SNX25

General Information

Gene Name       : SNX25
Gene ID             : ENSG00000109762.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX25)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX25ENSG00000109762.1573.0763.2768.17ENCSR000AEF
HepG2SNX25ENSG00000109762.157.1412.089.61ENCSR985KAT
K562SNX25ENSG00000109762.157.538.978.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX25 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX25 RNA is bound by 13 proteins.  







eCLIP assay for SNX25 is not avaliable on ENCORE database.





13 proteins are bound to SNX25 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4186278812186278869+3'-UTR,CDS,intron-Proximal3.484863.16095HepG2U2AF2
chr4186283250186283304+3'-UTR,CDS,intron-Proximal5.080487.92973HepG2PRPF8
chr4186267674186267724+3'-UTR,CDS,intron-Proximal4.296324.12401HepG2U2AF2
chr4186263181186263241+5'-UTR,CDS3.457786.60490HepG2BCLAF1
chr4186260635186260661+5'-UTR,CDS4.159556.84316HepG2BCLAF1
chr4186185696186185766+CDS,intron-Distal,intron-Proximal4.212097.65975HepG2BCLAF1
chr4186244657186244708+CDS,intron-Proximal3.727574.77518HepG2U2AF2
chr4186253750186253851+CDS4.2246216.23904HepG2BCLAF1
chr4186241986186242017+CDS4.220395.79432HepG2BCLAF1
chr4186253750186253871+CDS,intron-Proximal5.5027910.23443HepG2FXR2
chr4186231899186231963+CDS3.997797.89209HepG2BCLAF1
chr4186244818186244918+CDS4.0615514.48007HepG2BCLAF1
chr4186231865186231969+CDS3.757494.48684HepG2ZNF800
chr4186231802186231978+CDS,intron-Proximal4.833625.59615K562ZNF622
chr4186134653186134699+intron-Distal4.871633.97018HepG2HNRNPM
chr4186256438186256522+intron-Distal3.470163.76460HepG2HNRNPL
chr4186134646186134819+intron-Distal3.968493.04182K562HNRNPM
chr4186241604186241707+intron-Distal3.820384.01234HepG2HNRNPL
chr4186267024186267072+intron-Distal3.665645.11169HepG2ILF3
chr4186131711186131784+intron-Distal3.921663.31905K562NONO
chr4186160089186160161+intron-Distal3.508643.39857HepG2HNRNPM
chr4186130797186130948+intron-Distal4.2827320.14607HepG2DDX3X
chr4186143259186143386+intron-Distal3.701338.43681HepG2HNRNPL
chr4186223977186224103+intron-Distal4.010553.65412HepG2HNRNPK
chr4186143424186143498+intron-Distal3.200503.02891HepG2HNRNPL
chr4186219820186219932+intron-Distal3.903425.81617HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX25 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX25 is not available on ENCORE database.

  • 109 RBPs can affect the levels of SNX25.  








The Knockdown/knockout RNA-Seq assay for SNX25 is not available on ENCORE database.





