RNF34

General Information

Gene Name       : RNF34
Gene ID             : ENSG00000170633.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF34)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF34ENSG00000170633.1654.3973.8264.10ENCSR000AEF
HepG2RNF34ENSG00000170633.1652.3140.9446.62ENCSR985KAT
K562RNF34ENSG00000170633.1637.5636.4036.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF34 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF34 RNA is bound by 9 proteins.  







eCLIP assay for RNF34 is not avaliable on ENCORE database.





9 proteins are bound to RNF34 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12121837999121838060+5'-UTR,CDS,intron-Proximal3.306839.63395HepG2PRPF8
chr12121840526121840583+5'-UTR,intron-Distal,intron-Proximal3.890594.36528HepG2U2AF2
chr12121837971121838027+5'-UTR,CDS,intron-Proximal4.788095.56813HepG2PPIG
chr12121840590121840738+5'-UTR,CDS,intron-Distal,intron-Proximal3.702369.16313K562KHSRP
chr12121837970121838022+5'-UTR,CDS,intron-Proximal4.381553.71613K562UCHL5
chr12121858438121858494+CDS,intron-Distal3.381554.06757K562UCHL5
chr12121855708121855819+CDS,intron-Distal,intron-Proximal3.054953.94281K562PRPF8
chr12121858494121858579+CDS,intron-Distal4.988617.60619K562UCHL5
chr12121858440121858524+CDS,intron-Distal4.033784.93978HepG2BCLAF1
chr12121858335121858407+CDS,intron-Distal,intron-Proximal3.239725.37841K562SF3B4
chr12121858376121858421+CDS,intron-Distal,intron-Proximal3.467583.12941K562UCHL5
chr12121861142121861213+CDS,intron-Proximal4.343424.42765K562SF3B4
chr12121858091121858135+CDS,intron-Distal3.674034.06757K562UCHL5
chr12121840405121840498+intron-Distal,intron-Proximal3.651573.95921HepG2U2AF2
chr12121856529121856596+intron-Distal3.667215.50447HepG2ILF3
chr12121855730121855791+intron-Distal,intron-Proximal3.435446.75088K562TIA1
chr12121856195121856319+intron-Distal3.499055.35459K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF34 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF34 is not available on ENCORE database.

  • 70 RBPs can affect the levels of RNF34.  








The Knockdown/knockout RNA-Seq assay for RNF34 is not available on ENCORE database.





