CNNM3

General Information

Gene Name       : CNNM3
Gene ID             : ENSG00000168763.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNNM3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNNM3ENSG00000168763.151.145.353.24ENCSR000AEF
HepG2CNNM3ENSG00000168763.1535.1720.7627.97ENCSR985KAT
K562CNNM3ENSG00000168763.158.507.878.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNNM3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNNM3 RNA is bound by 38 proteins.  







eCLIP assay for CNNM3 is not avaliable on ENCORE database.





38 proteins are bound to CNNM3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr29749888097498987+3'-UTR4.3644123.74598HepG2UPF1
chr29749956897499612+3'-UTR4.074826.74636K562UPF1
chr29749861297498682+3'-UTR4.5940622.43927HepG2UPF1
chr29749877197498823+3'-UTR3.598875.89157HepG2AKAP1
chr29749861697498682+3'-UTR3.8366311.68651HepG2AKAP1
chr29749845097498518+3'-UTR5.2874820.50516HepG2AKAP1
chr29749913197499213+3'-UTR4.2091716.19928HepG2AKAP1
chr29749924597499272+3'-UTR6.7666230.12342HepG2LIN28B
chr29749918797499245+3'-UTR5.9171931.52798HepG2LIN28B
chr29749845197498535+3'-UTR6.9011534.10504HepG2UPF1
chr29749886597499009+3'-UTR4.8660726.79536HepG2AKAP1
chr29749912397499223+3'-UTR3.6525524.79442HepG2UPF1
chr29749940597499458+3'-UTR3.717705.95678K562UPF1
chr29749909097499131+3'-UTR6.1359516.94078HepG2AKAP1
chr29749900997499090+3'-UTR4.7551324.88632HepG2AKAP1
chr29749853597498604+3'-UTR5.4180522.45442HepG2UPF1
chr29749940697499444+3'-UTR3.233056.47639HepG2AKAP1
chr29749921797499269+3'-UTR4.339695.20653K562LIN28B
chr29749853097498591+3'-UTR4.5044310.54173HepG2AKAP1
chr29749898797499081+3'-UTR5.4686335.87545HepG2UPF1
chr29749902197499162+3'-UTR4.1180712.46167K562UPF1
chr29749908197499123+3'-UTR4.4089917.32295HepG2UPF1
chr29749868897498734+3'-UTR4.4777111.17016HepG2AKAP1
chr29749940997499462+3'-UTR4.2263012.05831HepG2UPF1
chr29749086697490939+CDS,intron-Distal,intron-Proximal3.056327.15397HepG2PPIG
chr29748253097482643+CDS4.299973.78162K562HNRNPM
chr29748206297482094+CDS4.064633.71734HepG2RBM15
chr29748265197482682+CDS3.801436.48775HepG2DDX3X
chr29748271297482753+CDS3.590623.04831K562RBM15
chr29748235297482493+CDS3.079475.84019HepG2RBM15
chr29748286497482966+CDS3.287995.62662K562BUD13
chr29748243197482484+CDS3.051794.05787HepG2NOL12
chr29748242197482485+CDS3.600567.05925HepG2FTO
chr29748241097482531+CDS3.136177.30886HepG2SND1
chr29749085697490928+CDS,intron-Distal3.354624.96115HepG2SRSF1
chr29749352297493585+CDS3.095057.33264HepG2GRWD1
chr29748246897482540+CDS3.366757.94840HepG2HNRNPM
chr29748239597482487+CDS3.897206.04229K562RBM15
chr29749381097493855+CDS,intron-Proximal3.5552610.70520HepG2BUD13
chr29749827997498338+CDS,intron-Proximal3.561927.52788HepG2U2AF1
chr29749432697494369+CDS3.045124.73488HepG2GRWD1
chr29748235197482498+CDS3.7918216.81739HepG2RPS3
chr29749393197493937+CDS,intron-Proximal3.871278.17646HepG2AQR
chr29748299297483057+CDS3.556593.21664HepG2UCHL5
chr29748213897482230+CDS3.7901811.89429HepG2GRSF1
chr29749391897493977+CDS,intron-Proximal3.1794917.92555HepG2PRPF8
chr29749390397493955+CDS,intron-Proximal3.968549.85077HepG2PPIG
