ZCCHC10

General Information

Gene Name       : ZCCHC10
Gene ID             : ENSG00000155329.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZCCHC10)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZCCHC10ENSG00000155329.1137.7637.1337.45ENCSR000AEF
HepG2ZCCHC10ENSG00000155329.1124.2833.1028.69ENCSR985KAT
K562ZCCHC10ENSG00000155329.1142.1846.9844.58ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZCCHC10Ribo-STAMP-293TshRNAZCCHC10-BGRSLV07-43,ZCCHC10-BGRSLV07-44NT-BGRSLV07-1,NT-BGRSLV07-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZCCHC10 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZCCHC10 RNA is bound by 5 proteins.  







eCLIP assay for ZCCHC10 is not avaliable on ENCORE database.





5 proteins are bound to ZCCHC10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5132332835132332938-3'-UTR,intron-Distal4.592586.49450K562PUM2
chr5132333802132333913-3'-UTR,intron-Distal,intron-Proximal3.470604.46783HepG2FUBP3
chr5132362188132362241-5'-UTR,CDS,intron-Distal,intron-Proximal5.487407.12859K562DDX3X
chr5132362094132362160-intron-Distal3.721163.71036HepG2RBM22
chr5132335290132335344-intron-Distal4.477614.20763HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZCCHC10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZCCHC10 is not available on ENCORE database.

  • 75 RBPs can affect the levels of ZCCHC10.  








The Knockdown/knockout RNA-Seq assay for ZCCHC10 is not available on ENCORE database.