109 RBPs can affect the gene expression of SNX25 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX25ENSG00000109762.11551.45920971.40420-0.816807.858306.38450HepG2ABCF1
SNX25ENSG00000109762.11471.48930634.84160-0.429202.739701.74610HepG2ADAR
SNX25ENSG00000109762.11735.726901384.77920-0.9124010.103509.15270HepG2AKAP1
SNX25ENSG00000109762.11868.341801155.29010-0.411902.707101.68060HepG2AKAP8
SNX25ENSG00000109762.11632.51460787.55530-0.316302.729301.96740HepG2AKAP8L
SNX25ENSG00000109762.11950.44840753.821800.334302.632401.87940HepG2CALR
SNX25ENSG00000109762.11690.592801133.06150-0.714304.778603.48270HepG2CCAR1
SNX25ENSG00000109762.11783.052201088.59020-0.475303.697302.81250HepG2CIRBP
SNX25ENSG00000109762.11520.70370783.71440-0.589908.676907.62700HepG2CKAP4
SNX25ENSG00000109762.11784.748701066.08650-0.442002.059001.40470HepG2CNOT7
SNX25ENSG00000109762.11751.47050534.980300.490103.614102.83910HepG2CPSF6
SNX25ENSG00000109762.11219.77070326.82410-0.572502.491801.46730HepG2CSTF2
SNX25ENSG00000109762.11542.12210724.94800-0.419304.826703.76550HepG2DDX19B
SNX25ENSG00000109762.11428.89720622.55960-0.537604.250603.42780HepG2DDX21
SNX25ENSG00000109762.11714.951501326.55570-0.8918011.077109.90290HepG2DDX3X
SNX25ENSG00000109762.11880.54630607.514400.535402.345101.44560HepG2DDX59
SNX25ENSG00000109762.11790.81400616.556300.359002.479201.54950HepG2DHX30
SNX25ENSG00000109762.11422.37750749.91560-0.8282012.6896011.45400HepG2DKC1
SNX25ENSG00000109762.11801.28470639.244600.325802.677201.98180HepG2DNAJC21
SNX25ENSG00000109762.11476.80120633.62300-0.410204.142003.37540HepG2DNAJC2
SNX25ENSG00000109762.11354.89510755.82670-1.0907010.010908.39580HepG2EEF2
SNX25ENSG00000109762.11450.64660630.16960-0.483703.145801.96450HepG2EFTUD2
SNX25ENSG00000109762.11366.78390613.60810-0.742405.616704.35900HepG2EIF3D
SNX25ENSG00000109762.11429.19810587.84040-0.453803.432402.24650HepG2EIF3G
SNX25ENSG00000109762.11277.296401210.66980-2.1263043.7749041.31660HepG2EIF4A3
SNX25ENSG00000109762.111218.39280933.475700.384203.232602.35600HepG2EIF4G2
SNX25ENSG00000109762.11641.34750841.42630-0.391702.785101.68830HepG2ESF1
SNX25ENSG00000109762.11606.74910765.98910-0.336202.304501.54310HepG2EWSR1
SNX25ENSG00000109762.111016.97730755.762600.428203.901202.97710HepG2FUBP3
SNX25ENSG00000109762.11710.177501221.37160-0.782308.836507.66250HepG2FXR1
SNX25ENSG00000109762.11633.123901133.07670-0.839709.218008.04020HepG2G3BP1
SNX25ENSG00000109762.11923.606801202.80750-0.381102.661001.78940HepG2G3BP2
SNX25ENSG00000109762.11262.61140546.35220-1.0569010.946309.24460HepG2GEMIN5
SNX25ENSG00000109762.11425.33160606.40060-0.511703.110802.43700HepG2GPKOW
SNX25ENSG00000109762.11502.22840986.87470-0.974508.635706.68870HepG2GRSF1
SNX25ENSG00000109762.11951.37460748.360700.346203.720302.59970HepG2HDGF
SNX25ENSG00000109762.11240.82330645.36900-1.4221020.9102019.42230HepG2HNRNPA1
SNX25ENSG00000109762.11521.15460880.26000-0.756206.259904.08500HepG2HNRNPAB
SNX25ENSG00000109762.11226.72650717.86140-1.6628028.0454026.11880HepG2HNRNPC
