K562	HNRNPC
RI	ABCD4	ENSG00000119688.16	chr14	-	74763035	74764772	74763035	74763152	74764632	74764772	0.33500	0.00000	included	HepG2	U2AF2
RI	ABCD4	ENSG00000119688.16	chr14	-	74759450	74759951	74759450	74759572	74759856	74759951	0.44700	0.00000	included	HepG2	U2AF2
RI	ABCD4	ENSG00000119688.16	chr14	-	74759450	74759951	74759450	74759572	74759856	74759951	0.38600	0.00040	included	K562	NPM1
RI	ABCD4	ENSG00000119688.16	chr14	-	74763035	74764772	74763035	74763152	74764632	74764772	0.33900	0.00000	included	HepG2	U2AF1
RI	ABCD4	ENSG00000119688.16	chr14	-	74759450	74759951	74759450	74759572	74759856	74759951	0.33000	0.00000	included	HepG2	U2AF1

Showing 1 to 10 of 74 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ABCD4

General Information

Functions

Localization

Domains (AlphaFold: ABCD4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ABCD4 is not avaliable on ENCORE database.

25 proteins are bound to ABCD4 RNA:

eCLIP assay for ABCD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ABCD4 is not available on ENCORE database.

72 RBPs can affect the gene expression of ABCD4 :

The Knockdown/knockout RNA-Seq assay for ABCD4 is not available on ENCORE database.

33 RBPs can affect the splicing of ABCD4 :

The Knockdown/knockout RNA-Seq assay for ABCD4 is not avaliable on ENCORE database.