ATP2A1

General Information

Gene Name       : ATP2A1
Gene ID             : ENSG00000196296.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATP2A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATP2A1ENSG00000196296.131.160.370.76ENCSR000AEF
HepG2ATP2A1ENSG00000196296.1319.5114.8417.18ENCSR985KAT
K562ATP2A1ENSG00000196296.131.291.201.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATP2A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATP2A1 RNA is bound by 17 proteins.  







eCLIP assay for ATP2A1 is not avaliable on ENCORE database.





17 proteins are bound to ATP2A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162891562828915696+3'-UTR5.7057515.30086HepG2PCBP2
chr162889229728892341+3'-UTR,5'-UTR,CDS,intron-Proximal4.851839.58174HepG2PPIG
chr162891541828915516+3'-UTR,CDS,intron-Proximal4.8900425.28053HepG2SF3B4
chr162891500328915122+3'-UTR,CDS,intron-Distal,intron-Proximal4.1543313.67813HepG2DDX59
chr162891503228915146+3'-UTR,intron-Distal,intron-Proximal3.077817.38783HepG2HNRNPK
chr162891541328915510+3'-UTR,CDS,intron-Proximal7.2251718.72535HepG2SF3A3
chr162891554828915605+3'-UTR3.548634.71371HepG2GRWD1
chr162891564528915699+3'-UTR5.9814916.21662HepG2HNRNPK
chr162891538628915524+3'-UTR,CDS,intron-Distal,intron-Proximal4.039456.34818HepG2LSM11
chr162890955228909560+3'-UTR,CDS,intron-Proximal3.267183.59112HepG2PPIG
chr162889377128893802+3'-UTR,5'-UTR,CDS,intron-Proximal5.591039.44903HepG2PPIG
chr162890967028909708+3'-UTR,CDS4.100896.36347HepG2PPIG
chr162891569928915747+3'-UTR3.885566.52594HepG2HNRNPK
chr162891562828915753+3'-UTR4.294008.73859HepG2LSM11
chr162889223528892264+3'-UTR,5'-UTR,CDS,intron-Proximal4.127127.49899HepG2PPIG
chr162889086628890902+5'-UTR,CDS3.569496.82013HepG2PPIG
chr162889052328890588+5'-UTR,intron-Distal,intron-Proximal3.833213.32156HepG2DDX59
chr162889034728890404+5'-UTR,CDS,intron-Proximal4.702465.86025HepG2SF3B4
chr162889080428890853+5'-UTR,CDS,intron-Proximal3.811398.36335HepG2U2AF2
chr162888987828889974+5'-UTR3.700978.09122HepG2XRN2
chr162889048128890651+5'-UTR,intron-Distal,intron-Proximal4.8735215.58855HepG2HNRNPK
chr162889008628890155+CDS,intron-Proximal3.091848.60031HepG2PRPF8
chr162891393628913984+CDS3.352455.47500HepG2PPIG
chr162889874728898816+CDS5.4661610.41518HepG2PPIG
chr162889901928899033+CDS3.313733.59112HepG2PPIG
chr162889040428890457+CDS,intron-Proximal5.3990813.10316HepG2EFTUD2
chr162889040328890448+CDS,intron-Proximal3.539128.85896HepG2U2AF2
chr162890576028905832+CDS,intron-Distal,intron-Proximal3.639675.11028HepG2PCBP2
chr162889040428890454+CDS,intron-Proximal3.107896.62144HepG2U2AF1
chr162891410828914131+CDS4.584684.67689HepG2PPIG
chr162889385428893910+CDS4.712477.79455HepG2PPIG
chr162890570328905760+intron-Distal,intron-Proximal3.339943.15612HepG2PCBP2
chr162891535528915479+intron-Distal,intron-Proximal3.283944.63188HepG2CDC40
chr162891534928915373+intron-Distal4.808415.27053HepG2PPIG
chr162891535428915440+intron-Distal,intron-Proximal3.506045.83620HepG2ZC3H11A
chr162889541628895497+intron-Distal4.472104.40847HepG2PTBP1
chr162889598728896060+intron-Proximal4.517804.50934HepG2RBFOX2
chr162891543628915486+intron-Proximal4.170996.13941HepG2DDX59
chr162890608228906139+intron-Proximal3.663468.07862HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATP2A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATP2A1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of ATP2A1.  








The Knockdown/knockout RNA-Seq assay for ATP2A1 is not available on ENCORE database.