SNX25ENSG00000109762.11753.21400620.117100.280402.092201.46210HepG2HNRNPF
SNX25ENSG00000109762.11776.667201147.16650-0.562705.344904.39730HepG2HNRNPK
SNX25ENSG00000109762.11697.06630899.57230-0.367902.180701.57200HepG2HNRNPL
SNX25ENSG00000109762.11478.85280676.70530-0.498904.141402.99760HepG2HNRNPM
SNX25ENSG00000109762.11507.45840713.11470-0.490805.505104.67220HepG2HNRNPU
SNX25ENSG00000109762.11666.373901080.78260-0.697702.584101.63490HepG2IGF2BP3
SNX25ENSG00000109762.11609.37030728.42180-0.257502.312601.63530HepG2ILF2
SNX25ENSG00000109762.11670.241201015.77020-0.599804.476802.90720HepG2KHDRBS1
SNX25ENSG00000109762.11695.265001195.77620-0.782306.091804.85210HepG2LARP4
SNX25ENSG00000109762.11455.98090626.91590-0.459302.880701.64090HepG2LIN28B
SNX25ENSG00000109762.11562.820001221.79730-1.1183016.1793014.65500HepG2MAGOH
SNX25ENSG00000109762.11669.831001228.65890-0.875209.484408.37470HepG2MATR3
SNX25ENSG00000109762.11451.20680642.22830-0.509302.284301.32680HepG2METAP2
SNX25ENSG00000109762.11352.992501257.61970-1.8330037.0002034.89280HepG2NCBP2
SNX25ENSG00000109762.11810.632601120.07960-0.466503.459102.65740HepG2PABPC4
SNX25ENSG00000109762.11573.86450705.85180-0.298702.307701.52800HepG2PARN
SNX25ENSG00000109762.11599.457001114.76110-0.8950019.7456018.36270HepG2PCBP1
SNX25ENSG00000109762.11384.96000507.43040-0.398502.548301.37310HepG2PKM
SNX25ENSG00000109762.11489.76570823.02200-0.748803.646102.25840HepG2PRPF6
SNX25ENSG00000109762.11692.793901134.34110-0.7114012.6843011.68190HepG2PTBP1
SNX25ENSG00000109762.11537.63880934.89550-0.798209.851808.82180HepG2PUF60
SNX25ENSG00000109762.11833.73560992.49530-0.251501.879701.37090HepG2PUM1
SNX25ENSG00000109762.11574.19780798.37530-0.475505.860105.02370HepG2PUS1
SNX25ENSG00000109762.11934.173801228.45550-0.395104.037403.30250HepG2QKI
SNX25ENSG00000109762.111142.58650755.639400.596403.050702.31280HepG2RAVER1
SNX25ENSG00000109762.11644.46200933.83870-0.535106.409105.69910HepG2RBM22
SNX25ENSG00000109762.11862.368701114.92650-0.370603.050302.34630HepG2RBM25
SNX25ENSG00000109762.11434.09660719.82840-0.729606.328704.82130HepG2RBM27
SNX25ENSG00000109762.11238.67020584.53120-1.2923012.8521010.64240HepG2RCC2
SNX25ENSG00000109762.11652.797501262.38780-0.9514021.8463020.60740HepG2NELFE
SNX25ENSG00000109762.11712.869401175.78790-0.7219013.4313012.22850HepG2RECQL
SNX25ENSG00000109762.11216.58560597.02580-1.4629018.1743016.80290HepG2RPS19
SNX25ENSG00000109762.11364.91470663.89640-0.863408.322306.98390HepG2RPS2
SNX25ENSG00000109762.11608.871501070.45490-0.814007.010905.74830HepG2RPS3A
SNX25ENSG00000109762.11455.45130677.66850-0.573304.010002.70260HepG2RPS5
SNX25ENSG00000109762.11776.44020635.055600.289902.544501.92250HepG2SAFB2
SNX25ENSG00000109762.11698.496301180.94170-0.7576014.4317013.24480HepG2SF3B4
SNX25ENSG00000109762.11565.43770740.57450-0.389304.238303.47240HepG2SMN1
SNX25ENSG00000109762.11394.232901232.66940-1.6447056.8377055.30900HepG2SRSF1
SNX25ENSG00000109762.11768.61420923.14800-0.264301.949701.41290HepG2SRSF5
