OSTF1

General Information

Gene Name       : OSTF1
Gene ID             : ENSG00000134996.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: OSTF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878OSTF1ENSG00000134996.1138.9032.9135.91ENCSR000AEF
HepG2OSTF1ENSG00000134996.1118.2322.6220.43ENCSR985KAT
K562OSTF1ENSG00000134996.1117.9916.5017.24ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for OSTF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • OSTF1 RNA is bound by 5 proteins.  







eCLIP assay for OSTF1 is not avaliable on ENCORE database.





5 proteins are bound to OSTF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr97776169177761836+3'-UTR4.093734.04666K562NOLC1
chr97776176377761843+3'-UTR4.964964.18952HepG2SUB1
chr97776181377761895+3'-UTR5.186957.88172K562LIN28B
chr97770352177703625+5'-UTR,CDS3.726908.28216K562DDX3X
chr97770346277703521+5'-UTR5.3150710.09716K562DDX3X
chr97774549377745536+CDS,intron-Proximal4.012754.07825K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for OSTF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for OSTF1 is not available on ENCORE database.

  • 63 RBPs can affect the levels of OSTF1.  








The Knockdown/knockout RNA-Seq assay for OSTF1 is not available on ENCORE database.





63 RBPs can affect the gene expression of OSTF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
OSTF1ENSG00000134996.11402.63030569.53150-0.500302.648101.72660HepG2ABCF1
OSTF1ENSG00000134996.11177.58460280.92860-0.661703.608102.48680HepG2ADAR
OSTF1ENSG00000134996.11467.37500270.333200.789705.103203.91810HepG2BCLAF1
OSTF1ENSG00000134996.11301.48810544.97950-0.854108.101607.14180HepG2BOP1
OSTF1ENSG00000134996.11588.55050373.020000.657806.041904.95840HepG2CALR
OSTF1ENSG00000134996.11135.67940323.96150-1.255607.820406.54480HepG2CNOT7
OSTF1ENSG00000134996.11657.32650505.379600.379103.195902.51480HepG2CELF1
OSTF1ENSG00000134996.11194.71010666.10650-1.7744021.1878019.62460HepG2DDX3X
OSTF1ENSG00000134996.11622.73440449.559000.470003.280401.87340HepG2DDX47
OSTF1ENSG00000134996.11190.21040272.72700-0.519902.674401.61140HepG2EIF3G
OSTF1ENSG00000134996.11283.96660591.81850-1.059408.186207.03200HepG2EIF4B
OSTF1ENSG00000134996.11461.88570603.18400-0.385103.066902.43870HepG2ETF1
OSTF1ENSG00000134996.11376.34980275.230900.451302.445001.36520HepG2FASTKD2
OSTF1ENSG00000134996.11180.61860385.75200-1.094707.773005.99040HepG2FUS
OSTF1ENSG00000134996.11430.81250613.22710-0.509403.212502.46870HepG2FXR1
OSTF1ENSG00000134996.11339.19630568.94760-0.746205.718004.77530HepG2G3BP1
OSTF1ENSG00000134996.11396.44390603.89390-0.607204.267903.15150HepG2G3BP2
OSTF1ENSG00000134996.11613.51000499.392000.296802.143601.30950HepG2HNRNPA2B1
OSTF1ENSG00000134996.11209.55190308.68570-0.558802.574401.43550HepG2KHDRBS1
OSTF1ENSG00000134996.11342.17360616.90150-0.850306.834305.87540HepG2MATR3
OSTF1ENSG00000134996.11219.42030631.45550-1.5250018.6243017.07690HepG2NCBP2
OSTF1ENSG00000134996.11429.02560538.80980-0.328702.001901.35030HepG2NOL12
OSTF1ENSG00000134996.11506.50570296.099700.774404.021702.93830HepG2PABPC1
OSTF1ENSG00000134996.11263.76330562.45570-1.0925010.590609.19860HepG2PABPC4
OSTF1ENSG00000134996.11431.75340594.48240-0.461404.300703.57330HepG2PCBP1
OSTF1ENSG00000134996.11178.57980362.68670-1.0222011.039309.64230HepG2PRPF4
OSTF1ENSG00000134996.11225.11260383.88690-0.770004.061102.59890HepG2PRPF6
OSTF1ENSG00000134996.11498.02340604.88990-0.280501.819301.35780HepG2PTBP1
OSTF1ENSG00000134996.11372.01950514.35050-0.467403.004202.38770HepG2PUF60
OSTF1ENSG00000134996.11404.91910546.01660-0.431303.769303.10010HepG2PUM1
OSTF1ENSG00000134996.11378.04810545.61100-0.529304.099303.28990HepG2PUM2
OSTF1ENSG00000134996.11635.03080352.401800.849504.794103.88060HepG2RAVER1
