TBCA

General Information

Gene Name       : TBCA
Gene ID             : ENSG00000171530.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TBCA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBCAENSG00000171530.13214.75194.82204.78ENCSR000AEF
HepG2TBCAENSG00000171530.13170.68262.92216.80ENCSR985KAT
K562TBCAENSG00000171530.13222.59224.58223.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBCA is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBCA RNA is bound by 24 proteins.  







eCLIP assay for TBCA is not avaliable on ENCORE database.





24 proteins are bound to TBCA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr57698716276987253-3'-UTR,CDS,intron-Distal,intron-Proximal4.005105.37552K562PUM1
chr57698911576989134-3'-UTR,CDS,intron-Distal3.275548.23345K562UCHL5
chr57698716076987234-3'-UTR,intron-Distal,intron-Proximal4.019373.68544HepG2EIF3D
chr57698913276989178-3'-UTR,CDS,intron-Distal,intron-Proximal3.8065625.53235HepG2BCLAF1
chr57698913476989169-3'-UTR,CDS,intron-Distal4.0118123.44011K562UCHL5
chr57698713976987170-3'-UTR,intron-Distal,intron-Proximal4.324317.93948K562ZNF622
chr57698909376989115-3'-UTR,CDS,intron-Distal3.232267.44851K562UCHL5
chr57698718576987221-3'-UTR,intron-Distal,intron-Proximal3.485278.01252K562ZNF622
chr57700413277004173-3'-UTR,CDS,intron-Distal,intron-Proximal5.078907.83063HepG2GRWD1
chr57698912576989156-3'-UTR,CDS,intron-Distal3.484918.50380HepG2GRWD1
chr57698714876987202-3'-UTR,intron-Distal,intron-Proximal4.0164010.05563HepG2BCLAF1
chr57698908376989126-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site3.332274.20336HepG2AQR
chr57698911676989158-3'-UTR,CDS,intron-Distal3.7299225.20210K562ZNF622
chr57698728876987324-3'-UTR,CDS,intron-Distal3.7555610.31073K562ZNF622
chr57698913476989184-3'-UTR,CDS,intron-Distal,intron-Proximal3.853015.23469HepG2AQR
chr57698728976987325-3'-UTR,CDS,intron-Distal3.761604.65365HepG2GRWD1
chr57700408077004173-3'-UTR,CDS,intron-Distal,intron-Proximal3.2869016.13645K562UCHL5
chr57700406677004164-3'-UTR,CDS,intron-Distal,intron-Proximal3.601895.88155HepG2FXR2
chr57700414877004173-3'-UTR,CDS,intron-Distal,intron-Proximal4.145273.22248HepG2TRA2A
chr57700412777004174-3'-UTR,CDS,intron-Distal,intron-Proximal3.301157.17439HepG2BCLAF1
chr57698913276989179-3'-UTR,CDS,intron-Distal,intron-Proximal3.349314.27226HepG2FTO
chr57698714976987218-3'-UTR,intron-Distal,intron-Proximal4.505275.04143K562GRWD1
chr57698713876987207-3'-UTR,intron-Distal,intron-Proximal3.137469.56070HepG2LARP4
chr57698717076987185-3'-UTR,intron-Distal,intron-Proximal4.2725312.05816K562ZNF622
chr57698909076989116-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site3.2057911.47593K562ZNF622
chr57698908776989121-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site3.200198.80715HepG2BCLAF1
chr57698908876989105-3'-UTR,CDS,intron-Distal,intron-Proximal,polyA_site3.673817.03584HepG2GRWD1
