IFT88

General Information

Gene Name       : IFT88
Gene ID             : ENSG00000032742.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: IFT88)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IFT88ENSG00000032742.173.713.263.48ENCSR000AEF
HepG2IFT88ENSG00000032742.175.409.487.44ENCSR985KAT
K562IFT88ENSG00000032742.175.816.226.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IFT88 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IFT88 RNA is bound by 6 proteins.  







eCLIP assay for IFT88 is not avaliable on ENCORE database.





6 proteins are bound to IFT88 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr132114129221141405+5'-UTR,intron-Proximal3.870915.03370HepG2NCBP2
chr132115709521157151+CDS,intron-Proximal4.220396.22576HepG2BCLAF1
chr132117365021173702+CDS5.080346.58593HepG2BCLAF1
chr132118993021189960+CDS,intron-Proximal5.099417.05570HepG2BCLAF1
chr132117115321171217+CDS,intron-Proximal3.190615.40132HepG2BCLAF1
chr132121761721217693+CDS,intron-Distal4.885595.37137HepG2BCLAF1
chr132117034621170378+CDS3.080343.55800HepG2BCLAF1
chr132115710021157164+CDS,intron-Proximal3.854965.52342HepG2PPIG
chr132114856721148615+CDS,intron-Proximal4.163953.20743HepG2PPIG
chr132118996021190016+CDS4.563239.74753HepG2BCLAF1
chr132117605021176073+CDS,intron-Proximal4.955875.23259HepG2BCLAF1
chr132117284221172866+CDS4.176663.02457HepG2BCLAF1
chr132117917321179245+CDS,intron-Proximal4.5303412.43877HepG2BCLAF1
chr132119988721199908+CDS,intron-Proximal3.261623.55800HepG2BCLAF1
chr132115711021157183+CDS,intron-Proximal3.872965.34978HepG2PRPF8
chr132116340821163498+intron-Distal5.135716.58335HepG2QKI
chr132118637221186413+intron-Distal5.899138.30797HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IFT88 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IFT88 is not available on ENCORE database.

  • 65 RBPs can affect the levels of IFT88.  








The Knockdown/knockout RNA-Seq assay for IFT88 is not available on ENCORE database.





