GNPNAT1

General Information

Gene Name       : GNPNAT1
Gene ID             : ENSG00000100522.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GNPNAT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GNPNAT1ENSG00000100522.922.3720.9021.63ENCSR000AEF
HepG2GNPNAT1ENSG00000100522.927.1360.4343.78ENCSR985KAT
K562GNPNAT1ENSG00000100522.916.2217.4216.82ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GNPNAT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GNPNAT1 RNA is bound by 16 proteins.  







eCLIP assay for GNPNAT1 is not avaliable on ENCORE database.





16 proteins are bound to GNPNAT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr145324302453243099-3'-UTR,intron-Distal5.4778510.11393K562LIN28B
chr145324314953243206-3'-UTR,intron-Distal,intron-Proximal4.189086.42251K562FAM120A
chr145324470553244797-3'-UTR,intron-Distal3.936745.35418HepG2FUBP3
chr145324305153243122-3'-UTR,intron-Distal4.7963410.32038HepG2LIN28B
chr145324289253242967-3'-UTR,intron-Distal5.0368812.37152K562FAM120A
chr145324255653242612-3'-UTR,intron-Distal,intron-Proximal5.023865.00858K562AKAP1
chr145324247253242536-3'-UTR,intron-Distal,intron-Proximal5.7529211.27805HepG2UPF1
chr145324262253242718-3'-UTR,intron-Distal4.0467415.06999HepG2UPF1
chr145324335853243449-3'-UTR,intron-Distal4.5732410.95291HepG2UPF1
chr145324236053242430-3'-UTR,intron-Distal4.010248.29113HepG2UPF1
chr145325014453250199-3'-UTR,CDS,intron-Distal3.453403.01092HepG2LIN28B
chr145324502253245084-3'-UTR,CDS,intron-Distal,intron-Proximal3.924594.76554HepG2BCLAF1
chr145324354053243587-3'-UTR,intron-Distal4.360403.87930K562UPF1
chr145324257253242611-3'-UTR,intron-Distal,intron-Proximal3.706344.50550K562UPF1
chr145324283253242899-3'-UTR,intron-Distal3.9291511.91585K562UPF1
chr145324268253242722-3'-UTR,intron-Distal3.804665.15345K562UPF1
chr145325014953250199-3'-UTR,CDS,intron-Distal4.270944.13050K562LIN28B
chr145324238353242429-3'-UTR,intron-Distal3.141694.14964K562UPF1
chr145324284953242893-3'-UTR,intron-Distal3.922456.10933HepG2UPF1
chr145324283553242884-3'-UTR,intron-Distal4.074696.61024K562FAM120A
chr145324254753242611-3'-UTR,intron-Distal,intron-Proximal3.238227.37802HepG2UPF1
chr145324353253243593-3'-UTR,intron-Distal6.4410118.72324HepG2UPF1
chr145324237253242436-3'-UTR,intron-Distal3.390104.51787HepG2AKAP1
chr145324248753242535-3'-UTR,intron-Distal,intron-Proximal4.197074.13758HepG2AKAP1
chr145325824253258337-5'-UTR,intron-Distal,intron-Proximal3.492724.69091K562DDX3X
chr145325811153258205-5'-UTR,intron-Distal3.726164.09778HepG2NCBP2
chr145325822453258336-5'-UTR,intron-Distal,intron-Proximal5.9817218.21641HepG2DDX3X
chr145325814453258242-5'-UTR,intron-Distal,intron-Proximal3.8344111.03053K562DDX3X
chr145325816453258262-5'-UTR,intron-Distal,intron-Proximal4.749664.23238K562FTO
chr145325814453258203-5'-UTR,intron-Distal3.830114.25624HepG2DDX3X
chr145325809053258173-5'-UTR,intron-Distal3.226135.50267HepG2PRPF8
chr145324738253247458-CDS,intron-Distal,intron-Proximal3.248686.86395HepG2BCLAF1
chr145324737353247473-CDS,intron-Distal,intron-Proximal3.235954.63153HepG2AQR
chr145325511553255325-intron-Distal3.033034.59379HepG2HNRNPL
chr145325793853258124-intron-Distal4.555396.26277HepG2FUS
chr145324683153246895-intron-Distal4.001763.60940HepG2HNRNPC
chr145325659453256658-intron-Distal4.219554.24308HepG2TIAL1
chr145325794753258070-intron-Distal4.4818113.00591HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GNPNAT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GNPNAT1 is not available on ENCORE database.