chr29748214997482208+CDS3.841188.29535HepG2SDAD1
chr29749468597494741+CDS,intron-Proximal4.353593.05889HepG2SF3B4
chr29748235897482446+CDS5.421056.58606HepG2PCBP1
chr29748242597482479+CDS3.505603.92593K562DHX30
chr29748203697482138+CDS3.7178910.60781HepG2GRSF1
chr29749362497493679+CDS,intron-Proximal4.662633.62536K562AQR
chr29749259297492643+CDS3.343606.28230HepG2PPIG
chr29748214397482219+CDS3.5087110.51814HepG2RBM15
chr29748242797482468+CDS4.126926.22597HepG2EFTUD2
chr29748247797482542+CDS4.1962019.61701HepG2DDX3X
chr29748254997482676+CDS4.7534211.53777HepG2HNRNPM
chr29749428697494335+CDS,intron-Proximal4.016895.56912HepG2AQR
chr29748243197482484+CDS4.202103.77023K562ZNF622
chr29748223997482300+CDS3.906258.36810HepG2SDAD1
chr29749481597494874+CDS,intron-Proximal4.0453711.55292HepG2PPIG
chr29748214597482226+CDS3.131035.92963HepG2FASTKD2
chr29748238497482445+CDS4.556066.13272K562AATF
chr29748223997482296+CDS4.132856.95162HepG2RPS3
chr29749269597492714+CDS3.695874.68902HepG2PPIG
chr29748284097482879+CDS4.134736.50190HepG2SDAD1
chr29749486897494918+CDS,intron-Proximal3.390816.41278HepG2PRPF8
chr29748236197482477+CDS4.3044733.84503HepG2DDX3X
chr29748223097482318+CDS3.072655.33129HepG2GRSF1
chr29748240697482464+CDS3.890659.53397HepG2UPF1
chr29749442997494473+CDS,intron-Proximal4.7617710.42975HepG2PRPF8
chr29749251997492596+CDS,intron-Proximal4.120713.74254HepG2SF3B4
chr29748255497482623+CDS3.156819.60041HepG2DDX3X
chr29748256397482602+CDS3.546303.23161HepG2RBM15
chr29749826497498335+CDS,intron-Proximal3.9517216.52402HepG2U2AF2
chr29749363297493728+CDS,intron-Proximal3.208246.62542HepG2EFTUD2
chr29749383397493875+CDS,intron-Proximal3.109747.84823HepG2PPIG
chr29748241297482455+CDS4.273156.89179HepG2SDAD1
chr29749362897493676+CDS,intron-Proximal3.958765.59977HepG2AQR
chr29749363297493682+CDS,intron-Proximal4.1840615.71715HepG2PRPF8
chr29748269697482762+CDS3.819784.29728K562GEMIN5
chr29748239397482471+CDS3.818557.14479HepG2SLTM
chr29748264397482764+CDS3.481523.83677K562HNRNPM
chr29749781497497884+intron-Distal,intron-Proximal3.388595.84225HepG2HNRNPK
chr29748432297484393+intron-Distal3.160883.06005HepG2QKI
chr29748571597485765+intron-Distal3.777114.87260HepG2HNRNPM
chr29749282597492875+intron-Distal4.578883.98292HepG2XRCC6
chr29749816297498225+intron-Distal,intron-Proximal3.227615.92567HepG2RBM5
chr29749033397490404+intron-Distal3.438064.51896HepG2XPO5
chr29749495997495013+intron-Distal,intron-Proximal5.036196.56171HepG2RBM22
chr29749504297495094+intron-Distal3.297573.40206HepG2HNRNPC
chr29748603297486077+intron-Distal3.684903.90822HepG2HNRNPM
chr29749286997492943+intron-Distal3.125723.25288HepG2HNRNPC
chr29749394097493976+intron-Proximal3.812114.49024K562AQR
chr29749272997492783+intron-Proximal4.134225.53837HepG2XPO5
chr29749393797493969+intron-Proximal4.534709.33787HepG2AQR
chr29749393297493940+intron-Proximal3.527313.52230K562AQR
chr29749467797494731+intron-Proximal4.599747.21864HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNNM3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNNM3 is not available on ENCORE database.