70 RBPs can affect the gene expression of RNF34 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF34ENSG00000170633.12953.04360717.323400.409802.718901.78460HepG2ABCF1
RNF34ENSG00000170633.12903.97440619.463300.545207.961407.03830HepG2ACO1
RNF34ENSG00000170633.121006.21790551.390800.867708.305307.43780HepG2AKAP1
RNF34ENSG00000170633.12797.11450622.389800.356903.352502.51820HepG2AKAP8L
RNF34ENSG00000170633.12369.11460765.51190-1.0524013.8592012.66530HepG2BOP1
RNF34ENSG00000170633.12632.91760433.455800.546003.794202.89840HepG2CIRBP
RNF34ENSG00000170633.12537.28930381.533900.493802.120601.45660HepG2CNOT7
RNF34ENSG00000170633.12503.42300702.79120-0.481303.358402.60900HepG2CPSF6
RNF34ENSG00000170633.121220.32240773.688900.6573011.3977010.26790HepG2CELF1
RNF34ENSG00000170633.12649.53290831.92200-0.357003.866303.01370HepG2DAZAP1
RNF34ENSG00000170633.12417.82290572.92370-0.455504.761103.70620HepG2DDX19B
RNF34ENSG00000170633.12828.89690528.212300.650005.387204.54140HepG2DDX3X
RNF34ENSG00000170633.12418.53780520.93650-0.315702.015001.40550HepG2DNAJC21
RNF34ENSG00000170633.12626.03260436.198000.521202.434201.87630HepG2EIF2S1
RNF34ENSG00000170633.12495.39100362.463000.450602.425401.57370HepG2EIF3D
RNF34ENSG00000170633.12691.70910482.074500.520803.273102.57980HepG2EIF4A3
RNF34ENSG00000170633.12703.29140469.320500.583403.281402.53490HepG2EIF4B
RNF34ENSG00000170633.12616.83760786.20740-0.350002.205901.47280HepG2EIF4G2
RNF34ENSG00000170633.12340.97320477.13360-0.484703.192501.97420HepG2FASTKD2
RNF34ENSG00000170633.12951.15180724.380900.392802.462301.73310HepG2FIP1L1
RNF34ENSG00000170633.12366.10560703.97590-0.943304.064002.83220HepG2FTO
RNF34ENSG00000170633.12770.30250486.318900.663405.542004.58570HepG2FXR1
RNF34ENSG00000170633.12651.60660451.171100.530203.505602.76020HepG2G3BP1
RNF34ENSG00000170633.12462.57500322.718000.519303.035002.09430HepG2GEMIN5
RNF34ENSG00000170633.12482.50230796.69490-0.723506.056505.13570HepG2GPKOW
RNF34ENSG00000170633.12443.72070584.99000-0.398802.362501.71650HepG2HNRNPC
RNF34ENSG00000170633.12735.42730926.58430-0.333303.294502.51690HepG2HNRNPF
RNF34ENSG00000170633.12473.92550760.29830-0.681905.934005.04890HepG2HNRNPLL
RNF34ENSG00000170633.12648.78050499.948200.375902.830901.86960HepG2HNRNPM
RNF34ENSG00000170633.12423.02560581.12280-0.458104.250103.51160HepG2HNRNPU
RNF34ENSG00000170633.12681.62010912.42050-0.420703.934203.08340HepG2IGF2BP1
RNF34ENSG00000170633.12726.63690458.619400.663805.592904.66440HepG2IGF2BP2
RNF34ENSG00000170633.12708.36750430.338700.718902.577801.63050HepG2IGF2BP3
RNF34ENSG00000170633.12444.81160566.27910-0.348302.911401.87090HepG2KIF1C
RNF34ENSG00000170633.12927.37100486.488400.9306010.580609.32530HepG2MAGOH
RNF34ENSG00000170633.12723.31500489.223200.564003.721102.99940HepG2MATR3
RNF34ENSG00000170633.12485.74850775.34790-0.674603.808702.65960HepG2MTPAP
RNF34ENSG00000170633.12785.34190500.757000.649105.153804.30140HepG2NCBP2
RNF34ENSG00000170633.12441.71960674.13070-0.609904.683403.71890HepG2NSUN2
RNF34ENSG00000170633.12711.27400462.047100.622307.068906.17200HepG2PCBP1
RNF34ENSG00000170633.12368.42730518.31630-0.492504.131303.24740HepG2PPIL4
RNF34ENSG00000170633.12857.80780470.171200.8674015.5654014.47030HepG2PTBP1
RNF34ENSG00000170633.12915.70020630.966300.537207.839006.89020HepG2PUS1
RNF34ENSG00000170633.12745.34700515.085700.533002.326501.67600HepG2RAVER1
RNF34ENSG00000170633.121175.55790908.280500.372002.254801.77400HepG2RBM22
RNF34ENSG00000170633.12944.95180523.238000.8527015.0648013.99200HepG2NELFE
RNF34ENSG00000170633.12634.35850487.356600.380203.128502.47870HepG2RECQL
RNF34ENSG00000170633.12469.59650352.721900.412802.454901.87210HepG2RPS19
RNF34ENSG00000170633.12782.37970526.397400.571604.451903.44940HepG2RPS2
RNF34ENSG00000170633.12733.56380537.349200.449002.891201.78920HepG2RPS5
RNF34ENSG00000170633.12294.49050517.51950-0.8134010.331909.20970HepG2SAFB2
RNF34ENSG00000170633.121020.79540657.017500.635604.649003.76140HepG2SF3A3
RNF34ENSG00000170633.12587.57340752.56030-0.357002.172401.54240HepG2SF3B1
RNF34ENSG00000170633.12707.46410489.471400.531305.725604.92690HepG2SF3B4
RNF34ENSG00000170633.12551.16260755.04460-0.454105.219904.30580HepG2SLBP
RNF34ENSG00000170633.121208.52240510.917401.2420035.0563033.79060HepG2SRSF1
RNF34ENSG00000170633.12943.66520777.500000.279302.411601.82260HepG2SRSF5
RNF34ENSG00000170633.121146.03880884.237200.374104.688103.91580HepG2SUCLG1
RNF34ENSG00000170633.12468.96590740.98570-0.660005.997404.98680HepG2TARDBP
RNF34ENSG00000170633.12319.30470569.71560-0.8353011.5976010.55990HepG2TRIM56
RNF34ENSG00000170633.121029.48430619.802300.731908.480307.37740HepG2U2AF1
RNF34ENSG00000170633.12861.12870562.548800.614208.817207.84600HepG2UTP3
RNF34ENSG00000170633.12981.39640786.862000.318602.149901.57100K562AKAP8L
RNF34ENSG00000170633.12587.27180751.61290-0.356003.095702.08350K562BCLAF1
RNF34ENSG00000170633.12475.67200687.36750-0.531103.863302.83140K562BOP1
RNF34ENSG00000170633.121291.989401028.659600.328703.715702.97560K562DDX47
RNF34ENSG00000170633.121187.990001008.745400.235902.017401.38660K562EIF2S2
RNF34ENSG00000170633.12909.13190688.522000.400902.525101.54230K562EIF3D
RNF34ENSG00000170633.12791.71520537.122800.559605.177504.05360K562EIF4A3
RNF34ENSG00000170633.12879.46590558.586800.654709.182708.15370K562FXR1
RNF34ENSG00000170633.12494.39490621.35060-0.329701.899701.39370K562HNRNPC
RNF34ENSG00000170633.121431.192501134.946100.334502.443301.69220K562HSPD1
RNF34ENSG00000170633.12415.82270557.10370-0.422002.482001.63160K562PSIP1
RNF34ENSG00000170633.12901.02910683.652200.398203.476102.74270K562PTBP1
RNF34ENSG00000170633.121083.23370780.395700.473004.067603.42820K562PUS1
RNF34ENSG00000170633.12999.41410760.341100.394303.786803.10900K562RBM15
RNF34ENSG00000170633.12836.40230637.394400.391902.414801.65400K562RPS19
RNF34ENSG00000170633.12956.41220686.418400.478404.976603.86820K562SYNCRIP
RNF34ENSG00000170633.12811.009301089.04240-0.425305.388203.60720K562TROVE2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF34 is not available on ENCORE database.