  • 119 RBPs can affect the levels of GNPNAT1.  








The Knockdown/knockout RNA-Seq assay for GNPNAT1 is not available on ENCORE database.





119 RBPs can affect the gene expression of GNPNAT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GNPNAT1ENSG00000100522.41140.659201432.66210-0.328802.632801.58400HepG2AATF
GNPNAT1ENSG00000100522.41351.858202191.45370-0.6969020.9425019.61930HepG2ACO1
GNPNAT1ENSG00000100522.41923.368504139.80880-1.1059015.1630014.01900HepG2AKAP1
GNPNAT1ENSG00000100522.41136.664101853.86760-0.705707.403105.75790HepG2AKAP8
GNPNAT1ENSG00000100522.41571.414402201.87640-0.486709.700008.36940HepG2AKAP8L
GNPNAT1ENSG00000100522.42670.347403425.45230-0.359302.871402.07220HepG2ASCC1
GNPNAT1ENSG00000100522.42849.994401897.187200.587007.309406.13630HepG2CALR
GNPNAT1ENSG00000100522.41290.901002516.92820-0.963304.716903.42920HepG2CCAR1
GNPNAT1ENSG00000100522.41003.797501644.37610-0.712104.910803.88700HepG2CNOT7
GNPNAT1ENSG00000100522.42059.787901441.726800.514605.514404.57430HepG2CPSF6
GNPNAT1ENSG00000100522.41491.231401902.26110-0.351203.116101.94340HepG2CPSF7
GNPNAT1ENSG00000100522.42129.863402625.47850-0.301804.108903.35560HepG2CELF1
GNPNAT1ENSG00000100522.43324.639602823.128500.235803.992703.12810HepG2DAZAP1
GNPNAT1ENSG00000100522.42415.597801546.842900.6430010.850209.08820HepG2DDX24
GNPNAT1ENSG00000100522.41716.225801366.575500.328602.830301.42380HepG2DDX28
GNPNAT1ENSG00000100522.42028.240901563.106100.375703.496202.04270HepG2DDX47
GNPNAT1ENSG00000100522.43491.328002022.849600.7873013.0607011.06790HepG2DDX5
GNPNAT1ENSG00000100522.41334.799303406.20570-1.3515022.3836020.85400HepG2DDX6
GNPNAT1ENSG00000100522.41098.522501671.05860-0.605206.538305.59460HepG2DNAJC2
GNPNAT1ENSG00000100522.41285.312701752.21510-0.447104.963203.42140HepG2EIF2S2
GNPNAT1ENSG00000100522.41268.927003523.62350-1.4735024.1071022.23500HepG2EIF4B
GNPNAT1ENSG00000100522.43758.936102785.108100.432509.275907.91510HepG2EIF4G1
GNPNAT1ENSG00000100522.43698.387902667.969900.471104.233603.23970HepG2EIF4G2
GNPNAT1ENSG00000100522.42485.999802000.853100.313102.728201.64410HepG2ESF1
GNPNAT1ENSG00000100522.42560.850103710.66850-0.5351012.7805011.64470HepG2ETF1
GNPNAT1ENSG00000100522.4952.709101222.48110-0.359703.354402.05300HepG2FAM120A
GNPNAT1ENSG00000100522.42515.096001506.468300.7393013.0093010.84810HepG2FASTKD2
GNPNAT1ENSG00000100522.4923.591102332.17630-1.3364023.2478021.41830HepG2FIP1L1
GNPNAT1ENSG00000100522.42349.819801874.243200.326102.774701.98770HepG2FUBP3
GNPNAT1ENSG00000100522.41542.816702119.76520-0.458302.815301.69170HepG2FUS
GNPNAT1ENSG00000100522.41403.459703651.16420-1.3794023.9150022.10520HepG2FXR1
GNPNAT1ENSG00000100522.41616.241403387.40770-1.0675015.7141014.18780HepG2G3BP1
GNPNAT1ENSG00000100522.4865.353401218.02750-0.493204.299503.17130HepG2GEMIN5
GNPNAT1ENSG00000100522.4835.883501522.02090-0.864606.879905.13360HepG2GRSF1
GNPNAT1ENSG00000100522.41131.408601893.48240-0.742908.080206.94210HepG2HNRNPC