chr57707206877072125-5'-UTR,CDS,intron-Distal,intron-Proximal3.778518.38773HepG2GRWD1
chr57707205777072152-5'-UTR,CDS,intron-Distal,intron-Proximal3.444049.73651K562YBX3
chr57707206077072116-5'-UTR,CDS,intron-Distal,intron-Proximal4.349598.58706K562UCHL5
chr57707200677072106-5'-UTR,CDS,intron-Distal,intron-Proximal3.120673.98234K562SRSF7
chr57698916976989178-CDS,intron-Distal,intron-Proximal3.2767715.66194K562UCHL5
chr57707202377072068-CDS,intron-Distal4.1360713.28210HepG2GRWD1
chr57700406677004084-CDS,intron-Distal,intron-Proximal4.3234222.80504K562ZNF622
chr57700406477004148-CDS,intron-Distal,intron-Proximal4.951084.99268HepG2TRA2A
chr57698915676989178-CDS,intron-Distal,intron-Proximal3.213715.65105HepG2GRWD1
chr57700406577004099-CDS,intron-Distal,intron-Proximal3.785018.50585HepG2GRWD1
chr57700406477004080-CDS,intron-Distal,intron-Proximal3.1534713.40258K562UCHL5
chr57700406577004127-CDS,intron-Distal,intron-Proximal4.3178429.44498HepG2BCLAF1
chr57698916976989178-CDS,intron-Distal,intron-Proximal3.9130820.27187K562ZNF622
chr57698915876989169-CDS,intron-Distal4.1979422.80504K562ZNF622
chr57700408577004133-CDS,intron-Distal3.4056112.63543K562ZNF622
chr57700409977004126-CDS,intron-Distal4.997447.17283HepG2GRWD1
chr57700406577004080-CDS,intron-Distal,intron-Proximal3.795644.38945K562CPSF6
chr57700406577004144-CDS,intron-Distal,intron-Proximal3.738963.73303HepG2UCHL5
chr57704633877046401-intron-Distal4.6051011.12558HepG2QKI
chr57700425977004306-intron-Distal,intron-Proximal3.616373.95921HepG2U2AF2
chr57704669577046739-intron-Distal3.587284.52298HepG2QKI
chr57702436077024435-intron-Distal5.5693611.11632HepG2QKI
chr57706444677064529-intron-Distal3.503723.76460HepG2HNRNPL
chr57706838977068465-intron-Distal4.095255.75173HepG2QKI
chr57703711277037176-intron-Distal4.444534.07628HepG2PTBP1
chr57700282477002970-intron-Distal3.050274.30460HepG2HNRNPL
chr57703041977030473-intron-Distal4.242794.78128HepG2SUGP2
chr57707172277071796-intron-Distal4.486334.48994K562RBM15
chr57706537677065461-intron-Distal3.998073.29239HepG2CSTF2
chr57706836377068522-intron-Distal3.408786.04536K562KHSRP
chr57700314577003283-intron-Distal3.261014.86294HepG2PTBP1
chr57703709377037161-intron-Distal3.033223.72889HepG2SUGP2
chr57703711177037186-intron-Distal4.931735.01910HepG2MATR3
chr57702028277020386-intron-Distal4.414824.58794K562KHSRP
chr57699433776994378-intron-Distal3.982413.60235HepG2HNRNPM
chr57703299777033078-intron-Distal3.258815.38424HepG2HNRNPL
chr57704488977045000-intron-Distal3.540516.15810HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBCA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBCA is not available on ENCORE database.

  • 105 RBPs can affect the levels of TBCA.  








The Knockdown/knockout RNA-Seq assay for TBCA is not available on ENCORE database.





