ENCORE RBNS:EIF3D

EIF3D RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	EIF3D
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	14

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
EIF3D-20	RBNS	20-20	20	EIF3D_20.fastq.gz
EIF3D-5	RBNS	20-20	5	EIF3D_5.fastq.gz
EIF3D-80	RBNS	20-20	80	EIF3D_80.fastq.gz
EIF3D-input	CN	20-20	0	EIF3D_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:EIF3D_XRCC6-input-cntl	ENCSR790NTP	experiment	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-54	Yes	Released	2020-11-23	ENCODE4			1899
chris-burge:EIF3D	ENCSR488AUU	experiment	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			1900
chris-burge:lib-EIF3D-1	ENCLB787DGI	library	RNA Bind-n-Seq	EIF3D	PARP1-BGKcLV13-49	Yes	Released	2020-11-23	ENCODE4			1921
chris-burge:lib-EIF3D-2	ENCLB276RFU	library	RNA Bind-n-Seq	EIF3D	PARP1-BGKcLV13-50	Yes	Released	2020-11-23	ENCODE4			1922
chris-burge:lib-EIF3D-3	ENCLB957YCE	library	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			1923
chris-burge:lib-EIF3D_XRCC6-input-cntl	ENCLB712EVE	library	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-54	Yes	Released	2020-11-23	ENCODE4			1924
chris-burge:EIF3D_20.fastq.gz	ENCFF901UAU	file_fastq	RNA Bind-n-Seq	EIF3D	PARP1-BGKcLV13-49	Yes	Released	2020-11-23	ENCODE4			1962
chris-burge:EIF3D_5.fastq.gz	ENCFF609BEU	file_fastq	RNA Bind-n-Seq	EIF3D	PARP1-BGKcLV13-50	Yes	Released	2020-11-23	ENCODE4			1963
chris-burge:EIF3D_80.fastq.gz	ENCFF313IWB	file_fastq	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			1964
chris-burge:EIF3D_input.fastq.gz	ENCFF940HMN	file_fastq	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-54	Yes	Released	2020-11-23	ENCODE4			1965
chris-burge:EIF3D_5mer_logo0.PWM	ENCFF337UFE	file_pwm	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2005
chris-burge:EIF3D_5mer_logo1.PWM	ENCFF397EFW	file_pwm	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2006
chris-burge:EIF3D_5mer_logo2.PWM	ENCFF400IEP	file_pwm	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2007
chris-burge:EIF3D_6mer_logo0.PWM	ENCFF259EWN	file_pwm	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2008
chris-burge:EIF3D_6mer_logo1.PWM	ENCFF755RTG	file_pwm	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2009
chris-burge:EIF3D_6mer_logo2.PWM	ENCFF920TGK	file_pwm	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2010
chris-burge:EIF3D_enrichment_R.4mers.mark_adapters.txt	ENCFF290JKE	file_enrichment	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2047
chris-burge:EIF3D_enrichment_R.5mers.mark_adapters.txt	ENCFF112DCJ	file_enrichment	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2048
chris-burge:EIF3D_enrichment_R.6mers.mark_adapters.txt	ENCFF092FJB	file_enrichment	RNA Bind-n-Seq	EIF3D	EIF2AK2-BGKcLV13-53	Yes	Released	2020-11-23	ENCODE4			2049

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
EIF3D_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EIF3D_input.fastq.gz	ENCODE4
EIF3D_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EIF3D_input.fastq.gz	ENCODE4
EIF3D_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		EIF3D_input.fastq.gz	ENCODE4
EIF3D_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
EIF3D_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_5mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_5mer_logo2.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_6mer_logo2.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	EIF3D_20.fastq.gz,EIF3D_5.fastq.gz,EIF3D_80.fastq.gz,EIF3D_input.fastq.gz		ENCODE4
EIF3D_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
EIF3D_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
EIF3D_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4