IFT46

General Information

Gene Name       : IFT46
Gene ID             : ENSG00000118096.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: IFT46)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IFT46ENSG00000118096.714.7511.4513.10ENCSR000AEF
HepG2IFT46ENSG00000118096.79.4112.7411.07ENCSR985KAT
K562IFT46ENSG00000118096.711.4812.6812.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IFT46 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IFT46 RNA is bound by 2 proteins.  







eCLIP assay for IFT46 is not avaliable on ENCORE database.





2 proteins are bound to IFT46 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11118415558118415624-3'-UTR,intron-Distal,intron-Proximal4.460414.22051K562UPF1
chr11118425701118425754-CDS,intron-Distal,intron-Proximal3.898013.89948K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IFT46 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IFT46 is not available on ENCORE database.

  • 60 RBPs can affect the levels of IFT46.  








The Knockdown/knockout RNA-Seq assay for IFT46 is not available on ENCORE database.





60 RBPs can affect the gene expression of IFT46 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IFT46ENSG00000118096.3676.19740243.819201.4715017.0228015.81700HepG2AKAP1
IFT46ENSG00000118096.3233.93680162.978900.521302.639601.88800HepG2AKAP8L
IFT46ENSG00000118096.3293.26140175.675300.739203.790302.69230HepG2BCCIP
IFT46ENSG00000118096.3225.93410162.187700.478102.349201.72840HepG2CKAP4
IFT46ENSG00000118096.3243.28550112.821901.108505.408504.33580HepG2CNOT7
IFT46ENSG00000118096.3193.05670108.542000.830704.310803.00100HepG2CSTF2
IFT46ENSG00000118096.3239.72270168.927100.504902.075101.47810HepG2DDX21
IFT46ENSG00000118096.3237.14860165.203400.521402.220501.41270HepG2DDX24
IFT46ENSG00000118096.3426.64470233.597400.868906.417105.50490HepG2DDX3X
IFT46ENSG00000118096.3131.34850219.45430-0.740502.592501.64790HepG2DDX59
IFT46ENSG00000118096.3138.58170213.68990-0.624802.729201.72330HepG2DDX5
IFT46ENSG00000118096.3231.99490161.043600.526502.194401.37980HepG2EIF3D
IFT46ENSG00000118096.3242.02110159.454500.601902.982101.86550HepG2EIF3G
IFT46ENSG00000118096.3360.90100213.226500.759103.087702.41340HepG2EIF4A3
IFT46ENSG00000118096.3224.64640158.517600.502902.182701.44100HepG2EWSR1
IFT46ENSG00000118096.3466.55750266.214700.809405.696704.63090HepG2FIP1L1
IFT46ENSG00000118096.3241.40810170.761100.499401.938501.38680HepG2HNRNPA1
IFT46ENSG00000118096.3284.30120189.925200.581902.724402.03590HepG2HNRNPC
IFT46ENSG00000118096.3189.80590271.98110-0.519003.215202.49280HepG2HNRNPL
IFT46ENSG00000118096.3140.06590209.05980-0.577802.164001.60080HepG2HNRNPLL
IFT46ENSG00000118096.3266.70940188.670600.499302.753902.14810HepG2HNRNPU
IFT46ENSG00000118096.3478.64470335.636500.512002.510401.72090HepG2LARP4
IFT46ENSG00000118096.3305.36870221.421000.463701.948801.41250HepG2NCBP2
IFT46ENSG00000118096.353.12020103.11010-0.956902.573501.72470HepG2PABPC1
IFT46ENSG00000118096.3258.33380186.770300.467902.348901.56170HepG2PARN
IFT46ENSG00000118096.3328.42910212.506400.628002.710501.50310HepG2PRPF6
IFT46ENSG00000118096.3206.77650299.74660-0.535703.094902.38500HepG2PUM2
IFT46ENSG00000118096.3277.29250165.203200.747105.463904.65110HepG2PUS1
IFT46ENSG00000118096.3581.25930267.953301.1171011.8726010.95410HepG2RBM22
IFT46ENSG00000118096.3140.76660211.64960-0.588402.565001.91250HepG2RBM25
IFT46ENSG00000118096.3295.08120193.460100.609002.749401.76030HepG2RBM27
IFT46ENSG00000118096.3246.19860156.703700.651703.302202.63780HepG2RPS19
IFT46ENSG00000118096.3173.28030113.262300.613302.024801.34090HepG2RPS3A
IFT46ENSG00000118096.3181.40590270.90970-0.578603.738202.94270HepG2SLBP
IFT46ENSG00000118096.3347.02270234.000500.568403.627303.10400HepG2SRSF1
IFT46ENSG00000118096.399.75100190.37240-0.932405.668504.92770HepG2SRSF9
IFT46ENSG00000118096.3393.01290262.804100.580504.932704.28590HepG2SSB
IFT46ENSG00000118096.3176.87030292.15850-0.724103.385402.45940HepG2UBE2L3
IFT46ENSG00000118096.3250.25270157.497900.668002.562101.59860HepG2UPF2
IFT46ENSG00000118096.3374.05610185.918501.0085010.230409.19450HepG2UTP3
IFT46ENSG00000118096.3256.24630169.266800.598102.046501.41550HepG2XRN2
IFT46ENSG00000118096.3364.91290275.263200.406602.038501.35710K562CPSF6
IFT46ENSG00000118096.3584.83640294.583600.9893015.1260013.71860K562DDX47
IFT46ENSG00000118096.3218.79980127.419900.779902.785301.77740K562EIF3A
IFT46ENSG00000118096.3302.95950209.307500.533402.334201.39330K562EIF3D
IFT46ENSG00000118096.3284.21580191.512400.569402.970102.12120K562EIF4A3
IFT46ENSG00000118096.3594.95700435.408500.450304.131502.98900K562EIF4G2
IFT46ENSG00000118096.3457.12140280.063200.706705.113103.94520K562FMR1
IFT46ENSG00000118096.3751.87110379.872200.9849012.3255010.70860K562GRSF1
IFT46ENSG00000118096.3332.11030217.980600.607403.958902.67590K562HNRNPA1
IFT46ENSG00000118096.3484.23450210.242101.2036013.6667012.42520K562HNRNPC
IFT46ENSG00000118096.3333.62560231.559800.526702.455201.58110K562HNRNPM
IFT46ENSG00000118096.3759.24370381.734000.9919011.8481010.22900K562HSPD1
IFT46ENSG00000118096.3346.46610224.398000.626602.834901.88720K562KRR1
IFT46ENSG00000118096.3310.36130203.648400.607803.535501.91760K562LARP7
IFT46ENSG00000118096.3315.21550213.273300.563502.814501.34890K562LIN28B
IFT46ENSG00000118096.3361.85500259.556400.479303.232802.35970K562MTPAP
IFT46ENSG00000118096.3273.67750191.248700.516902.531101.35900K562NCBP2
IFT46ENSG00000118096.3497.18330316.628400.650904.270403.23620K562PCBP3
IFT46ENSG00000118096.3376.89750242.863000.633903.564002.64850K562POLR2G
IFT46ENSG00000118096.3695.38230475.070600.549604.366203.34710K562PUF60
IFT46ENSG00000118096.3311.46540419.76900-0.430502.099001.61340K562PUS1
IFT46ENSG00000118096.3406.91340193.777801.070208.318206.88880K562RPS19
IFT46ENSG00000118096.3454.20920291.545800.639506.005004.69150K562SRPK2
IFT46ENSG00000118096.3259.90650181.311300.519402.157601.34080K562TIAL1
IFT46ENSG00000118096.3425.97660305.786500.478103.557102.75000K562UPF1
IFT46ENSG00000118096.3365.72280272.087600.426602.868502.00660K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IFT46 is not available on ENCORE database.