65 RBPs can affect the gene expression of IFT88 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IFT88ENSG00000032742.13360.53510465.95400-0.370002.607701.93900HepG2AUH
IFT88ENSG00000032742.13195.60730339.73650-0.796505.360704.56180HepG2BOP1
IFT88ENSG00000032742.13218.95720292.80420-0.419302.353801.73220HepG2CKAP4
IFT88ENSG00000032742.13277.92780414.99300-0.578404.769803.96840HepG2CELF1
IFT88ENSG00000032742.13202.49990354.18120-0.806603.595402.48340HepG2DDX59
IFT88ENSG00000032742.13215.22200341.70500-0.666902.314401.74510HepG2DDX6
IFT88ENSG00000032742.13163.32600328.62840-1.008703.765103.08050HepG2EIF2S1
IFT88ENSG00000032742.13313.85370421.72360-0.426202.379001.62210HepG2EIF4G2
IFT88ENSG00000032742.13427.94550534.98340-0.322101.900601.38230HepG2ETF1
IFT88ENSG00000032742.13197.15130281.16230-0.512102.261201.67260HepG2HNRNPA1
IFT88ENSG00000032742.13188.29690343.92480-0.869103.199002.44950HepG2HNRNPK
IFT88ENSG00000032742.13244.19210406.55300-0.735407.494706.43380HepG2HNRNPL
IFT88ENSG00000032742.13186.72570310.67050-0.734505.938205.07800HepG2HNRNPU
IFT88ENSG00000032742.13314.80640442.53300-0.491303.699302.81570HepG2NOL12
IFT88ENSG00000032742.13198.80770304.85040-0.616702.079201.46050HepG2RAVER1
IFT88ENSG00000032742.13488.77970379.633700.364502.160101.67000HepG2NELFE
IFT88ENSG00000032742.13481.35990333.965500.527303.306902.54190HepG2SF3B1
IFT88ENSG00000032742.13620.76780370.705400.743708.743908.00980HepG2SRSF1
IFT88ENSG00000032742.13272.98740417.05010-0.611405.423904.59000HepG2SRSF5
IFT88ENSG00000032742.13199.06110324.59240-0.705405.485404.56200HepG2SRSF7
IFT88ENSG00000032742.13590.60060438.484200.429603.848703.26620HepG2SSB
IFT88ENSG00000032742.13445.22100333.168600.418202.543502.00320HepG2TAF15
IFT88ENSG00000032742.13218.38050304.57220-0.479902.950102.37230HepG2TRIM56
IFT88ENSG00000032742.13158.58600263.59680-0.733103.777903.04760HepG2U2AF1
IFT88ENSG00000032742.13127.29670344.73840-1.437304.451603.18860HepG2U2AF2
IFT88ENSG00000032742.13111.97600166.40360-0.571501.942301.30660HepG2UCHL5
IFT88ENSG00000032742.13375.81040288.319400.382202.111801.57420HepG2UTP3
IFT88ENSG00000032742.13164.84950257.11200-0.641203.778403.13340K562AGGF1
IFT88ENSG00000032742.13128.46380267.52680-1.058307.759806.61580K562AKAP8L
IFT88ENSG00000032742.13162.62760458.65220-1.4958015.9067014.65680K562AQR
IFT88ENSG00000032742.13123.59560235.74790-0.931605.077003.88180K562BOP1
IFT88ENSG00000032742.13284.61910397.86750-0.483302.982801.83120K562CPEB4
IFT88ENSG00000032742.13415.89140619.54720-0.575004.586703.32050K562CELF1
IFT88ENSG00000032742.13257.00440411.77270-0.680106.223405.30120K562DDX47
IFT88ENSG00000032742.1357.47950123.72030-1.106003.155702.07350K562EIF3A
IFT88ENSG00000032742.1385.41990192.12420-1.169406.142904.51590K562EIF3D
IFT88ENSG00000032742.1389.56520154.35110-0.785203.292802.40160K562EIF4A3
IFT88ENSG00000032742.13187.99690268.54030-0.514402.436801.37160K562GLRX3
IFT88ENSG00000032742.13120.13070239.33350-0.994405.520904.40500K562GPKOW
IFT88ENSG00000032742.13214.18970395.54610-0.885007.018005.80680K562GRSF1
IFT88ENSG00000032742.13144.71910297.81460-1.041203.442002.03560K562HNRNPA2B1
IFT88ENSG00000032742.13137.69090214.52330-0.639702.744402.15000K562HNRNPC
IFT88ENSG00000032742.13203.17400372.10940-0.873007.423305.60910K562HNRNPL
IFT88ENSG00000032742.13183.37500263.21270-0.521402.795001.89610K562HNRNPU
IFT88ENSG00000032742.13163.28150245.08530-0.585902.398101.46250K562IGF2BP2
IFT88ENSG00000032742.13166.71440283.94770-0.768205.339704.11380K562KIF1C
IFT88ENSG00000032742.13117.11420204.35200-0.803103.077702.08600K562KRR1
IFT88ENSG00000032742.13190.22530271.77950-0.514702.342101.38020K562MAK16
IFT88ENSG00000032742.13190.62300282.33310-0.566703.259302.38400K562MTPAP
IFT88ENSG00000032742.13125.53490222.95370-0.828703.531402.50750K562NAA15
IFT88ENSG00000032742.13203.96080313.70840-0.621104.527403.60170K562NSUN2
IFT88ENSG00000032742.13105.62050260.66830-1.303304.044702.79020K562PABPN1
IFT88ENSG00000032742.13155.24990229.31530-0.562702.485301.56070K562PCBP2
IFT88ENSG00000032742.13114.31960310.06770-1.439503.456501.76350K562PPP1R8
IFT88ENSG00000032742.13106.60430192.33910-0.851403.221402.23280K562PSIP1
IFT88ENSG00000032742.13124.00180265.38440-1.097707.309706.47360K562PUS1
IFT88ENSG00000032742.1394.23000169.55390-0.847502.846501.40620K562RAVER1
IFT88ENSG00000032742.13118.41730258.51810-1.126407.613506.65970K562RBM15
IFT88ENSG00000032742.13131.78300320.71410-1.283103.778501.91520K562RBM39
IFT88ENSG00000032742.13106.55410238.48280-1.162303.509202.10900K562SF1
IFT88ENSG00000032742.13209.77040309.53390-0.561303.582002.66210K562SF3A3
IFT88ENSG00000032742.13153.40230227.60210-0.569202.186601.33290K562SF3B1
IFT88ENSG00000032742.1393.87910184.74750-0.976705.778804.51350K562SF3B4
IFT88ENSG00000032742.13130.04370273.73520-1.073803.591902.12400K562SNRNP200
IFT88ENSG00000032742.13160.17160231.75170-0.533002.445001.46560K562SRSF5
IFT88ENSG00000032742.1393.40910169.06020-0.855903.468802.31730K562SUPV3L1
IFT88ENSG00000032742.13122.69900185.00010-0.592402.109101.30400K562TIAL1
IFT88ENSG00000032742.13115.86670196.52020-0.762203.395202.32840K562TRIM56
IFT88ENSG00000032742.13105.80750172.21260-0.702702.691001.61640K562U2AF1
IFT88ENSG00000032742.13116.54070178.93620-0.618602.324301.39950K562UCHL5
IFT88ENSG00000032742.13143.20260269.00000-0.909503.750502.17040K562UTP18
IFT88ENSG00000032742.13168.38210284.62300-0.757304.918003.73380K562WDR3
IFT88ENSG00000032742.13225.76330295.96530-0.390602.153101.39990K562WDR43
IFT88ENSG00000032742.13411.15880543.34040-0.402202.604901.35840K562WRN
IFT88ENSG00000032742.13340.05930516.72530-0.603604.889903.69190K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IFT88 is not available on ENCORE database.





5 RBPs can affect the splicing of IFT88 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEIFT88ENSG00000032742.13chr13+2123736321237525212305032123056921237636212377430.495000.000090.02219includedHepG2TIA1
SEIFT88ENSG00000032742.13chr13+2114715921147290211413042114139521148518211486140.134000.000220.09966includedHepG2UPF1
SEIFT88ENSG00000032742.13chr13+2114180821142136211413042114139521148518211486140.154000.001750.09521includedK562HNRNPL
SEIFT88ENSG00000032742.13chr13+211639492116400621157095211571582116510521165159-0.405000.000740.02007excludedHepG2SRSF1
MXEIFT88ENSG00000032742.13chr13+2124511121245178212648432126500621237636212377432126519221265501-0.081000.017030.096752includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for IFT88 is not avaliable on ENCORE database.