93 RBPs can affect the gene expression of ATP2A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATP2A1ENSG00000196296.9665.85400346.642000.941707.121205.61410HepG2ADAR
ATP2A1ENSG00000196296.9212.74000472.38690-1.150908.132907.27280HepG2AKAP1
ATP2A1ENSG00000196296.9557.41890317.287100.812905.165703.88060HepG2BCCIP
ATP2A1ENSG00000196296.9853.97920278.986901.6139030.1954028.58130HepG2BOP1
ATP2A1ENSG00000196296.9301.40320487.43920-0.693506.035204.95280HepG2CALR
ATP2A1ENSG00000196296.9966.07880687.575900.490502.947301.93990HepG2CCAR1
ATP2A1ENSG00000196296.9548.176101092.86800-0.995402.720401.96290HepG2CNOT7
ATP2A1ENSG00000196296.9296.17930195.936400.596002.846601.75590HepG2CSTF2
ATP2A1ENSG00000196296.9304.16440489.80700-0.687403.807802.12160HepG2CSTF2T
ATP2A1ENSG00000196296.9379.41610526.97500-0.474003.034602.32610HepG2DDX21
ATP2A1ENSG00000196296.9323.74990516.15440-0.672905.304204.03210HepG2DDX24
ATP2A1ENSG00000196296.9473.10290311.977200.600602.849302.06500HepG2DDX55
ATP2A1ENSG00000196296.9722.42040388.806400.893707.830206.84170HepG2DDX6
ATP2A1ENSG00000196296.9493.19080349.012200.498803.516002.73020HepG2DNAJC21
ATP2A1ENSG00000196296.9485.87670346.020800.489603.333202.62990HepG2DNAJC2
ATP2A1ENSG00000196296.9284.83150485.66240-0.769803.270202.05660HepG2AGO1
ATP2A1ENSG00000196296.9543.43830373.628100.540403.331702.68540HepG2EIF2S1
ATP2A1ENSG00000196296.9645.45290402.082800.682704.065703.23970HepG2EIF4B
ATP2A1ENSG00000196296.9977.33450737.729700.405704.501303.76870HepG2ETF1
ATP2A1ENSG00000196296.9585.08890406.372500.525803.525802.64310HepG2FUBP3
ATP2A1ENSG00000196296.91235.15500386.478301.6761031.5580029.38180HepG2G3BP1
ATP2A1ENSG00000196296.9788.34980410.438000.9416010.351508.62710HepG2G3BP2
ATP2A1ENSG00000196296.9664.88760290.258401.1957012.9372011.64940HepG2GPKOW
ATP2A1ENSG00000196296.9620.36270464.437700.417503.678102.86130HepG2HNRNPF
ATP2A1ENSG00000196296.91720.07280391.597602.1349062.7240059.79430HepG2HNRNPK
ATP2A1ENSG00000196296.9417.62280624.69660-0.581006.722405.71660HepG2HNRNPL
ATP2A1ENSG00000196296.9540.16850277.004000.963406.537005.61500HepG2HNRNPLL
ATP2A1ENSG00000196296.9132.06030466.23350-1.8199025.0909022.78690HepG2HNRNPM
ATP2A1ENSG00000196296.9264.28900389.36820-0.559002.244701.69300HepG2HNRNPU
ATP2A1ENSG00000196296.9695.19240457.338500.604006.116605.08110HepG2IGF2BP1
ATP2A1ENSG00000196296.9587.60300392.808200.580903.835703.05220HepG2IGF2BP2
ATP2A1ENSG00000196296.9660.61800397.721600.732008.175006.98250HepG2ILF2
ATP2A1ENSG00000196296.9685.53280395.170100.794705.817804.31650HepG2KHSRP
ATP2A1ENSG00000196296.9694.17020512.048100.438904.920303.56520HepG2KIF1C
ATP2A1ENSG00000196296.9434.68800546.84230-0.331102.026101.32900HepG2MSI2
ATP2A1ENSG00000196296.9741.07670429.032300.788406.881305.90260HepG2NCBP2
ATP2A1ENSG00000196296.9856.151201192.65040-0.478202.783301.34940HepG2NKRF
ATP2A1ENSG00000196296.9930.42820680.050000.452203.016502.22100HepG2NOL12
ATP2A1ENSG00000196296.9448.97050245.657800.869902.919702.15100HepG2NSUN2
ATP2A1ENSG00000196296.9723.99570381.956000.922509.483708.16430HepG2PABPC4
ATP2A1ENSG00000196296.9326.99430441.84790-0.434303.128802.49010HepG2PCBP1
ATP2A1ENSG00000196296.91566.46290980.355000.676003.851802.05500HepG2PNPT1
ATP2A1ENSG00000196296.9517.69740347.280100.575904.700103.76610HepG2PPIL4
ATP2A1ENSG00000196296.91087.87160649.187600.7447010.159509.11520HepG2PUF60
ATP2A1ENSG00000196296.9506.94300689.16510-0.443004.681703.95280HepG2PUM1
ATP2A1ENSG00000196296.9315.89720688.64690-1.1243016.7797015.21560HepG2PUM2
ATP2A1ENSG00000196296.9877.82990486.922100.8502012.5871011.39710HepG2QKI
ATP2A1ENSG00000196296.9268.18070501.59890-0.903303.923103.08820HepG2RAVER1
ATP2A1ENSG00000196296.9442.89090616.60330-0.477404.095503.49680HepG2RBM22
ATP2A1ENSG00000196296.9562.97420441.914900.349202.078901.48910HepG2RBM25
ATP2A1ENSG00000196296.9345.81150462.91970-0.420802.489501.48480HepG2RCC2
ATP2A1ENSG00000196296.9631.72610500.358700.336202.377901.86950HepG2NELFE