GNPNAT1ENSG00000100522.41975.736601713.357500.205502.178101.53650HepG2HNRNPF
GNPNAT1ENSG00000100522.42087.123303429.08250-0.7163010.306909.03590HepG2HNRNPK
GNPNAT1ENSG00000100522.42023.313702571.68260-0.346007.498206.43650HepG2HNRNPL
GNPNAT1ENSG00000100522.4908.577501609.25450-0.8247014.4696012.58110HepG2HNRNPM
GNPNAT1ENSG00000100522.41271.637501880.97050-0.564805.676304.83220HepG2HNRNPU
GNPNAT1ENSG00000100522.42011.712501687.169800.253702.210501.55880HepG2IGF2BP1
GNPNAT1ENSG00000100522.42452.966003443.37440-0.489304.719803.85820HepG2IGF2BP2
GNPNAT1ENSG00000100522.41711.342303463.16850-1.0170013.3167011.02710HepG2KHSRP
GNPNAT1ENSG00000100522.41521.123902003.35820-0.397308.148906.46940HepG2KIF1C
GNPNAT1ENSG00000100522.41787.947002655.82950-0.570902.472901.68940HepG2LARP4
GNPNAT1ENSG00000100522.42517.721101768.351800.509603.371501.48930HepG2LSM11
GNPNAT1ENSG00000100522.42393.559003652.43540-0.609707.057906.02570HepG2MAGOH
GNPNAT1ENSG00000100522.42052.408003673.00670-0.839609.672308.55160HepG2MATR3
GNPNAT1ENSG00000100522.41000.037401431.76270-0.517702.578001.56010HepG2METAP2
GNPNAT1ENSG00000100522.41334.803001887.75390-0.500006.036204.88310HepG2MSI2
GNPNAT1ENSG00000100522.41179.730501585.09590-0.426104.175402.68390HepG2NAA15
GNPNAT1ENSG00000100522.41640.289603759.63150-1.1966018.8264017.26740HepG2NCBP2
GNPNAT1ENSG00000100522.4930.282102799.40330-1.5894069.0250065.78230HepG2NOL12
GNPNAT1ENSG00000100522.42131.661401382.926600.624208.047306.81890HepG2NSUN2
GNPNAT1ENSG00000100522.41155.096801861.95100-0.688807.277706.00880HepG2PARN
GNPNAT1ENSG00000100522.42521.942003145.19290-0.318605.521704.71140HepG2PCBP1
GNPNAT1ENSG00000100522.42375.997701691.632500.490003.410801.55020HepG2PHF6
GNPNAT1ENSG00000100522.41336.551601960.58340-0.552804.581102.24470HepG2PPIG
GNPNAT1ENSG00000100522.41207.592701677.69100-0.474304.051703.17690HepG2PPIL4
GNPNAT1ENSG00000100522.41518.827502109.60640-0.474002.722901.51290HepG2PRPF6
GNPNAT1ENSG00000100522.41584.271603200.26640-1.0144042.1888040.59040HepG2PTBP1
GNPNAT1ENSG00000100522.42323.372302836.67960-0.288005.881205.08260HepG2PUM1
GNPNAT1ENSG00000100522.42162.194002834.62670-0.390705.288204.37540HepG2PUM2
GNPNAT1ENSG00000100522.41309.003502232.16010-0.7700025.2477023.73250HepG2PUS1
GNPNAT1ENSG00000100522.42378.698303466.14860-0.5432010.891409.77050HepG2QKI
GNPNAT1ENSG00000100522.42030.246402615.14360-0.365204.385503.33600HepG2RBM15
GNPNAT1ENSG00000100522.41595.003903101.46810-0.9594022.6907021.49600HepG2RBM22
GNPNAT1ENSG00000100522.42148.185903561.65990-0.7294024.5204023.22850HepG2NELFE
GNPNAT1ENSG00000100522.42389.777303317.07410-0.4730011.2626010.14830HepG2RECQL
GNPNAT1ENSG00000100522.4656.795601331.03180-1.0190018.2384016.86430HepG2RPS19
GNPNAT1ENSG00000100522.42674.769001650.210600.696706.234805.04030HepG2RPS3A
GNPNAT1ENSG00000100522.41209.991702530.08290-1.064203.603302.01560HepG2SF1
GNPNAT1ENSG00000100522.41895.059802798.69600-0.562503.932603.12260HepG2SF3A3
GNPNAT1ENSG00000100522.42885.222303332.04270-0.207702.738302.14940HepG2SF3B4
