TBC1D16

General Information

Gene Name       : TBC1D16
Gene ID             : ENSG00000167291.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBC1D16)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBC1D16ENSG00000167291.150.000.000.00ENCSR000AEF
HepG2TBC1D16ENSG00000167291.1523.209.5516.38ENCSR985KAT
K562TBC1D16ENSG00000167291.150.080.010.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBC1D16 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBC1D16 RNA is bound by 27 proteins.  







eCLIP assay for TBC1D16 is not avaliable on ENCORE database.





27 proteins are bound to TBC1D16 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177791453577914593-3'-UTR,intron-Distal4.157587.75255HepG2SLTM
chr177791016377910257-3'-UTR,intron-Distal3.759124.91603HepG2LIN28B
chr177791454077914632-3'-UTR,intron-Distal4.986338.82769HepG2PRPF4
chr177791430277914340-3'-UTR,intron-Distal4.748495.82915HepG2RBM15
chr177791148177911537-3'-UTR,intron-Distal3.154836.07372HepG2CSTF2T
chr177790914477909260-3'-UTR,intron-Distal3.383558.85010HepG2CSTF2T
chr177791442677914491-3'-UTR,intron-Distal3.378764.07500HepG2SLTM
chr177790870277908751-3'-UTR,intron-Distal5.033689.37564HepG2XPO5
chr177790899777909066-3'-UTR,intron-Distal3.505116.28777HepG2CSTF2T
chr177792634677926497-3'-UTR,CDS,intron-Distal,intron-Proximal3.578507.54792HepG2PRPF8
chr177791107877911107-3'-UTR,intron-Distal,intron-Proximal3.135383.46580HepG2CSTF2T
chr177792438777924441-5'-UTR,intron-Distal,intron-Proximal3.294555.55128HepG2SF3B4
chr177800935278009618-5'-UTR,intron-Distal5.007187.82868HepG2PRPF4
chr177800959078009633-5'-UTR,intron-Distal4.0622711.88306HepG2DDX3X
chr177798735777987409-5'-UTR,intron-Distal,intron-Proximal4.241788.97908HepG2DDX3X
chr177798409577984186-CDS,intron-Distal3.908065.40651HepG2PPIG
chr177791868677918773-CDS,intron-Distal,intron-Proximal3.318435.30095HepG2PPIG
chr177792526577925344-CDS,intron-Distal3.313733.32039HepG2PPIG
chr177791865777918748-CDS,intron-Distal,intron-Proximal4.0914915.49797HepG2PRPF8
chr177792160377921750-CDS,intron-Distal,intron-Proximal3.733719.15895HepG2SF3B4
chr177792350377923591-CDS,intron-Distal,intron-Proximal3.207234.77136HepG2PPIG
chr177792347277923517-CDS,intron-Distal,intron-Proximal5.334296.92731HepG2PRPF8
chr177792153777921591-CDS,intron-Distal4.412703.82843HepG2PPIG
chr177796620077966228-intron-Distal3.269456.13981HepG2CSTF2T
chr177797704677977105-intron-Distal4.249844.10387HepG2SFPQ
chr177797706277977107-intron-Distal4.336603.63902HepG2CSTF2T
chr177795716577957222-intron-Distal3.998793.45420HepG2EIF3D
chr177796639077966418-intron-Distal3.177416.79749HepG2CSTF2T
chr177797551977975592-intron-Distal3.288873.94332HepG2FAM120A
chr177792663677926692-intron-Distal,intron-Proximal3.989503.56713HepG2SF3B4
chr177794948777949545-intron-Distal3.313453.46580HepG2CSTF2T
chr177796516077965225-intron-Distal3.284579.41965HepG2CSTF2T
chr177797501977975100-intron-Distal5.290559.35257HepG2CSTF2T
chr177795446577954545-intron-Distal3.310626.99714HepG2CSTF2T
chr177799737377997430-intron-Distal4.524395.60609HepG2CSTF2T
chr177796287677962999-intron-Distal3.834689.16997HepG2HNRNPM
chr177799747877997541-intron-Distal4.226598.19675HepG2CSTF2T
chr177796425177964311-intron-Distal3.728235.06951HepG2HNRNPUL1
chr177797449377974561-intron-Distal3.197454.24473HepG2CSTF2T
chr177797660977976677-intron-Distal3.338705.12571HepG2CSTF2T