SNX25ENSG00000109762.111285.539601002.861100.358204.799104.10950HepG2SRSF9
SNX25ENSG00000109762.11454.71100915.78890-1.0101021.8294020.68880HepG2SSB
SNX25ENSG00000109762.11993.76730706.115900.492902.516701.37100HepG2SUB1
SNX25ENSG00000109762.11835.448801049.80950-0.329503.010102.36630HepG2SUCLG1
SNX25ENSG00000109762.11839.91210662.259200.342702.537901.63640HepG2SUPT6H
SNX25ENSG00000109762.11714.800201108.03220-0.632409.524708.58590HepG2TAF15
SNX25ENSG00000109762.11488.804501231.02200-1.332509.378507.55290HepG2TBRG4
SNX25ENSG00000109762.11358.21280692.89520-0.9518013.5796012.61420HepG2TIAL1
SNX25ENSG00000109762.11430.64230758.46080-0.816604.243602.44720HepG2TRA2A
SNX25ENSG00000109762.11317.23840487.61240-0.620203.725201.91640HepG2TROVE2
SNX25ENSG00000109762.11655.90520913.45530-0.477804.064902.98190HepG2TUFM
SNX25ENSG00000109762.11575.81560839.02200-0.543104.578003.77990HepG2U2AF1
SNX25ENSG00000109762.11556.176001093.10680-0.974802.245201.36670HepG2U2AF2
SNX25ENSG00000109762.11632.57440879.49160-0.475405.536004.10010HepG2UTP18
SNX25ENSG00000109762.11638.57520826.10990-0.371503.711103.03300HepG2UTP3
SNX25ENSG00000109762.11505.11830830.83510-0.717903.275002.11940HepG2XRCC6
SNX25ENSG00000109762.11263.59740509.65420-0.951205.759704.72550HepG2XRN2
SNX25ENSG00000109762.111469.48350941.067100.6428016.2105015.16100HepG2ZNF622
SNX25ENSG00000109762.11496.65980605.77370-0.286501.963201.46980K562AGGF1
SNX25ENSG00000109762.11446.20730630.32280-0.498403.856503.08330K562AKAP8L
SNX25ENSG00000109762.11326.65520603.11580-0.884707.961607.05240K562AQR
SNX25ENSG00000109762.11118.41000180.64340-0.609402.514601.51870K562CCAR1
SNX25ENSG00000109762.11522.43640406.489400.361902.453501.76880K562EIF2S2
SNX25ENSG00000109762.11626.71810786.22390-0.327102.587501.67580K562EIF4G2
SNX25ENSG00000109762.11272.79740413.30560-0.599404.637003.16930K562GLRX3
SNX25ENSG00000109762.11424.11200541.65910-0.352902.093301.42960K562GRSF1
SNX25ENSG00000109762.1198.98390302.70200-1.6126015.2301013.91190K562HNRNPC
SNX25ENSG00000109762.11362.24050520.54030-0.523103.912102.62770K562HNRNPL
SNX25ENSG00000109762.11824.46070561.061200.555204.762203.72530K562HSPD1
SNX25ENSG00000109762.11597.44050838.03600-0.488203.578902.29270K562MSI2
SNX25ENSG00000109762.11284.69300434.54430-0.610105.321004.22470K562MTPAP
SNX25ENSG00000109762.11383.73360482.77670-0.331302.238901.56080K562NSUN2
SNX25ENSG00000109762.11619.53740807.86940-0.382903.044401.54050K562PNPT1
SNX25ENSG00000109762.11480.72990609.08550-0.341402.402401.84300K562RBM15
SNX25ENSG00000109762.11338.27890451.60310-0.416802.425401.64090K562RBM22
SNX25ENSG00000109762.11145.87930247.61540-0.763304.100702.89120K562RCC2
SNX25ENSG00000109762.11347.81780461.62470-0.408402.383801.71950K562SRSF1
SNX25ENSG00000109762.11354.16470467.22390-0.399702.149801.52130K562TARDBP
SNX25ENSG00000109762.11146.06490240.00470-0.716503.538501.63430K562TFIP11
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX25 is not available on ENCORE database.