  • 74 RBPs can affect the levels of CNNM3.  








The Knockdown/knockout RNA-Seq assay for CNNM3 is not available on ENCORE database.





74 RBPs can affect the gene expression of CNNM3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNNM3ENSG00000168763.11798.405201362.02450-0.7706019.1801017.89190HepG2ACO1
CNNM3ENSG00000168763.111058.573102373.61830-1.1650018.0862016.85400HepG2AKAP1
CNNM3ENSG00000168763.111292.909201963.96290-0.603106.393805.22260HepG2ASCC1
CNNM3ENSG00000168763.111112.80980610.089500.8670012.0164010.88740HepG2BOP1
CNNM3ENSG00000168763.11486.21560745.00510-0.615706.107705.01710HepG2CALR
CNNM3ENSG00000168763.111073.300001361.68540-0.343304.983704.13930HepG2CKAP4
CNNM3ENSG00000168763.11803.03480560.085100.519704.032403.21660HepG2CPSF6
CNNM3ENSG00000168763.11904.721701268.25750-0.487306.322205.42630HepG2CELF1
CNNM3ENSG00000168763.111850.276101363.502100.440309.595808.34610HepG2DAZAP1
CNNM3ENSG00000168763.11530.65690945.14110-0.832808.233406.97920HepG2DDX55
CNNM3ENSG00000168763.111543.545501953.21790-0.339602.080501.53830HepG2DDX6
CNNM3ENSG00000168763.111153.04630822.594100.487104.760903.49000HepG2DHX30
CNNM3ENSG00000168763.11474.32670849.09460-0.840004.601903.45730HepG2EIF3D
CNNM3ENSG00000168763.111818.929102086.68820-0.198102.136901.59500HepG2ETF1
CNNM3ENSG00000168763.111094.596301330.90300-0.282002.189701.44660HepG2EWSR1
CNNM3ENSG00000168763.11896.398601380.54580-0.623005.268004.23370HepG2FIP1L1
CNNM3ENSG00000168763.11667.49580861.03310-0.367302.486601.87150HepG2HNRNPA1
CNNM3ENSG00000168763.11990.214601253.18730-0.339803.598602.55490HepG2HNRNPA2B1
CNNM3ENSG00000168763.111337.49380863.372100.6314011.3576010.03700HepG2HNRNPF
CNNM3ENSG00000168763.111010.511801966.64300-0.9606016.6315015.07020HepG2HNRNPK
CNNM3ENSG00000168763.11987.31690605.872600.704407.036906.08620HepG2HNRNPLL
CNNM3ENSG00000168763.11709.80830952.41830-0.424203.861102.75640HepG2HNRNPM
CNNM3ENSG00000168763.111203.47330951.420300.338904.043303.32160HepG2HNRNPU
CNNM3ENSG00000168763.11830.825801570.88010-0.919006.415804.56910HepG2HSPD1
CNNM3ENSG00000168763.111507.58310850.167500.8263014.7320013.20050HepG2IGF2BP1
CNNM3ENSG00000168763.111543.213301974.12050-0.355302.516701.86950HepG2IGF2BP2
CNNM3ENSG00000168763.111040.435201852.66560-0.832403.048202.01430HepG2IGF2BP3
CNNM3ENSG00000168763.11822.28560971.84210-0.241102.239401.57120HepG2ILF2
CNNM3ENSG00000168763.111448.995001245.034300.218802.474901.51090HepG2KIF1C
CNNM3ENSG00000168763.111655.132202106.08080-0.347602.243401.67170HepG2MATR3
CNNM3ENSG00000168763.11917.298001117.16610-0.284402.055201.35240HepG2MSI2
CNNM3ENSG00000168763.11857.33360617.972700.472202.395101.49960HepG2MTPAP
CNNM3ENSG00000168763.11493.03560868.03860-0.816104.672903.23010HepG2NONO
CNNM3ENSG00000168763.11728.11870941.72670-0.371103.895402.90930HepG2PARN
CNNM3ENSG00000168763.111339.598401914.65690-0.515305.734805.00460HepG2PTBP1
CNNM3ENSG00000168763.111937.233701290.707200.585707.941407.00060HepG2PUF60
CNNM3ENSG00000168763.111640.190701369.164700.260502.450501.81970HepG2PUM2
CNNM3ENSG00000168763.111848.751301387.304000.414207.542306.60790HepG2PUS1
CNNM3ENSG00000168763.111147.681401504.46320-0.390503.308202.38030HepG2RBM15
CNNM3ENSG00000168763.11973.523101744.09450-0.8412019.5518018.43260HepG2RBM22
CNNM3ENSG00000168763.111171.696602130.92480-0.8629012.6331011.63280HepG2NELFE
CNNM3ENSG00000168763.111624.625801984.49370-0.288702.735902.12270HepG2RECQL
CNNM3ENSG00000168763.111295.72150930.176000.478104.187703.37480HepG2RPLP0
CNNM3ENSG00000168763.111465.77050946.968500.630204.242503.07720HepG2RPS10
CNNM3ENSG00000168763.11607.55210826.34850-0.443701.963301.43780HepG2RPS19
CNNM3ENSG00000168763.111131.851401496.38590-0.402802.520801.87760HepG2SF3A3