chr177796231877962388-intron-Distal3.704805.12003HepG2HNRNPM
chr177799812877998179-intron-Distal5.784747.30436HepG2DKC1
chr177795064277950702-intron-Distal3.440166.73713HepG2CSTF2T
chr177795303177953135-intron-Distal3.498924.61500HepG2HNRNPM
chr177796647477966564-intron-Distal3.243013.00392HepG2FUS
chr177795858077958671-intron-Distal4.241688.88160HepG2PTBP1
chr177791601877916135-intron-Distal,intron-Proximal3.761666.32943HepG2SF3B4
chr177791519977915268-intron-Distal4.448844.83107HepG2EFTUD2
chr177800941878009476-intron-Distal3.366353.69530HepG2CSTF2T
chr177796649577966574-intron-Distal3.685153.21433HepG2TAF15
chr177796647077966516-intron-Distal4.345063.95534HepG2CDC40
chr177795555377955621-intron-Distal3.909355.49084HepG2SFPQ
chr177798290977982969-intron-Distal3.312144.02266HepG2CSTF2T
chr177799796977998064-intron-Distal4.121137.58727HepG2CSTF2T
chr177799790277997958-intron-Distal3.703058.15854HepG2CSTF2T
chr177795117677951264-intron-Distal3.582625.59719HepG2CSTF2T
chr177792280877922909-intron-Distal,intron-Proximal4.183226.98946HepG2SF3B4
chr177797526077975309-intron-Distal3.458563.92299HepG2CSTF2T
chr177796259977962638-intron-Distal3.196424.68402HepG2CSTF2T
chr177798291077982976-intron-Distal3.673506.95640HepG2RBFOX2
chr177796446777964497-intron-Distal3.448883.69530HepG2CSTF2T
chr177799790877997962-intron-Distal4.296198.84898HepG2FAM120A
chr177795557677955654-intron-Distal3.497844.24903HepG2EIF3D
chr177791861677918681-intron-Distal,intron-Proximal4.196884.97312HepG2EFTUD2
chr177798240177982478-intron-Distal4.398418.66215HepG2CSTF2T
chr177792416077924210-intron-Distal,intron-Proximal3.372966.18341HepG2PRPF8
chr177795541077955482-intron-Distal3.184903.11000HepG2HNRNPM
chr177799798377998044-intron-Distal3.246725.38180HepG2FAM120A
chr177797540877975463-intron-Distal3.171405.21772HepG2CSTF2T
chr177799838177998452-intron-Distal6.112266.69377HepG2DKC1
chr177792238577922481-intron-Distal4.555054.87774HepG2HNRNPK
chr177796644377966467-intron-Distal3.524394.60046HepG2CSTF2T
chr177795352277953560-intron-Distal3.408793.69530HepG2CSTF2T
chr177795316177953209-intron-Distal4.079313.44758HepG2CSTF2T
chr177797550577975560-intron-Distal3.957953.07858HepG2HNRNPUL1
chr177797951677979587-intron-Distal3.807365.82228HepG2RBFOX2
chr177797598977976046-intron-Distal3.288186.05986HepG2CSTF2T
chr177799781477997858-intron-Distal3.279334.21158HepG2CSTF2T
chr177797483077974906-intron-Distal4.828966.05659HepG2CSTF2T
chr177792218977922255-intron-Distal3.476994.09699HepG2HNRNPK
chr177792231977922385-intron-Distal4.358754.83379HepG2HNRNPK
chr177792305677923114-intron-Distal7.7185737.55659HepG2XPO5
chr177797552277975580-intron-Distal3.251164.46520HepG2CSTF2T
chr177792852377928575-intron-Distal3.505115.16304HepG2CSTF2T
chr177799905777999126-intron-Distal4.321254.68055HepG2CSTF2T
chr177795517077955222-intron-Distal3.047363.00463HepG2NKRF
chr177792311477923143-intron-Distal6.0787810.30844HepG2XPO5
chr177795804577958114-intron-Distal3.155684.07077HepG2HNRNPC
chr177791730277917363-intron-Distal3.941534.01653HepG2SLTM
chr177795152577951585-intron-Distal3.325853.50045HepG2SFPQ
chr177793467077934740-intron-Distal3.645574.97292HepG2ILF3
chr177799749077997537-intron-Distal4.814186.74166HepG2FAM120A
chr177796648577966576-intron-Distal4.184624.10415HepG2RBM5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBC1D16 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBC1D16 is not available on ENCORE database.