105 RBPs can affect the gene expression of TBCA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBCAENSG00000171530.91343.229801608.58680-0.260103.164502.52110HepG2ACO1
TBCAENSG00000171530.91271.861901861.25250-0.549304.502603.18520HepG2AKAP8
TBCAENSG00000171530.91202.262601616.13870-0.426806.662005.52400HepG2AKAP8L
TBCAENSG00000171530.91982.974102954.49470-0.575206.352805.18550HepG2ASCC1
TBCAENSG00000171530.92018.458202357.98800-0.224302.095801.48290HepG2AUH
TBCAENSG00000171530.91884.330401413.730300.414403.144902.14570HepG2BCCIP
TBCAENSG00000171530.92817.099302020.953300.479106.648905.52020HepG2CALR
TBCAENSG00000171530.91816.857501608.230400.175901.914301.34700HepG2CKAP4
TBCAENSG00000171530.91218.886701735.59770-0.509902.826902.05330HepG2CNOT7
TBCAENSG00000171530.91144.79490873.364700.390303.341402.16880HepG2CSTF2
TBCAENSG00000171530.92129.819502937.97530-0.464103.792503.07950HepG2DDX6
TBCAENSG00000171530.91321.152501860.04420-0.493503.580202.54010HepG2EEF2
TBCAENSG00000171530.91496.973002824.71800-0.9161014.2358012.96130HepG2EIF2S1
TBCAENSG00000171530.91092.548301510.00150-0.466903.442602.44060HepG2EIF3D
TBCAENSG00000171530.91600.178103121.82490-0.9642013.7462012.34230HepG2EIF4A3
TBCAENSG00000171530.91466.058002479.24040-0.758009.458207.98830HepG2EIF4G2
TBCAENSG00000171530.92080.691402707.45500-0.379906.922306.04340HepG2ETF1
TBCAENSG00000171530.91839.641002492.37480-0.438103.164102.34720HepG2FIP1L1
TBCAENSG00000171530.92020.125103149.24740-0.640607.861306.74190HepG2FXR1
TBCAENSG00000171530.91740.768302921.67440-0.747109.264708.08310HepG2G3BP1
TBCAENSG00000171530.9887.493901344.47910-0.599204.477003.32770HepG2GEMIN5
TBCAENSG00000171530.9751.052901467.71160-0.966609.822407.15170HepG2HNRNPA0
TBCAENSG00000171530.92151.967802957.79320-0.458904.936104.02460HepG2HNRNPK
TBCAENSG00000171530.91700.220002969.91980-0.8047011.7295010.44370HepG2IGF2BP2
TBCAENSG00000171530.91765.095401333.123000.404804.534603.61470HepG2ILF2
TBCAENSG00000171530.92192.629102987.04180-0.446102.995801.94670HepG2KHSRP
TBCAENSG00000171530.91196.275301470.44580-0.297703.711202.53040HepG2KIF1C
TBCAENSG00000171530.92155.797103150.34450-0.547305.787204.85020HepG2MAGOH
TBCAENSG00000171530.92119.423403168.06490-0.579905.692804.81280HepG2MATR3
TBCAENSG00000171530.91488.878102017.67860-0.438504.624903.59870HepG2MSI2
TBCAENSG00000171530.91858.880903242.76240-0.8028010.911009.69390HepG2NCBP2
TBCAENSG00000171530.92180.934602601.38660-0.254302.124801.45460HepG2NOL12
TBCAENSG00000171530.92848.588902048.553100.475505.388804.36110HepG2NSUN2
TBCAENSG00000171530.91784.876402888.22120-0.694408.496107.24660HepG2PABPC4
TBCAENSG00000171530.91839.866902941.62420-0.6770019.8494018.46380HepG2PCBP1
TBCAENSG00000171530.91454.506301164.049700.321303.506902.68680HepG2PPIL4
TBCAENSG00000171530.91435.013201072.458600.420003.499002.60040HepG2PRPF8
TBCAENSG00000171530.91500.943002993.32740-0.9959038.3178036.76750HepG2PTBP1
TBCAENSG00000171530.92091.345102634.11190-0.332903.964303.16550HepG2PUM2
TBCAENSG00000171530.91160.314101638.44900-0.497809.781808.74370HepG2PUS1
TBCAENSG00000171530.92138.115303241.60290-0.6004012.3061011.12550HepG2QKI