75 RBPs can affect the gene expression of ZCCHC10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZCCHC10ENSG00000155329.7387.39940301.530600.361402.256301.69670HepG2ACO1
ZCCHC10ENSG00000155329.7619.01140462.775700.419602.391801.65740HepG2ASCC1
ZCCHC10ENSG00000155329.7135.77150313.70170-1.208208.180906.74020HepG2BCLAF1
ZCCHC10ENSG00000155329.7245.59690553.20510-1.171505.310104.51480HepG2BOP1
ZCCHC10ENSG00000155329.7273.74550507.89930-0.891703.325702.57920HepG2CPSF6
ZCCHC10ENSG00000155329.7312.83600223.022500.488102.573401.53150HepG2CSTF2
ZCCHC10ENSG00000155329.7405.76910525.83760-0.374003.002902.23530HepG2DAZAP1
ZCCHC10ENSG00000155329.7150.05240268.92130-0.841704.245702.53520HepG2DDX28
ZCCHC10ENSG00000155329.7191.02740354.91470-0.893704.980103.97970HepG2DDX55
ZCCHC10ENSG00000155329.7198.65830408.93950-1.041609.531607.79460HepG2DDX5
ZCCHC10ENSG00000155329.7161.15330288.49590-0.840106.174505.23960HepG2DKC1
ZCCHC10ENSG00000155329.7250.83870322.75460-0.363702.112601.52810HepG2DNAJC2
ZCCHC10ENSG00000155329.7385.68530257.211300.584402.996901.83600HepG2AGO1
ZCCHC10ENSG00000155329.7317.60050442.42840-0.478202.564301.99370HepG2EIF2S1
ZCCHC10ENSG00000155329.7376.63290263.756200.513903.187202.03500HepG2EIF3G
ZCCHC10ENSG00000155329.7657.40780518.787900.341502.611501.79520HepG2EIF4G1
ZCCHC10ENSG00000155329.7404.20360294.693400.455802.736001.90510HepG2EWSR1
ZCCHC10ENSG00000155329.7344.06090485.87510-0.497902.900201.98490HepG2G3BP2
ZCCHC10ENSG00000155329.7215.69400575.81710-1.416606.094005.16960HepG2GPKOW
ZCCHC10ENSG00000155329.7471.03950363.276700.374702.639602.04690HepG2HNRNPU
ZCCHC10ENSG00000155329.7297.54850418.04540-0.490502.055401.42520HepG2IGF2BP1
ZCCHC10ENSG00000155329.7260.80900465.15700-0.834706.276605.29780HepG2IGF2BP2
ZCCHC10ENSG00000155329.7235.06850371.07660-0.658606.161705.10990HepG2ILF2
ZCCHC10ENSG00000155329.7289.90510467.89100-0.690603.863702.66020HepG2KHSRP
ZCCHC10ENSG00000155329.7726.67830496.282400.550103.532302.82760HepG2MATR3
ZCCHC10ENSG00000155329.7218.05880324.01530-0.571303.833202.97840HepG2PPIL4
ZCCHC10ENSG00000155329.7386.21560295.748500.384902.414001.68580HepG2PRPF4
ZCCHC10ENSG00000155329.7435.08260273.868400.667704.454803.45580HepG2PRPF8
ZCCHC10ENSG00000155329.7503.77890369.409500.447502.924701.81800HepG2RPS5
ZCCHC10ENSG00000155329.7528.91320346.022100.612103.118701.49850HepG2RTF1
ZCCHC10ENSG00000155329.7154.08920323.51910-1.0701010.916309.76940HepG2SAFB2
ZCCHC10ENSG00000155329.7952.52340385.534401.304809.568308.25810HepG2SF3A3
ZCCHC10ENSG00000155329.7231.74750543.94510-1.230905.424704.46140HepG2SF3B1
ZCCHC10ENSG00000155329.7341.25530477.27470-0.484004.013603.19240HepG2SLBP
ZCCHC10ENSG00000155329.7303.62590377.28660-0.313401.855001.31070HepG2SMN1
ZCCHC10ENSG00000155329.7360.78600574.98950-0.672407.500706.78650HepG2SRFBP1
ZCCHC10ENSG00000155329.7256.97360499.22690-0.9581012.6541011.71470HepG2SSB
ZCCHC10ENSG00000155329.7184.58530312.84730-0.761203.485602.10570HepG2STAU1
ZCCHC10ENSG00000155329.7359.92710558.91910-0.634906.977806.06850HepG2SUCLG1
ZCCHC10ENSG00000155329.7189.77170316.26370-0.736904.889303.65860HepG2SUPT6H
ZCCHC10ENSG00000155329.7582.90460426.508200.450603.527802.90840HepG2TAF15
ZCCHC10ENSG00000155329.7247.56860535.40300-1.112805.045004.10960HepG2TARDBP
ZCCHC10ENSG00000155329.7239.98930356.14460-0.569504.399503.72120HepG2TRIM56
ZCCHC10ENSG00000155329.7965.67410400.585001.2693019.9103018.17570HepG2U2AF1
ZCCHC10ENSG00000155329.7366.27800514.73500-0.490902.448301.66490HepG2UBE2L3
ZCCHC10ENSG00000155329.7608.88300330.101200.8832012.6038011.46640HepG2UTP3
ZCCHC10ENSG00000155329.7465.41870312.759300.573402.585601.37110HepG2XRCC5
ZCCHC10ENSG00000155329.7516.64400349.782500.562602.895801.81300HepG2XRCC6
ZCCHC10ENSG00000155329.7549.02490404.898200.439202.718201.54810K562AARS
ZCCHC10ENSG00000155329.71430.90350976.536000.551105.938005.13500K562AQR
ZCCHC10ENSG00000155329.7612.05730879.24380-0.522604.197803.11680K562BOP1
ZCCHC10ENSG00000155329.7481.00170934.89980-0.9588014.9334013.08000K562CPSF6
ZCCHC10ENSG00000155329.71501.66510989.534500.6016011.4910010.26270K562DDX47
ZCCHC10ENSG00000155329.7351.00580456.46530-0.379002.582401.42580K562EIF2S1
ZCCHC10ENSG00000155329.7469.05600299.779300.645803.028201.97010K562EIF3A
ZCCHC10ENSG00000155329.7736.04240951.21630-0.370002.574501.75060K562FMR1
ZCCHC10ENSG00000155329.7565.22950451.520800.323902.144201.59940K562FXR1
ZCCHC10ENSG00000155329.7690.62550528.671800.385401.911701.33620K562G3BP2
ZCCHC10ENSG00000155329.7517.59480892.60840-0.786209.485408.00510K562GPKOW
ZCCHC10ENSG00000155329.7362.84990601.61610-0.729505.362903.73800K562IGF2BP2
ZCCHC10ENSG00000155329.7463.80360612.02280-0.400102.739901.55580K562IGF2BP3
ZCCHC10ENSG00000155329.7928.51100675.496800.458902.214801.48600K562KIF1C
ZCCHC10ENSG00000155329.7476.95230762.15230-0.676204.612403.37110K562KRR1
ZCCHC10ENSG00000155329.7635.99340871.28150-0.454103.711302.68670K562METAP2
ZCCHC10ENSG00000155329.7905.635601197.83890-0.403402.956501.78470K562MSI2
ZCCHC10ENSG00000155329.7873.11720530.404700.719005.275403.92010K562NAA15
ZCCHC10ENSG00000155329.7754.12550412.019400.872009.302207.92190K562PRPF8
ZCCHC10ENSG00000155329.71750.003201226.128500.513105.197604.08270K562PUF60
ZCCHC10ENSG00000155329.7990.13310631.280500.649206.236505.46080K562PUS1
ZCCHC10ENSG00000155329.7927.60860615.031700.592807.183806.25880K562RBM15
ZCCHC10ENSG00000155329.7474.71180620.19220-0.385702.332401.34770K562NELFE
ZCCHC10ENSG00000155329.7579.70880403.509700.522603.787802.07700K562SDAD1
ZCCHC10ENSG00000155329.7613.14540848.86910-0.469303.063702.03950K562SF3B1
ZCCHC10ENSG00000155329.7788.54600602.399000.388403.018502.28230K562SRSF1
ZCCHC10ENSG00000155329.7421.82030568.85330-0.431402.845501.77890K562SRSF5
ZCCHC10ENSG00000155329.7738.591901060.50720-0.521904.396402.75090K562STAU1
ZCCHC10ENSG00000155329.7712.03440439.357600.696506.094604.86680K562SYNCRIP
ZCCHC10ENSG00000155329.7357.05990609.72560-0.772007.332906.12050K562TARDBP
ZCCHC10ENSG00000155329.7415.93930588.13380-0.499803.953302.95100K562TIA1
ZCCHC10ENSG00000155329.7440.77030576.99570-0.388502.384201.38550K562TRA2A
ZCCHC10ENSG00000155329.7725.051101033.90440-0.511904.353202.50040K562TRIP6
ZCCHC10ENSG00000155329.7557.54120754.07920-0.435604.627002.98550K562TROVE2
ZCCHC10ENSG00000155329.7291.38830422.25800-0.535202.948901.89090K562UCHL5
ZCCHC10ENSG00000155329.7554.28590758.47640-0.452502.719102.00590K562UPF1
ZCCHC10ENSG00000155329.7849.21890674.828800.331503.016802.13360K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZCCHC10 is not available on ENCORE database.