  • 49 RBPs can affect the levels of TBC1D16.  








The Knockdown/knockout RNA-Seq assay for TBC1D16 is not available on ENCORE database.





49 RBPs can affect the gene expression of TBC1D16 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBC1D16ENSG00000167291.111796.914402350.03820-0.387202.655002.13360HepG2AKAP1
TBC1D16ENSG00000167291.112318.916903105.82660-0.421508.929607.81230HepG2AUH
TBC1D16ENSG00000167291.11868.075801540.46510-0.8275012.5123011.36060HepG2BOP1
TBC1D16ENSG00000167291.11889.009701139.73990-0.358403.044402.23800HepG2CALR
TBC1D16ENSG00000167291.111154.388601414.24850-0.292901.945501.35790HepG2CPSF6
TBC1D16ENSG00000167291.111825.764001433.620300.348704.627703.83460HepG2CELF1
TBC1D16ENSG00000167291.11599.78860997.15810-0.7334011.374409.29080HepG2DDX1
TBC1D16ENSG00000167291.113468.462601934.072700.8426011.067009.92800HepG2DDX6
TBC1D16ENSG00000167291.11733.33010943.05950-0.362902.676901.70830HepG2DHX30
TBC1D16ENSG00000167291.111916.889301405.594000.447505.389903.79000HepG2EIF2S2
TBC1D16ENSG00000167291.112572.621102054.016200.324701.967501.42460HepG2EIF4A3
TBC1D16ENSG00000167291.113145.232102000.278000.652905.511204.56270HepG2EIF4B
TBC1D16ENSG00000167291.114791.461103566.088000.426009.348408.35190HepG2ETF1
TBC1D16ENSG00000167291.112427.945501697.942700.515807.104705.77150HepG2EWSR1
TBC1D16ENSG00000167291.112690.780101871.016100.524104.761803.77440HepG2FIP1L1
TBC1D16ENSG00000167291.111384.56570987.132200.488005.047504.20990HepG2HNRNPA1
TBC1D16ENSG00000167291.11896.180101098.01090-0.293001.891601.30730HepG2HNRNPC
TBC1D16ENSG00000167291.11950.479901529.96780-0.686807.920706.91700HepG2HNRNPLL
TBC1D16ENSG00000167291.111308.908901114.164400.232302.732702.00420HepG2ILF2
TBC1D16ENSG00000167291.113026.160802085.287100.537104.961204.13760HepG2MATR3
TBC1D16ENSG00000167291.111028.336801560.26250-0.601503.776102.63300HepG2MTPAP
TBC1D16ENSG00000167291.11905.791001271.53150-0.489305.001503.37820HepG2NAA15
TBC1D16ENSG00000167291.111566.444902134.32240-0.446303.644702.92120HepG2NCBP2
TBC1D16ENSG00000167291.112109.199101528.536200.464406.862205.66750HepG2NOL12
TBC1D16ENSG00000167291.111458.308001825.73130-0.324204.287803.34820HepG2PRPF4
TBC1D16ENSG00000167291.112269.035101548.925700.5507012.0912011.03580HepG2PUM1
TBC1D16ENSG00000167291.111047.003501769.72380-0.7573021.6656020.24160HepG2PUS1
TBC1D16ENSG00000167291.11563.15960834.43190-0.567303.905301.82160HepG2RBM14
TBC1D16ENSG00000167291.112913.927902266.736800.362205.556404.83220HepG2NELFE
TBC1D16ENSG00000167291.111566.39470875.742300.8388014.3155013.06150HepG2RPS19
TBC1D16ENSG00000167291.111162.414401711.21930-0.557904.199003.35910HepG2SF3A3
TBC1D16ENSG00000167291.111625.583801399.075700.216402.523501.84930HepG2SLBP
TBC1D16ENSG00000167291.111348.621701132.757300.251503.050702.37950HepG2SMN1
TBC1D16ENSG00000167291.11939.054401685.01860-0.843506.830205.59660HepG2SNRNP70
TBC1D16ENSG00000167291.111925.043202213.37060-0.201402.061501.63670HepG2SRSF1
TBC1D16ENSG00000167291.111795.168401440.674000.317304.222803.47820HepG2SRSF5
TBC1D16ENSG00000167291.111499.565201726.38230-0.203202.007201.40400HepG2SRSF7
TBC1D16ENSG00000167291.112154.677501800.736600.258803.608902.99700HepG2SRSF9
TBC1D16ENSG00000167291.112117.650602922.67550-0.4648011.0114010.12130HepG2SSB
TBC1D16ENSG00000167291.112715.311801638.441300.7287026.2368024.64190HepG2SUCLG1
TBC1D16ENSG00000167291.111491.907901059.835300.493206.467505.76280HepG2TIAL1
TBC1D16ENSG00000167291.111439.122901069.344800.428406.695705.88600HepG2TRIM56
TBC1D16ENSG00000167291.111724.479701425.504800.274602.273001.48600HepG2TUFM
TBC1D16ENSG00000167291.11869.599901600.51990-0.8801012.9339011.54180HepG2U2AF1
TBC1D16ENSG00000167291.111298.65610765.546100.762408.756607.40170HepG2UCHL5
TBC1D16ENSG00000167291.11913.762601465.17170-0.6812014.6541013.43900HepG2UTP3
TBC1D16ENSG00000167291.11850.046901801.74860-1.0838042.7018040.72050HepG2ZC3H8
TBC1D16ENSG00000167291.111119.443801669.05740-0.5763014.4981013.48970HepG2ZNF622
TBC1D16ENSG00000167291.1112.602901.355403.216902.254501.44590K562PSIP1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBC1D16 is not available on ENCORE database.





3 RBPs can affect the splicing of TBC1D16 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBC1D16ENSG00000167291.11chr17-7796659777966663779264557792661777967394779674330.651000.003690.05965includedHepG2U2AF1
SETBC1D16ENSG00000167291.11chr17-7796659777966663779264557792661777967394779674330.345000.000120.08216includedHepG2PPIG
A3SSTBC1D16ENSG00000167291.11chr17-779242097792437777924209779243747792524877925396-0.213000.000350.09917shorterHepG2TBRG4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBC1D16 is not avaliable on ENCORE database.