TBCAENSG00000171530.91624.220502942.05540-0.8571018.7177017.06880HepG2RBM25
TBCAENSG00000171530.91981.389703331.19060-0.7495020.0290018.83000HepG2NELFE
TBCAENSG00000171530.92250.779303102.72430-0.4631010.082309.01940HepG2RECQL
TBCAENSG00000171530.91132.666801469.24510-0.375403.492802.81060HepG2RPS19
TBCAENSG00000171530.91059.907801489.58290-0.491004.505803.49880HepG2RPS2
TBCAENSG00000171530.91846.162001162.238600.667508.301707.27500HepG2SAFB2
TBCAENSG00000171530.91181.851201474.70000-0.319402.176401.33840HepG2SERBP1
TBCAENSG00000171530.93130.668802286.705400.453103.168702.41610HepG2SF3B1
TBCAENSG00000171530.92371.568503116.23440-0.394007.534106.63690HepG2SF3B4
TBCAENSG00000171530.92007.796503896.86380-0.956702.807601.34760HepG2SFPQ
TBCAENSG00000171530.91596.523601355.329700.236203.048202.37740HepG2SMN1
TBCAENSG00000171530.92220.353903252.75800-0.5509015.1120014.19590HepG2SRSF1
TBCAENSG00000171530.91936.955702451.77980-0.340005.483204.64550HepG2SRSF5
TBCAENSG00000171530.91485.489101937.26280-0.383102.195001.56690HepG2SRSF7
TBCAENSG00000171530.91990.244802646.36430-0.411108.329807.46400HepG2SRSF9
TBCAENSG00000171530.92477.448402788.38380-0.170602.141201.58100HepG2SUCLG1
TBCAENSG00000171530.92710.930902044.387400.407002.610201.32710HepG2SUGP2
TBCAENSG00000171530.92019.770701383.738300.545505.301604.41380HepG2SUPV3L1
TBCAENSG00000171530.92204.690602923.93880-0.407306.485205.68950HepG2TAF15
TBCAENSG00000171530.91070.894802251.95280-1.0724021.6499019.98580HepG2TARDBP
TBCAENSG00000171530.91977.026102686.45410-0.442405.730704.53960HepG2TIA1
TBCAENSG00000171530.91667.341001268.021300.394904.619304.00790HepG2TIAL1
TBCAENSG00000171530.91643.182001279.506300.360803.137202.54520HepG2TRIM56
TBCAENSG00000171530.91987.361402425.94780-0.287702.712901.84840HepG2TUFM
TBCAENSG00000171530.91917.351004181.39300-1.124903.375802.28160HepG2U2AF2
TBCAENSG00000171530.92041.160402567.79130-0.331102.302001.54380HepG2UBE2L3
TBCAENSG00000171530.91623.302601904.68910-0.230602.844702.13740HepG2UPF1
TBCAENSG00000171530.91776.385701267.252600.487103.223402.13750HepG2UPF2
TBCAENSG00000171530.92350.426801362.136700.7870011.380209.92860HepG2XRN2
TBCAENSG00000171530.93376.064002094.794000.6884029.6483028.34930HepG2ZNF622
TBCAENSG00000171530.92005.490903647.21450-0.8628014.9991013.78450K562AQR
TBCAENSG00000171530.91532.224101884.17600-0.298304.068502.88720K562BCLAF1
TBCAENSG00000171530.91577.684402699.11710-0.774703.169601.62700K562BUD13
TBCAENSG00000171530.93386.563306067.61700-0.841306.836505.11310K562CNOT7
TBCAENSG00000171530.93068.413003967.95750-0.370904.282402.88540K562CPEB4
TBCAENSG00000171530.91200.675501429.42840-0.251602.372201.40380K562CSTF2
TBCAENSG00000171530.92007.607601652.021000.281102.701201.39780K562DDX27
TBCAENSG00000171530.93532.573904105.50100-0.216802.748202.09950K562DDX47
TBCAENSG00000171530.94205.088103684.964400.190402.307501.51780K562DKC1
TBCAENSG00000171530.91148.398701481.97150-0.367902.618701.73370K562EFTUD2
TBCAENSG00000171530.91485.240201885.99680-0.344604.785803.17370K562EIF2S1
TBCAENSG00000171530.92363.608302885.16440-0.287702.579001.88010K562EIF2S2
TBCAENSG00000171530.91133.759401586.85860-0.485103.521202.34120K562EIF3D
TBCAENSG00000171530.91586.190202141.62750-0.433106.651005.43050K562EIF3G