25 RBPs can affect the splicing of ZCCHC10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.232000.000060.00194includedK562SRSF1
SEZCCHC10ENSG00000155329.7chr5-132335823132335865132334308132334542132342450132342612-0.244000.002870.08088excludedK562PRPF8
SEZCCHC10ENSG00000155329.7chr5-132342450132342612132333903132334542132362188132362241-0.119000.002530.06376excludedK562AKAP8L
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622410.349000.000080.02930includedHepG2ILF3
SEZCCHC10ENSG00000155329.7chr5-1323585021323585981323424501323426121323621881323622370.150000.000080.02866includedK562WDR43
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.330000.000000.00016includedHepG2HNRNPK
SEZCCHC10ENSG00000155329.7chr5-132358532132358598132342450132342612132362188132362281-0.151000.000530.05372excludedHepG2DDX59
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.150000.000330.03213includedHepG2TBRG4
SEZCCHC10ENSG00000155329.7chr5-132358532132358598132342450132342612132362188132362281-0.127000.000050.00117excludedHepG2U2AF2
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.244000.000000.00007includedHepG2SUGP2
SEZCCHC10ENSG00000155329.7chr5-132342450132342612132333903132334542132362188132362263-0.303000.000000.00000excludedK562AQR
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.139000.000500.06926includedK562DROSHA
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.352000.000060.03955includedHepG2FAM120A
SEZCCHC10ENSG00000155329.7chr5-132342450132342612132333903132334542132362188132362241-0.238000.000000.00001excludedK562PUS1
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.235000.000010.00147includedHepG2SFPQ
SEZCCHC10ENSG00000155329.7chr5-1323358231323358651323337911323345421323424501323426120.139000.000500.08343includedK562APOBEC3C
SEZCCHC10ENSG00000155329.7chr5-132342450132342612132333903132334542132362188132362241-0.174000.000300.00845excludedK562U2AF1
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.231000.000000.00064includedHepG2PPIG
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.292000.000080.00296includedHepG2SRSF1
SEZCCHC10ENSG00000155329.7chr5-132335823132335893132334099132334542132342450132342612-0.267000.000220.00911excludedHepG2SF3A3
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.311000.000590.04600includedHepG2IGF2BP3
SEZCCHC10ENSG00000155329.7chr5-132342450132342612132333903132334542132362188132362241-0.147000.000560.02198excludedK562UTP18
SEZCCHC10ENSG00000155329.7chr5-132342450132342612132333903132334542132362188132362263-0.142000.000730.01530excludedK562U2AF2
SEZCCHC10ENSG00000155329.7chr5-132335823132335865132334308132334542132342450132342612-0.358000.000100.00451excludedK562RBM15
SEZCCHC10ENSG00000155329.7chr5-132358532132358598132342450132342612132362188132362281-0.134000.000000.00029excludedK562RBM15
SEZCCHC10ENSG00000155329.7chr5-132342450132342612132333903132334542132362188132362241-0.155000.000440.01437excludedK562AGGF1
SEZCCHC10ENSG00000155329.7chr5-1323585321323585981323424501323426121323621881323622810.332000.000010.00772includedHepG2EIF3D
A3SSZCCHC10ENSG00000155329.7chr5-1323424501323426741323424501323426121323621881323622410.084000.001130.00776longerK562AQR
MXEZCCHC10ENSG00000155329.7chr5-1323424501323426121323585321323585981323358231323358651323621881323622410.212000.002750.056791includedHepG2HNRNPK
MXEZCCHC10ENSG00000155329.7chr5-1323358231323358651323585321323585981323337911323345421323621881323622370.270000.000040.007771includedHepG2ILF3
MXEZCCHC10ENSG00000155329.7chr5-132342450132342612132358532132358598132335823132335865132362188132362241-0.190000.000630.070152includedHepG2XRCC6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZCCHC10 is not avaliable on ENCORE database.