25 RBPs can affect the splicing of RNF34 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.169000.000280.07907excludedK562IGF2BP2
SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.114000.000130.06768excludedK562SMNDC1
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.123000.000080.00245includedHepG2U2AF1
SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.065000.000010.00062excludedK562AKAP8L
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.148000.000570.05098includedK562XRCC6
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.131000.000010.00618includedK562PUM1
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.137000.000090.03110includedK562WDR43
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.161000.000110.01454includedHepG2QKI
SERNF34ENSG00000170633.12chr12+1218539611218541801218379461218380211218556631218557140.087000.003580.04060includedHepG2U2AF2
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.135000.002970.08807includedK562FXR1
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.100000.000110.02714includedK562DROSHA
SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.058000.000160.00368excludedK562PUS1
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.281000.000000.00001includedHepG2SFPQ
SERNF34ENSG00000170633.12chr12+1218426511218429161218405441218406101218539611218541800.628000.000000.00052includedHepG2FTO
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.183000.000000.00001includedK562APOBEC3C
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.593000.000010.00060includedK562U2AF1
SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.112000.000210.02358excludedHepG2DDX6
SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.228000.000050.03265excludedHepG2GRSF1
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.116000.000030.02460includedK562PUM2
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.182000.000010.01620includedK562LARP7
SERNF34ENSG00000170633.12chr12+121840544121840610121837921121838021121853961121854180-0.108000.000170.08403excludedK562HLTF
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.139000.000330.07221includedHepG2EIF3D
SERNF34ENSG00000170633.12chr12+121853961121854180121837946121838021121855663121855714-0.231000.002750.08655excludedK562SF3B1
SERNF34ENSG00000170633.12chr12+1218405441218406101218379211218380211218539611218541800.223000.002410.07769includedK562PTBP1
MXERNF34ENSG00000170633.12chr12+1218405441218406101218556631218557141218379211218380211218580441218581370.204000.000040.004681includedHepG2BCCIP
MXERNF34ENSG00000170633.12chr12+1218405441218406101218554841218557141218379211218380211218580441218581370.174000.001760.050341includedK562EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF34 is not avaliable on ENCORE database.