ATP2A1ENSG00000196296.9727.50020466.019400.642507.961306.99530HepG2RECQL
ATP2A1ENSG00000196296.9379.18390525.72130-0.471403.101402.25370HepG2RPS2
ATP2A1ENSG00000196296.9558.41520346.731900.687407.066106.10400HepG2SAFB2
ATP2A1ENSG00000196296.9540.91030253.291901.094503.037701.50450HepG2SFPQ
ATP2A1ENSG00000196296.9508.38660305.048000.736803.433202.55760HepG2SNRNP70
ATP2A1ENSG00000196296.9392.38230488.58270-0.316301.918801.50430HepG2SRSF1
ATP2A1ENSG00000196296.9798.41580641.006700.316701.841701.31660HepG2SRSF5
ATP2A1ENSG00000196296.9597.42600456.294600.388703.198802.45650HepG2SRSF7
ATP2A1ENSG00000196296.9589.22840397.489500.567805.451704.72220HepG2SRSF9
ATP2A1ENSG00000196296.9690.60370439.161700.653007.709706.84990HepG2TAF15
ATP2A1ENSG00000196296.9543.89090270.142101.009504.074903.21490HepG2TARDBP
ATP2A1ENSG00000196296.9707.97280403.525000.8109010.000908.43210HepG2TIA1
ATP2A1ENSG00000196296.9949.39480378.231301.3276021.7413020.58670HepG2TIAL1
ATP2A1ENSG00000196296.9987.59030381.733401.3712022.9103021.48710HepG2TRIM56
ATP2A1ENSG00000196296.9276.43730578.10240-1.0644011.6920010.37170HepG2U2AF1
ATP2A1ENSG00000196296.9558.91290183.426601.6073021.9687019.91700HepG2UCHL5
ATP2A1ENSG00000196296.9884.00890659.303000.423005.026804.12820HepG2UPF1
ATP2A1ENSG00000196296.9553.99660284.285800.962405.877504.37850HepG2UPF2
ATP2A1ENSG00000196296.9301.98240636.53230-1.0758017.5019016.18780HepG2UTP3
ATP2A1ENSG00000196296.9318.61790551.82710-0.792403.771202.53230HepG2XRCC6
ATP2A1ENSG00000196296.9720.52790305.693801.2369013.6175012.02590HepG2XRN2
ATP2A1ENSG00000196296.9827.34580420.980400.9746017.7150016.27360HepG2ZC3H8
ATP2A1ENSG00000196296.9308.61760181.061300.769204.273403.57420K562AQR
ATP2A1ENSG00000196296.9191.2392092.977301.040302.627901.77850K562BOP1
ATP2A1ENSG00000196296.9260.98870151.129000.788103.108601.97410K562CNOT7
ATP2A1ENSG00000196296.9205.30320136.541100.588302.555401.55560K562DDX3X
ATP2A1ENSG00000196296.9107.34000198.74330-0.888703.300402.59920K562DDX47
ATP2A1ENSG00000196296.957.73190119.59590-1.050702.761601.76030K562EIF3A
ATP2A1ENSG00000196296.9165.06740100.607900.714202.528001.71110K562FMR1
ATP2A1ENSG00000196296.919.3995068.37760-1.817505.381504.32000K562G3BP2
ATP2A1ENSG00000196296.9205.7613094.352901.124706.466905.25680K562GPKOW
ATP2A1ENSG00000196296.945.5286085.33330-0.906302.239401.40560K562HNRNPM
ATP2A1ENSG00000196296.9149.0232097.648800.609802.353701.50880K562MATR3
ATP2A1ENSG00000196296.9233.61430169.285300.464602.109201.39770K562MTPAP
ATP2A1ENSG00000196296.9263.93560188.082900.488702.454901.74790K562NSUN2
ATP2A1ENSG00000196296.9212.30330130.996500.696503.083801.55640K562NUSAP1
ATP2A1ENSG00000196296.9351.68980168.153401.064404.480903.13830K562PABPN1
ATP2A1ENSG00000196296.9355.82980180.283300.980806.883305.56990K562PCBP3
ATP2A1ENSG00000196296.9273.13800138.276400.982007.137705.86420K562POLR2G
ATP2A1ENSG00000196296.9401.70990199.851301.007103.964602.10370K562PPP1R8
ATP2A1ENSG00000196296.9223.59030119.231800.907002.762001.85920K562PSIP1
ATP2A1ENSG00000196296.9453.87190267.935200.760302.399501.64150K562PUF60
ATP2A1ENSG00000196296.937.7131081.38200-1.109602.576501.78930K562RPS19
ATP2A1ENSG00000196296.9113.05050205.33100-0.861003.672102.49780K562RPS3
ATP2A1ENSG00000196296.9251.08000137.686700.866703.715101.88620K562SBDS
ATP2A1ENSG00000196296.9413.42170187.374601.141605.130103.13180K562SFPQ
ATP2A1ENSG00000196296.9189.7441093.224001.025205.561804.56540K562SRSF1
ATP2A1ENSG00000196296.987.49340138.70460-0.664802.465001.69160K562SYNCRIP
ATP2A1ENSG00000196296.9169.0787090.995200.893704.244903.19890K562TIA1
ATP2A1ENSG00000196296.9159.4265089.343200.835403.548802.28090K562TRA2A
ATP2A1ENSG00000196296.9252.84060121.902101.052406.868705.21910K562TRIM56
ATP2A1ENSG00000196296.9255.20690170.644000.580603.045202.12870K562WDR3
ATP2A1ENSG00000196296.974.31850141.09030-0.924802.993001.33820K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATP2A1 is not available on ENCORE database.