GNPNAT1ENSG00000100522.41061.661902452.53910-1.208004.099702.27450HepG2SFPQ
GNPNAT1ENSG00000100522.42987.414502562.207000.221403.411602.64650HepG2SLBP
GNPNAT1ENSG00000100522.41266.147301953.58580-0.625706.426605.51160HepG2SMN1
GNPNAT1ENSG00000100522.4774.412701973.87810-1.3499019.4476016.93130HepG2SMNDC1
GNPNAT1ENSG00000100522.41842.561202638.41980-0.5180011.9150010.74220HepG2SRSF5
GNPNAT1ENSG00000100522.42255.472601683.311200.422007.839006.76520HepG2SRSF7
GNPNAT1ENSG00000100522.41796.127802829.37820-0.6556020.5456019.29680HepG2SRSF9
GNPNAT1ENSG00000100522.43484.170803041.594300.195902.713202.20380HepG2SSB
GNPNAT1ENSG00000100522.41078.029501435.16200-0.412802.516501.47460HepG2STIP1
GNPNAT1ENSG00000100522.41858.640003000.64180-0.6910025.1829023.61540HepG2SUCLG1
GNPNAT1ENSG00000100522.41269.819801575.00550-0.310702.481401.58800HepG2SUPT6H
GNPNAT1ENSG00000100522.42669.547803125.87180-0.227702.581802.03880HepG2TAF15
GNPNAT1ENSG00000100522.42294.713102872.43340-0.324003.526802.58720HepG2TIA1
GNPNAT1ENSG00000100522.41060.640801828.05090-0.785407.546306.79510HepG2TIAL1
GNPNAT1ENSG00000100522.41219.722901844.03100-0.596306.218805.43470HepG2TRIM56
GNPNAT1ENSG00000100522.42931.835501995.163600.555206.989506.00050HepG2U2AF1
GNPNAT1ENSG00000100522.41509.049602630.73120-0.801802.225001.35100HepG2U2AF2
GNPNAT1ENSG00000100522.4699.927301060.73300-0.599804.056603.13740HepG2UCHL5
GNPNAT1ENSG00000100522.41774.242402482.01950-0.4843011.124509.89510HepG2UPF1
GNPNAT1ENSG00000100522.41002.418902396.28610-1.2573057.0874054.90830HepG2UTP3
GNPNAT1ENSG00000100522.42465.540801608.627800.6160019.0236017.54380HepG2ZC3H8
GNPNAT1ENSG00000100522.4671.828002729.74060-2.02260151.70000149.43150HepG2ZNF622
GNPNAT1ENSG00000100522.4935.504601552.86140-0.731109.221808.25170K562AQR
GNPNAT1ENSG00000100522.4766.36300961.72390-0.327603.124102.10820K562BCLAF1
GNPNAT1ENSG00000100522.4476.40150676.10090-0.505103.567902.57760K562BOP1
GNPNAT1ENSG00000100522.4845.451001354.65280-0.680104.008202.68800K562CNOT7
GNPNAT1ENSG00000100522.4492.40060718.86820-0.545904.829503.79780K562CPSF6
GNPNAT1ENSG00000100522.4632.24270843.37370-0.415704.386002.70220K562DDX27
GNPNAT1ENSG00000100522.41602.518401375.095500.220702.239501.64320K562DDX47
GNPNAT1ENSG00000100522.41360.060801010.801400.428104.752203.55270K562DKC1
GNPNAT1ENSG00000100522.4612.45900898.58580-0.553003.348901.93400K562EEF2
GNPNAT1ENSG00000100522.4612.32900868.24820-0.503803.982602.87120K562EFTUD2
GNPNAT1ENSG00000100522.4889.440301214.62170-0.449505.537704.57200K562EIF2S2
GNPNAT1ENSG00000100522.4556.69510750.42880-0.430803.359902.45790K562EIF4A3
GNPNAT1ENSG00000100522.4503.76970675.77230-0.423803.828602.43550K562EIF4B
GNPNAT1ENSG00000100522.41451.001201795.74910-0.307503.478602.42840K562EIF4G2
GNPNAT1ENSG00000100522.4768.46850984.70940-0.357702.559701.74510K562FIP1L1
GNPNAT1ENSG00000100522.4463.01670620.00640-0.421202.558401.68180K562FTO
GNPNAT1ENSG00000100522.41114.92740810.429700.460102.794602.08260K562G3BP2
