LINC01088

General Information

Gene Name       : LINC01088
Gene ID             : ENSG00000249307.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LINC01088)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LINC01088ENSG00000249307.52.921.752.33ENCSR000AEF
HepG2LINC01088ENSG00000249307.50.000.090.04ENCSR985KAT
K562LINC01088ENSG00000249307.526.8228.2127.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LINC01088 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LINC01088 RNA is bound by 11 proteins.  







eCLIP assay for LINC01088 is not avaliable on ENCORE database.





11 proteins are bound to LINC01088 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr48014857180148676+intron-Distal3.752114.79276K562ZNF622
chr48013286580132966+intron-Distal,intron-Proximal3.406846.67170K562ZNF622
chr48017140180171472+intron-Distal4.138454.07784K562SAFB2
chr48017120180171260+intron-Distal3.974023.86679K562SAFB2
chr48013790980137984+intron-Distal4.028817.71869K562LIN28B
chr48018442580184502+intron-Distal5.113376.49093K562TARDBP
chr48017261080172695+intron-Distal4.465895.16344K562SAFB2
chr48018027680180416+intron-Distal,intron-Proximal4.745625.24754K562LSM11
chr48017112380171201+intron-Distal3.568866.16438K562SAFB2
chr48014492880144957+intron-Distal3.968223.57543K562ILF3
chr48014530180145374+intron-Distal3.730837.97069K562ILF3
chr48014718080147226+intron-Distal3.614314.84851K562ILF3
chr48014860680148675+intron-Distal3.581816.98424K562UCHL5
chr48017380980173854+intron-Distal3.790953.54264K562SAFB2
chr48016687380166955+intron-Distal3.186683.30843K562SLTM
chr48014156780141649+intron-Distal3.934694.45240K562EIF4G2
chr48014599180146047+intron-Distal5.018758.14494K562ILF3
chr48017095680171011+intron-Distal3.611723.12651K562SAFB2
chr48014740980147468+intron-Distal4.704596.70232K562ILF3
chr48014723180147317+intron-Distal5.0691121.18163K562TARDBP
chr48014158980141670+intron-Distal3.958363.68431K562TARDBP
chr48014616680146221+intron-Distal4.414764.33299K562ILF3
chr48018586880186008+intron-Distal4.189233.62025K562MATR3
chr48016882680168892+intron-Distal3.026183.06830K562SAFB2
chr48014722680147345+intron-Distal3.5999717.16458K562ILF3
chr48015315980153228+intron-Distal3.202913.73266K562KHSRP
chr48017385480173929+intron-Distal3.517458.55178K562SAFB2
chr48014587380145947+intron-Distal3.985197.09729K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LINC01088 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LINC01088 is not available on ENCORE database.

  • 69 RBPs can affect the levels of LINC01088.  








The Knockdown/knockout RNA-Seq assay for LINC01088 is not available on ENCORE database.