CNNM3ENSG00000168763.11752.53200599.678000.327501.948001.34920HepG2SF3B1
CNNM3ENSG00000168763.111525.876001993.61110-0.385704.345203.62940HepG2SF3B4
CNNM3ENSG00000168763.111577.445501237.710900.349805.705504.75890HepG2SLBP
CNNM3ENSG00000168763.11692.79330988.05160-0.512208.205507.19030HepG2SMN1
CNNM3ENSG00000168763.111181.61460667.252700.824406.240305.05840HepG2SNRNP70
CNNM3ENSG00000168763.111350.749901969.90700-0.5444011.8689011.02440HepG2SRFBP1
CNNM3ENSG00000168763.111438.528902080.81420-0.532607.010906.34100HepG2SRSF1
CNNM3ENSG00000168763.11455.88020645.30170-0.501302.567401.60670HepG2SRSF3
CNNM3ENSG00000168763.111169.68900848.260600.463406.033305.06800HepG2SRSF7
CNNM3ENSG00000168763.11920.028501692.78080-0.8796015.1118014.00660HepG2SRSF9
CNNM3ENSG00000168763.11994.866401710.37450-0.7817020.7884019.66640HepG2SSB
CNNM3ENSG00000168763.11688.04870940.82630-0.451403.100902.38910HepG2SUPV3L1
CNNM3ENSG00000168763.111296.443801870.08350-0.528507.487906.64080HepG2TAF15
CNNM3ENSG00000168763.11820.53210590.612700.474203.619402.80440HepG2TARDBP
CNNM3ENSG00000168763.111114.98200924.432900.270302.076001.63020HepG2TIAL1
CNNM3ENSG00000168763.111596.065101261.064800.339803.229702.27850HepG2TUFM
CNNM3ENSG00000168763.111140.309101327.06730-0.218802.078701.45860HepG2UPF1
CNNM3ENSG00000168763.111098.552701459.51750-0.409907.318506.53910HepG2ZNF622
CNNM3ENSG00000168763.11667.87170455.985700.550506.063305.27460K562AGGF1
CNNM3ENSG00000168763.11757.62980474.479300.675007.045505.96300K562AKAP8L
CNNM3ENSG00000168763.11412.73330292.279600.497802.976302.09480K562FIP1L1
CNNM3ENSG00000168763.11388.92650484.39180-0.316701.884201.36570K562FXR1
CNNM3ENSG00000168763.11106.88480235.99790-1.142706.681105.47820K562G3BP2
CNNM3ENSG00000168763.11261.62820384.04190-0.553703.345502.69760K562HNRNPC
CNNM3ENSG00000168763.11234.66870359.82370-0.616703.451902.05360K562HNRNPK
CNNM3ENSG00000168763.11720.13760584.039700.302102.221401.42240K562HNRNPU
CNNM3ENSG00000168763.11658.97180503.521800.388102.643701.83920K562KIF1C
CNNM3ENSG00000168763.11103.88650196.98220-0.923103.766702.66190K562KRR1
CNNM3ENSG00000168763.11219.16200315.82510-0.527102.666901.40810K562NONO
CNNM3ENSG00000168763.11522.34650289.058100.853503.744702.54310K562PABPN1
CNNM3ENSG00000168763.11624.72820458.477500.446303.786303.10860K562RBM15
CNNM3ENSG00000168763.11252.46610371.18560-0.556103.298602.09290K562NELFE
CNNM3ENSG00000168763.11651.70320322.326601.015605.009903.04920K562SFPQ
CNNM3ENSG00000168763.11460.51630360.703500.352301.914201.31340K562SRSF1
CNNM3ENSG00000168763.11336.08240447.06600-0.411702.529201.74620K562SYNCRIP
CNNM3ENSG00000168763.11159.42680245.89880-0.625203.087101.39410K562TBRG4
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNNM3 is not available on ENCORE database.





6 RBPs can affect the splicing of CNNM3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNNM3ENSG00000168763.11chr2+9749256997492646974907949749093897493467974948710.286000.001160.01599includedHepG2U2AF2
SECNNM3ENSG00000168763.11chr2+9749770597497805974947329749487197498288974983100.061000.000090.00601includedHepG2MATR3
A3SSCNNM3ENSG00000168763.11chr2+9749471397494871974947329749487197494302974944370.053000.009650.05133longerK562AQR
A5SSCNNM3ENSG00000168763.11chr2+9749256997492719974925699749264697493467974936370.122000.000020.01881longerHepG2LARP4
A5SSCNNM3ENSG00000168763.11chr2+974925699749271997492569974926469749346797494871-0.111000.000040.03010shorterHepG2KHSRP
MXECNNM3ENSG00000168763.11chr2+97493835974939329749430397494437974934679749363797494732974948710.144000.006530.085571includedHepG2FTO

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNNM3 is not avaliable on ENCORE database.