11 RBPs can affect the splicing of IFT46 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEIFT46ENSG00000118096.3chr11-118435679118435776118430499118430579118436504118436791-0.164000.002960.07131excludedK562AKAP8L
SEIFT46ENSG00000118096.3chr11-1184284521184286051184276201184277601184304991184305790.161000.000020.01617includedK562ABCF1
SEIFT46ENSG00000118096.3chr11-118428452118428605118427620118427760118430499118430579-0.226000.001920.06463excludedK562FXR1
SEIFT46ENSG00000118096.3chr11-118435679118435776118430499118430579118436504118436791-0.296000.000090.00233excludedK562PUS1
SEIFT46ENSG00000118096.3chr11-118435679118435776118430499118430579118436504118436632-0.204000.001430.02996excludedK562U2AF1
SEIFT46ENSG00000118096.3chr11-118435679118435776118430499118430579118436504118436791-0.184000.002680.07064excludedK562UTP18
SEIFT46ENSG00000118096.3chr11-118435679118435776118430499118430579118436504118436632-0.375000.000010.00034excludedK562U2AF2
SEIFT46ENSG00000118096.3chr11-118435679118435776118430499118430579118436504118436791-0.267000.000260.01332excludedK562TARDBP
SEIFT46ENSG00000118096.3chr11-1184284521184286051184276201184277601184304991184305790.219000.000500.09543includedHepG2EIF3D
SEIFT46ENSG00000118096.3chr11-1184284521184286051184276201184277601184304991184305790.220000.000000.00089includedK562ZC3H8
A3SSIFT46ENSG00000118096.3chr11-1184161231184163151184161231184162091184165071184165680.248000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for IFT46 is not avaliable on ENCORE database.