69 RBPs can affect the gene expression of LINC01088 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LINC01088ENSG00000249307.1387.879204.653106.3812065.2932062.05080HepG2CNOT7
LINC01088ENSG00000249307.151.823704.307503.588609.138107.13180HepG2GRSF1
LINC01088ENSG00000249307.127.338801.400904.286505.181904.23240HepG2RAVER1
LINC01088ENSG00000249307.151.338400.414606.9520010.182909.32880HepG2RBM22
LINC01088ENSG00000249307.148.848902.410204.341007.258305.57520HepG2SRSF3
LINC01088ENSG00000249307.17.273200.0000099999.999902.225501.72010HepG2ZNF622
LINC01088ENSG00000249307.1279.45920407.33330-0.543603.287602.57340K562AKAP8L
LINC01088ENSG00000249307.1168.59530378.78080-1.167809.986307.56890K562APOBEC3C
LINC01088ENSG00000249307.1159.05390302.34680-0.926705.570204.78810K562AQR
LINC01088ENSG00000249307.1246.93440427.39520-0.791407.458505.84730K562ATP5C1
LINC01088ENSG00000249307.1306.79410162.665400.915304.364002.65990K562BCCIP
LINC01088ENSG00000249307.1603.26660389.728200.630206.533004.79670K562CPEB4
LINC01088ENSG00000249307.1129.16380237.71230-0.880005.724904.16520K562DDX3X
LINC01088ENSG00000249307.1292.83020403.20110-0.461403.263502.56520K562DDX47
LINC01088ENSG00000249307.1230.13480438.30480-0.9295010.093008.20730K562DKC1
LINC01088ENSG00000249307.1368.19800206.120200.836903.347002.56770K562EIF2S2
LINC01088ENSG00000249307.153.94170138.12970-1.356504.617303.28660K562EIF3A
LINC01088ENSG00000249307.197.33890154.14830-0.663202.388701.43560K562EIF3D
LINC01088ENSG00000249307.1268.79480429.26610-0.675405.403604.11060K562EIF4G2
LINC01088ENSG00000249307.1545.09210325.549600.743504.846602.63540K562ESF1
LINC01088ENSG00000249307.1267.56790128.244301.060906.382603.87770K562FAM120A
LINC01088ENSG00000249307.1421.82450236.995100.831703.838201.93940K562FASTKD2
LINC01088ENSG00000249307.1389.83390165.366901.237104.033902.64080K562FKBP4
LINC01088ENSG00000249307.163.36720258.27070-2.0271021.8145020.22850K562FXR1
LINC01088ENSG00000249307.1400.87710294.125700.446601.885901.31470K562G3BP2
LINC01088ENSG00000249307.1417.97590274.597700.606002.392201.68720K562GRSF1
LINC01088ENSG00000249307.1658.44480367.548600.841004.784702.43420K562HNRNPA0
LINC01088ENSG00000249307.1671.90540364.403700.8826011.029108.79700K562HNRNPL
LINC01088ENSG00000249307.1298.34490415.03550-0.476302.551601.78480K562HSPD1
LINC01088ENSG00000249307.1239.42710399.43370-0.738404.480203.04480K562IGF2BP2
LINC01088ENSG00000249307.1288.49540406.34440-0.494203.178201.87740K562IGF2BP3
LINC01088ENSG00000249307.1302.58280184.389400.714502.949201.50850K562LARP7
LINC01088ENSG00000249307.1297.01020193.056300.621403.264101.64360K562LIN28B
LINC01088ENSG00000249307.1235.21850419.95290-0.836207.937806.48430K562MAGOH
LINC01088ENSG00000249307.1158.61590419.12580-1.4018018.4106015.97180K562MATR3
LINC01088ENSG00000249307.1365.57550484.25730-0.405602.532801.66870K562MBNL1
LINC01088ENSG00000249307.1633.04850457.559600.468303.372102.12360K562MSI2
LINC01088ENSG00000249307.1454.33420355.152400.355202.337801.59270K562MTPAP
LINC01088ENSG00000249307.1162.55000247.99420-0.609403.131301.82410K562NCBP2
LINC01088ENSG00000249307.1558.40020394.568600.500905.079404.11080K562NSUN2
LINC01088ENSG00000249307.1294.94400410.42550-0.476703.096001.66550K562PCBP1
LINC01088ENSG00000249307.1213.73040373.68390-0.806006.056904.59240K562PCBP2
LINC01088ENSG00000249307.1280.54660441.08240-0.652805.191103.30720K562PNPT1
LINC01088ENSG00000249307.1165.25070277.28680-0.746703.240602.36940K562POLR2G
LINC01088ENSG00000249307.154.23170140.14300-1.369706.076404.96490K562PRPF8
LINC01088ENSG00000249307.1263.07250170.562500.625102.863301.94130K562PSIP1
LINC01088ENSG00000249307.190.45540407.99830-2.1733035.8634033.56840K562PTBP1
LINC01088ENSG00000249307.1755.11930488.119000.629407.342405.75210K562PUM2
LINC01088ENSG00000249307.1195.42380403.94580-1.047608.732807.81650K562PUS1
LINC01088ENSG00000249307.1563.55850280.590901.006006.427604.18520K562RAVER1
LINC01088ENSG00000249307.1228.23550393.59850-0.786206.477005.59540K562RBM15
LINC01088ENSG00000249307.1184.54310391.31100-1.0844010.724608.90900K562RBM22
LINC01088ENSG00000249307.1135.33900278.78530-1.042607.956605.55750K562RBM25
LINC01088ENSG00000249307.1234.72510155.703600.592102.681701.70700K562RCC2
LINC01088ENSG00000249307.188.26400247.02130-1.484708.355106.52490K562SAFB
LINC01088ENSG00000249307.1156.37450307.14840-0.973903.090701.79700K562SF1
LINC01088ENSG00000249307.1136.04790305.65510-1.1678011.385009.58300K562SF3B4
LINC01088ENSG00000249307.176.65070399.95600-2.3835035.9842033.47490K562SRSF1
LINC01088ENSG00000249307.1410.93410261.881900.649905.662803.97500K562SRSF7
LINC01088ENSG00000249307.1529.51820367.338700.527503.282001.89120K562STAU1
LINC01088ENSG00000249307.158.75900278.10480-2.2427025.6928023.39170K562SYNCRIP
LINC01088ENSG00000249307.1274.90090383.08850-0.478802.641101.57800K562TRA2A
LINC01088ENSG00000249307.1160.32150305.13880-0.928504.807902.46480K562TUFM
LINC01088ENSG00000249307.1121.46930284.89650-1.229808.962406.80610K562U2AF1
LINC01088ENSG00000249307.1143.26340294.30380-1.038608.846907.40110K562U2AF2
LINC01088ENSG00000249307.1808.12620528.049100.613806.133404.10690K562UBE2L3
LINC01088ENSG00000249307.11064.20060418.372401.3468039.0287036.71090K562UPF1
LINC01088ENSG00000249307.1503.23290331.450500.602303.849502.42010K562UTP3
LINC01088ENSG00000249307.1589.92740357.983200.720506.401005.03570K562WDR3
LINC01088ENSG00000249307.1276.91700372.29440-0.427002.840301.98300K562WDR43
LINC01088ENSG00000249307.1146.93830268.76040-0.871103.608201.73920K562XRCC6
LINC01088ENSG00000249307.1708.60360340.557701.0570014.8502012.70130K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LINC01088 is not available on ENCORE database.





4 RBPs can affect the splicing of LINC01088 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELINC01088ENSG00000249307.1chr4+8013603480136120801328388013295880227844802278820.226000.000010.00359includedK562NSUN2
SELINC01088ENSG00000249307.1chr4+8013603480136120801328388013295880227844802278820.164000.000180.03474includedK562UPF1
SELINC01088ENSG00000249307.1chr4+801360348013610580132838801329588022784480227882-0.444000.000050.04969excludedK562AARS
SELINC01088ENSG00000249307.1chr4+801360348013610580132838801329588022784480227882-0.404000.000100.00259excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LINC01088 is not avaliable on ENCORE database.