19 RBPs can affect the splicing of SNX25 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.189000.001360.09390includedHepG2G3BP1
SESNX25ENSG00000109762.11chr4+1862399241862400931862317881862319701862418861862420180.075000.000110.01588includedHepG2G3BP1
SESNX25ENSG00000109762.11chr4+1862039571862040561861881221861883091862091651862092360.099000.003460.05655includedK562SRSF1
SESNX25ENSG00000109762.11chr4+186241886186242018186231763186231970186244681186244954-0.165000.001070.06303excludedHepG2RBM22
SESNX25ENSG00000109762.11chr4+186274638186274756186267690186267804186278824186278891-0.153000.002190.03927excludedHepG2U2AF1
SESNX25ENSG00000109762.11chr4+1862399241862400931862317881862319701862418861862420180.060000.000860.02372includedHepG2HNRNPK
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.268000.000310.03112includedHepG2TBRG4
SESNX25ENSG00000109762.11chr4+1862786281862787381862742111862747561862788241862788910.066000.000510.04402includedHepG2TBRG4
SESNX25ENSG00000109762.11chr4+186272598186272763186267690186267804186274638186274756-0.302000.000110.00215excludedHepG2U2AF2
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.216000.001000.05799includedHepG2AKAP1
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.199000.000540.07188includedK562DROSHA
SESNX25ENSG00000109762.11chr4+1862746381862747561862676901862678041862788241862788910.193000.000090.00764includedHepG2SFPQ
SESNX25ENSG00000109762.11chr4+1862039571862040561861881221861883091862091651862092360.104000.000000.00000includedHepG2SFPQ
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.270000.000020.00208includedHepG2MATR3
SESNX25ENSG00000109762.11chr4+1862399241862400931862317881862319701862418861862420180.057000.001430.05500includedHepG2MATR3
SESNX25ENSG00000109762.11chr4+1862039571862040561861881221861883091862091651862092360.085000.000110.00756includedHepG2MATR3
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.196000.000100.01765includedHepG2LARP4
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.258000.000130.00479includedHepG2SRSF1
SESNX25ENSG00000109762.11chr4+1862039571862040561861881221861883091862091651862092360.094000.000040.00185includedHepG2SRSF1
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.299000.000030.00444includedHepG2IGF2BP3
SESNX25ENSG00000109762.11chr4+1862399241862400931862317881862319701862418861862420180.127000.000010.00203includedHepG2IGF2BP3
SESNX25ENSG00000109762.11chr4+1862725981862727631862676901862678041862746381862747560.204000.001020.08374includedHepG2SUPV3L1
SESNX25ENSG00000109762.11chr4+1862400601862400931862317881862319701862418861862420180.100000.002620.09846includedHepG2PCBP1
SESNX25ENSG00000109762.11chr4+186272598186272763186267690186267804186274638186274756-0.483000.000040.00127excludedK562U2AF2
SESNX25ENSG00000109762.11chr4+1862399241862400931862317631862319701862418861862420180.185000.000540.09966includedHepG2EIF3D
A5SSSNX25ENSG00000109762.11chr4+186253748186253913186253748186253867186260532186260664-0.118000.000840.08526shorterHepG2TAF15
A5SSSNX25ENSG00000109762.11chr4+186253748186253913186253748186253867186260532186260664-0.144000.000840.06966shorterK562UTP18
MXESNX25ENSG00000109762.11chr4+1862537481862539131862605321862606641862446811862449541862631291862632700.086000.000680.005831includedHepG2U2AF2
MXESNX25ENSG00000109762.11chr4+186272598186272763186274638186274756186267690186267804186278824186278891-0.203000.001340.096582includedK562FMR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX25 is not avaliable on ENCORE database.