TBCAENSG00000171530.93624.627104437.29830-0.291802.146201.31320K562EIF4G2
TBCAENSG00000171530.91550.915801971.75230-0.346403.576302.11020K562EXOSC5
TBCAENSG00000171530.91910.255802922.17100-0.6133013.3489011.10240K562GLRX3
TBCAENSG00000171530.93088.685205442.92970-0.817406.091003.50010K562HNRNPA0
TBCAENSG00000171530.91854.256602262.60760-0.287102.718501.65520K562HNRNPA1
TBCAENSG00000171530.91067.564502149.61510-1.0098022.5641020.93800K562HNRNPC
TBCAENSG00000171530.91406.623501919.40320-0.448405.058203.45110K562HNRNPF
TBCAENSG00000171530.94378.694302290.924900.934507.157505.55000K562HNRNPM
TBCAENSG00000171530.91381.363902505.54850-0.8590023.2651020.85260K562HNRNPU
TBCAENSG00000171530.94888.892303776.609600.372303.733602.81430K562HSPD1
TBCAENSG00000171530.94560.257403634.342500.327304.104903.07360K562KIF1C
TBCAENSG00000171530.94983.263104071.406200.291503.223402.22860K562MBNL1
TBCAENSG00000171530.92452.572603072.27130-0.325005.924804.77390K562MTPAP
TBCAENSG00000171530.92289.599103413.62820-0.5762016.2121014.61300K562NSUN2
TBCAENSG00000171530.93227.354905829.18470-0.852906.738404.82940K562PABPC1
TBCAENSG00000171530.91647.788102228.82430-0.435804.750803.46010K562PCBP2
TBCAENSG00000171530.91779.149402508.05570-0.495404.638003.56190K562PCBP3
TBCAENSG00000171530.91492.999901923.71110-0.365703.891902.93530K562POLR2G
TBCAENSG00000171530.94077.052503161.825500.366703.389602.46610K562PPIG
TBCAENSG00000171530.93741.948105396.77280-0.528303.760201.61880K562PPIL4
TBCAENSG00000171530.92061.885901442.125900.515705.613104.54320K562PRPF8
TBCAENSG00000171530.94489.867103396.056200.402702.118001.63030K562PUS1
TBCAENSG00000171530.93863.470703309.242300.223302.656802.07430K562RBM15
TBCAENSG00000171530.91547.764802333.86690-0.592507.867906.35630K562RBM22
TBCAENSG00000171530.91644.552902069.37330-0.331502.942601.56210K562RBM25
TBCAENSG00000171530.91437.843501758.13380-0.290102.632201.66700K562RCC2
TBCAENSG00000171530.91131.201901469.05180-0.377002.216401.48920K562RPS19
TBCAENSG00000171530.93343.233405526.47630-0.725104.507102.45820K562SBDS
TBCAENSG00000171530.92323.271503368.29230-0.5359011.8144010.22770K562SF3A3
TBCAENSG00000171530.91835.627602268.65320-0.305603.287702.35420K562SF3B4
TBCAENSG00000171530.9983.567301666.69240-0.760902.251101.34700K562SRFBP1
TBCAENSG00000171530.92535.995103450.88030-0.4444012.2217010.42970K562SRPK2
TBCAENSG00000171530.92000.976002385.64860-0.253702.259201.61180K562SRSF1
TBCAENSG00000171530.91059.595701853.77160-0.806908.270906.58770K562TIAL1
TBCAENSG00000171530.91636.392202184.21940-0.416605.435404.31430K562U2AF2
TBCAENSG00000171530.92138.362503619.53770-0.7593028.0064026.02360K562UPF1
TBCAENSG00000171530.92079.905103097.13170-0.574409.456107.79640K562WDR3
TBCAENSG00000171530.93036.639204108.48340-0.436105.256404.00410K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBCA is not available on ENCORE database.





1 RBPs can affect the splicing of TBCA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSTBCAENSG00000171530.9chr5-7698909076989255769890907698917777004066770041720.087000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBCA is not avaliable on ENCORE database.