GNPNAT1ENSG00000100522.4460.39230686.32530-0.576004.935103.87780K562GPKOW
GNPNAT1ENSG00000100522.41132.012601618.70670-0.516004.323503.38280K562GRSF1
GNPNAT1ENSG00000100522.4260.86750708.55930-1.4416020.1168018.58860K562HNRNPC
GNPNAT1ENSG00000100522.41386.14050918.029800.594405.952604.07240K562HNRNPK
GNPNAT1ENSG00000100522.41667.080301335.011200.320402.483501.72580K562HSPD1
GNPNAT1ENSG00000100522.4419.77360586.08050-0.481502.385001.52760K562KRR1
GNPNAT1ENSG00000100522.4723.90990967.51490-0.418504.958503.89970K562MTPAP
GNPNAT1ENSG00000100522.4500.82850921.05810-0.879002.525901.59130K562PABPN1
GNPNAT1ENSG00000100522.4482.82870857.79270-0.829108.517907.06100K562PCBP3
GNPNAT1ENSG00000100522.4401.43630657.94330-0.712807.763306.44630K562POLR2G
GNPNAT1ENSG00000100522.4464.15170635.27120-0.452802.787901.87990K562PSIP1
GNPNAT1ENSG00000100522.4681.13690947.08680-0.475603.812602.50440K562NELFE
GNPNAT1ENSG00000100522.4591.725201086.74350-0.8770020.4122018.23600K562SRPK2
GNPNAT1ENSG00000100522.4671.70210868.67470-0.371002.617801.60170K562SRSF5
GNPNAT1ENSG00000100522.4579.04280818.13230-0.498703.306402.18860K562SUPV3L1
GNPNAT1ENSG00000100522.4545.27560931.09810-0.771908.798107.44390K562TARDBP
GNPNAT1ENSG00000100522.4702.30410898.12480-0.354802.740601.92750K562TIA1
GNPNAT1ENSG00000100522.4443.72010611.04010-0.461602.730901.80110K562TIAL1
GNPNAT1ENSG00000100522.4452.87870649.00870-0.519103.899402.73780K562TRIM56
GNPNAT1ENSG00000100522.4871.139501151.73100-0.402802.883101.46230K562TRIP6
GNPNAT1ENSG00000100522.4849.018901202.57800-0.502307.823405.64240K562TROVE2
GNPNAT1ENSG00000100522.4608.43480865.85090-0.509003.819602.60410K562UCHL5
GNPNAT1ENSG00000100522.4474.645001139.86270-1.2639037.4936035.20970K562UPF1
GNPNAT1ENSG00000100522.41352.876901749.35310-0.370803.425002.44850K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GNPNAT1 is not available on ENCORE database.





10 RBPs can affect the splicing of GNPNAT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.072000.000060.00949includedHepG2G3BP1
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.059000.000320.01051includedHepG2HNRNPK
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.115000.000020.00327includedHepG2TBRG4
SEGNPNAT1ENSG00000100522.4chr14-532545505325458953251214532513825325814553258386-0.056000.000630.05434excludedHepG2QKI
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.057000.000570.03742includedHepG2NCBP2
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.067000.000370.04824includedHepG2SSB
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.072000.000080.01047includedHepG2IGF2BP3
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.141000.000320.07036includedHepG2EIF3D
SEGNPNAT1ENSG00000100522.4chr14-5325455053254589532512145325138253258145532583860.146000.000000.00050includedHepG2HNRNPU
A3SSGNPNAT1ENSG00000100522.4chr14-5325121453251410532512145325138253258145532583190.120000.000060.00053longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GNPNAT1 is not avaliable on ENCORE database.