PATZ1

General Information

Gene Name : PATZ1
Gene ID : ENSG00000100105.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PATZ1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PATZ1	ENSG00000100105.17	9.01	11.78	10.39	ENCSR000AEF
HepG2	PATZ1	ENSG00000100105.17	25.13	20.76	22.95	ENCSR985KAT
K562	PATZ1	ENSG00000100105.17	4.20	3.64	3.92	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PATZ1 is not avaliable on ENCORE database.

Proteins bound to RNA

PATZ1 RNA is bound by 23 proteins.

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eCLIP assay for PATZ1 is not avaliable on ENCORE database.

23 proteins are bound to PATZ1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	31721881	31722017	-	3'-UTR,intron-Distal	5.39851	14.31811	HepG2	DDX55
chr22	31730999	31731092	-	intron-Distal	5.74853	12.04483	HepG2	HNRNPM
chr22	31721901	31721975	-	3'-UTR,intron-Distal	6.28546	11.93389	K562	PABPC4
chr22	31722811	31722951	-	3'-UTR,CDS,intron-Distal	5.74924	11.59434	HepG2	GRSF1
chr22	31741862	31741915	-	5'-UTR,intron-Distal	3.35652	11.57368	HepG2	DDX3X
chr22	31741730	31741812	-	5'-UTR,intron-Distal,intron-Proximal	4.24018	11.48367	HepG2	SLTM
chr22	31730926	31730999	-	intron-Distal	5.61058	11.26125	HepG2	HNRNPM
chr22	31741728	31741817	-	5'-UTR,intron-Distal,intron-Proximal	3.12492	10.67683	HepG2	NKRF
chr22	31724107	31724169	-	intron-Distal	5.35089	10.47230	HepG2	HNRNPM
chr22	31738814	31738907	-	CDS,intron-Distal,intron-Proximal	3.31140	9.78963	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 44 entries

eCLIP assay for PATZ1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PATZ1 is not available on ENCORE database.
51 RBPs can affect the levels of PATZ1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PATZ1 is not available on ENCORE database.

51 RBPs can affect the gene expression of PATZ1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PATZ1	ENSG00000100105.13	790.72540	1192.23670	-0.59240	12.18690	11.24260	HepG2	ZNF622
PATZ1	ENSG00000100105.13	644.29140	354.32340	0.86250	12.61230	10.67820	K562	EIF4G2
PATZ1	ENSG00000100105.13	492.89710	261.64200	0.91360	11.38760	10.16280	K562	DDX47
PATZ1	ENSG00000100105.13	825.41430	1507.69630	-0.86920	10.11510	8.96730	HepG2	MATR3
PATZ1	ENSG00000100105.13	1002.42960	1432.16580	-0.51470	8.30840	7.46580	HepG2	PTBP1
PATZ1	ENSG00000100105.13	1128.60690	1556.36000	-0.46360	7.74200	7.04340	HepG2	SRSF1
PATZ1	ENSG00000100105.13	915.03740	1266.17830	-0.46860	7.46770	6.64120	HepG2	SRSF9
PATZ1	ENSG00000100105.13	1208.21360	1593.86770	-0.39970	5.69130	4.95900	HepG2	NELFE
PATZ1	ENSG00000100105.13	1066.28640	1407.48770	-0.40050	5.71060	4.88830	HepG2	PCBP1
PATZ1	ENSG00000100105.13	481.99460	908.49440	-0.91450	6.21430	4.84910	HepG2	PABPC1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 52 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PATZ1 is not available on ENCORE database.

8 RBPs can affect the splicing of PATZ1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PATZ1	ENSG00000100105.13	chr22	-	31737577	31737669	31731677	31731849	31738882	31738946	0.25500	0.00000	0.00001	included	HepG2	SUPV3L1
SE	PATZ1	ENSG00000100105.13	chr22	-	31737577	31737669	31731677	31731849	31738882	31738946	0.13200	0.00001	0.00712	included	HepG2	NOL12
SE	PATZ1	ENSG00000100105.13	chr22	-	31737577	31737669	31731677	31731849	31738882	31738946	0.10200	0.00003	0.00521	included	HepG2	TBRG4
SE	PATZ1	ENSG00000100105.13	chr22	-	31724772	31724845	31721794	31723295	31731677	31731849	-0.13100	0.00017	0.01568	excluded	HepG2	RBM22
SE	PATZ1	ENSG00000100105.13	chr22	-	31724772	31724910	31721789	31723295	31731677	31731849	0.25800	0.00017	0.04463	included	HepG2	EIF3D
SE	PATZ1	ENSG00000100105.13	chr22	-	31724772	31724845	31721794	31723295	31731677	31731849	0.24000	0.00055	0.09690	included	HepG2	FUS
SE	PATZ1	ENSG00000100105.13	chr22	-	31724772	31724845	31721794	31723295	31731677	31731849	-0.09600	0.00219	0.08658	excluded	HepG2	PCBP1
SE	PATZ1	ENSG00000100105.13	chr22	-	31724772	31724910	31721789	31723295	31731677	31731849	0.30500	0.00314	0.03183	included	K562	AQR

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PATZ1

General Information

Functions

Localization

Domains (AlphaFold: PATZ1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PATZ1 is not avaliable on ENCORE database.

23 proteins are bound to PATZ1 RNA:

eCLIP assay for PATZ1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PATZ1 is not available on ENCORE database.

51 RBPs can affect the gene expression of PATZ1 :

The Knockdown/knockout RNA-Seq assay for PATZ1 is not available on ENCORE database.

8 RBPs can affect the splicing of PATZ1 :

The Knockdown/knockout RNA-Seq assay for PATZ1 is not avaliable on ENCORE database.