OSTF1ENSG00000134996.11253.78840376.36730-0.568502.804901.80680HepG2RBM27
OSTF1ENSG00000134996.11345.21850673.19950-0.9635014.4868013.43180HepG2NELFE
OSTF1ENSG00000134996.11280.57750626.96640-1.1600019.3767017.99500HepG2RECQL
OSTF1ENSG00000134996.11198.36270347.13090-0.807304.949403.89930HepG2RPS2
OSTF1ENSG00000134996.11367.93060256.500900.520402.599401.68920HepG2SERBP1
OSTF1ENSG00000134996.11313.09340519.59150-0.730804.332103.47860HepG2SF3A3
OSTF1ENSG00000134996.11458.31430629.80110-0.458604.145803.44550HepG2SF3B4
OSTF1ENSG00000134996.11617.44280310.519100.991503.133901.71900HepG2SNRNP200
OSTF1ENSG00000134996.11468.69460657.36270-0.488004.853604.27170HepG2SRSF1
OSTF1ENSG00000134996.11444.37820534.78810-0.267201.810901.34710HepG2SRSF9
OSTF1ENSG00000134996.11293.72770451.75000-0.621003.899202.39440HepG2SSRP1
OSTF1ENSG00000134996.11432.34520577.56470-0.417803.549702.86150HepG2SUCLG1
OSTF1ENSG00000134996.11308.98910590.82620-0.9352012.4060011.34810HepG2TAF15
OSTF1ENSG00000134996.11358.73340527.55480-0.556403.770002.93960HepG2TARDBP
OSTF1ENSG00000134996.11750.76690492.048400.609505.253404.40320HepG2U2AF1
OSTF1ENSG00000134996.11147.64260444.88230-1.5913024.0446022.53950HepG2UTP3
OSTF1ENSG00000134996.11256.47470357.92490-0.480803.307702.58380HepG2ZC3H8
OSTF1ENSG00000134996.11233.24090352.07460-0.594102.895501.56650HepG2ZRANB2
OSTF1ENSG00000134996.11249.86190406.48440-0.702104.260003.56160K562AQR
OSTF1ENSG00000134996.11182.32590276.39970-0.600203.358502.19650K562DDX3X
OSTF1ENSG00000134996.11356.46840492.35350-0.465903.742603.00040K562DDX47
OSTF1ENSG00000134996.11541.43390269.840801.0046013.7914012.37090K562EIF2S2
OSTF1ENSG00000134996.11203.19990288.77040-0.507002.530701.74610K562EIF4A3
OSTF1ENSG00000134996.11398.09810550.59450-0.467903.409702.37050K562EIF4G2
OSTF1ENSG00000134996.11524.58780359.625100.544603.876702.98790K562GRSF1
OSTF1ENSG00000134996.11206.45400306.87340-0.571803.451102.24550K562HNRNPA1
OSTF1ENSG00000134996.11434.76590256.314400.762205.170503.85340K562HNRNPM
OSTF1ENSG00000134996.11559.26210422.555900.404302.214901.50060K562HSPD1
OSTF1ENSG00000134996.11232.04770414.86430-0.838205.999104.74420K562MAGOH
OSTF1ENSG00000134996.11243.83660414.06140-0.763904.909803.64050K562MATR3
OSTF1ENSG00000134996.11728.35370397.996900.871805.556503.79260K562PABPC1
OSTF1ENSG00000134996.11341.39490216.449500.657302.601801.87450K562PRPF8
OSTF1ENSG00000134996.11833.01920506.679400.717207.143006.31630K562PUS1
OSTF1ENSG00000134996.11267.18960387.00030-0.534504.067002.95370K562SRPK2
OSTF1ENSG00000134996.11265.29540399.92090-0.592103.692302.87110K562TARDBP
OSTF1ENSG00000134996.11548.99760405.937600.435403.723202.90080K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for OSTF1 is not available on ENCORE database.





6 RBPs can affect the splicing of OSTF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEOSTF1ENSG00000134996.11chr9+777324197773246677703458777036427774248477742535-0.065000.003410.05605excludedHepG2U2AF1
SEOSTF1ENSG00000134996.11chr9+777324197773246677703458777036427774248477742535-0.106000.000000.00010excludedHepG2U2AF2
SEOSTF1ENSG00000134996.11chr9+777324197773246677703458777036427774248477742535-0.055000.000110.06098excludedHepG2UPF1
SEOSTF1ENSG00000134996.11chr9+777324197773246677703458777036427774248477742535-0.106000.000000.00000excludedHepG2SF3A3
SEOSTF1ENSG00000134996.11chr9+777324197773246677703458777036427774248477742535-0.120000.000000.00051excludedHepG2SF3B4
SEOSTF1ENSG00000134996.11chr9+777557497775584877752453777525327776159877762181-0.185000.003930.05983excludedK562U2AF2
A3SSOSTF1ENSG00000134996.11chr9+7773239477732466777324197773246677703458777036420.126000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for OSTF1 is not avaliable on ENCORE database.