15 RBPs can affect the splicing of ATP2A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.440000.000000.00001includedHepG2HNRNPK
SEATP2A1ENSG00000196296.9chr16+289150202891506228914643289147612891550028915785-0.203000.001400.09317excludedHepG2TBRG4
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.428000.000490.04498includedHepG2QKI
SEATP2A1ENSG00000196296.9chr16+289150202891506228914643289147612891550028915785-0.263000.000000.00001excludedHepG2U2AF2
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.371000.000000.00051includedHepG2SFPQ
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.522000.000030.00272includedHepG2PTBP1
SEATP2A1ENSG00000196296.9chr16+289150202891506228914643289147612891550028915785-0.197000.001860.09277excludedHepG2FTO
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.442000.000060.00943includedHepG2DDX6
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.290000.000310.05369includedHepG2RBM15
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.593000.000000.00008includedHepG2SRSF1
SEATP2A1ENSG00000196296.9chr16+2890582528905928289054752890556428906142289062740.370000.000180.00755includedHepG2SF3A3
SEATP2A1ENSG00000196296.9chr16+2890582528905928289054752890556428906142289062740.346000.001040.09664includedHepG2SSB
SEATP2A1ENSG00000196296.9chr16+289058252890592828905475289055642890614228906274-0.320000.001190.05487excludedHepG2PCBP1
SEATP2A1ENSG00000196296.9chr16+2891502028915062289146432891476128915500289157850.500000.000340.07392includedHepG2EIF3D
SEATP2A1ENSG00000196296.9chr16+289150202891506228914643289147612891550028915785-0.395000.000330.01615excludedHepG2HNRNPC
A3SSATP2A1ENSG00000196296.9chr16+2891350428913707289135562891370728913183289134040.159000.001130.08516longerHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATP2A1 is not avaliable on ENCORE database.