RNASE4

General Information

Gene Name       : RNASE4
Gene ID             : ENSG00000258818.3
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNASE4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNASE4ENSG00000258818.30.180.870.53ENCSR000AEF
HepG2RNASE4ENSG00000258818.3141.46126.28133.87ENCSR985KAT
K562RNASE4ENSG00000258818.30.050.060.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNASE4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNASE4 RNA is bound by 22 proteins.  







eCLIP assay for RNASE4 is not avaliable on ENCORE database.





22 proteins are bound to RNASE4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr142116818621168236+3'-UTR3.068664.75596HepG2DDX55
chr142116859821168647+3'-UTR5.051606.67079HepG2LIN28B
chr142116166421161731+3'-UTR,CDS,intron-Distal,intron-Proximal4.548753.59236HepG2AQR
chr142116868321168708+3'-UTR3.722197.71636HepG2LARP4
chr142116831721168367+3'-UTR3.214553.84724HepG2IGF2BP1
chr142116819421168247+3'-UTR3.972534.05830HepG2TIA1
chr142116175121161790+3'-UTR,CDS,intron-Distal3.963985.65930HepG2RBM15
chr142116797721168008+3'-UTR4.0958812.81474HepG2RPS3
chr142116174521161802+3'-UTR,CDS,intron-Distal5.9294856.90809HepG2RPS3
chr142116751321167522+3'-UTR,CDS,intron-Proximal4.026268.12455HepG2DDX3X
chr142116849021168530+3'-UTR3.106543.22368HepG2TIAL1
chr142116170421161742+3'-UTR,CDS,intron-Distal,intron-Proximal3.580198.13782HepG2DDX3X
chr142116835821168403+3'-UTR4.554226.07680HepG2LIN28B
chr142116174221161804+3'-UTR,CDS,intron-Distal3.9782431.82860HepG2DDX3X
chr142116794021167978+3'-UTR,CDS4.2760321.06856HepG2SND1
chr142116847621168620+3'-UTR3.720979.54397HepG2UPF1
chr142115287821152915+5'-UTR,intron-Proximal4.2079629.90201HepG2DDX3X
chr142115262721152680+5'-UTR5.2763120.99214HepG2DDX3X
chr142115281021152860+5'-UTR,intron-Proximal3.251366.44171HepG2DDX3X
chr142115252521152551+5'-UTR5.092008.17272HepG2DDX3X
chr142115288821152959+5'-UTR,intron-Distal,intron-Proximal4.756273.59236HepG2AQR
chr142115288021152918+5'-UTR,intron-Proximal3.6586517.42985HepG2RPS3
chr142115257221152627+5'-UTR5.3118537.55511HepG2DDX3X
chr142116763121167708+3'-UTR,CDS3.671519.99775HepG2SND1
chr142116756021167620+3'-UTR,CDS4.4062047.85896HepG2RPS3
chr142116755621167615+3'-UTR,CDS3.3042028.82284HepG2DDX3X
chr142116755921167659+3'-UTR,CDS3.5729615.03926HepG2RBM15
chr142116791121167963+3'-UTR,CDS3.8260911.49605HepG2RPS3
chr142116787021167911+3'-UTR,CDS3.284279.07906HepG2RPS3
chr142116786721167921+3'-UTR,CDS4.4691330.40921HepG2SND1
chr142116777121167806+3'-UTR,CDS6.0340311.45410HepG2RPS3
chr142116762021167688+3'-UTR,CDS4.8265129.93360HepG2RPS3
chr142116775921167858+3'-UTR,CDS3.7980018.92416HepG2SND1
chr142116792121167940+3'-UTR,CDS4.9784226.46467HepG2SND1
chr142116187921161910+CDS,intron-Distal,intron-Proximal4.1042414.07667HepG2RPS3
chr142115331321153387+intron-Distal4.090626.78885HepG2QKI
chr142116202121162064+CDS,intron-Distal3.7034124.78901HepG2SND1
chr142116187521161923+CDS,intron-Distal,intron-Proximal3.204035.77783HepG2SND1
chr142115297521153076+intron-Distal,intron-Proximal3.060643.57220HepG2PRPF4
chr142115560421155737+intron-Distal3.8951913.60015HepG2HNRNPM
chr142116216921162215+3'-UTR,intron-Distal4.5026712.81474HepG2RPS3
chr142116667021166710+intron-Distal3.394163.27276HepG2HNRNPL
chr142116155621161629+intron-Distal,intron-Proximal3.862743.88679HepG2CSTF2
chr142115302021153084+intron-Distal3.724714.99558HepG2GTF2F1
chr142116141421161521+intron-Distal3.881007.07318HepG2CSTF2
chr142116214521162282+3'-UTR,CDS,intron-Distal3.540017.39049HepG2IGF2BP3
chr142116210821162136+CDS,intron-Distal3.845748.60819HepG2LARP4
chr142116192821161976+CDS,intron-Distal5.3331810.45305HepG2SND1
chr142116220321162276+3'-UTR,intron-Distal3.4438919.12523HepG2LARP4
chr142115301021153070+intron-Distal,intron-Proximal3.299965.15168HepG2EFTUD2
chr142116203221162090+CDS,intron-Distal4.1839318.89925HepG2RPS3
chr142116213621162203+3'-UTR,CDS,intron-Distal3.4157022.08897HepG2LARP4
chr142116206421162121+CDS,intron-Distal4.3042534.66025HepG2SND1
chr142116215721162255+3'-UTR,CDS,intron-Distal3.076213.58748HepG2ZNF800
chr142116193321161971+CDS,intron-Distal4.150823.79347HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNASE4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNASE4 is not available on ENCORE database.

  • 113 RBPs can affect the levels of RNASE4.  








The Knockdown/knockout RNA-Seq assay for RNASE4 is not available on ENCORE database.





113 RBPs can affect the gene expression of RNASE4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNASE4ENSG00000258818.21678.447702828.93450-0.753106.807004.20110HepG2AARS
RNASE4ENSG00000258818.21144.968703444.19830-1.588907.802706.33470HepG2ABCF1
RNASE4ENSG00000258818.21203.796304026.37240-1.74190141.60720139.01470HepG2ACO1
RNASE4ENSG00000258818.22385.955303170.48710-0.410103.922102.75830HepG2ADAR
RNASE4ENSG00000258818.22040.795308768.18440-2.1031064.0496062.04790HepG2AKAP1
RNASE4ENSG00000258818.23475.422704045.01510-0.219002.957602.16630HepG2AKAP8L
RNASE4ENSG00000258818.25262.546107254.96250-0.463204.852703.82510HepG2ASCC1
RNASE4ENSG00000258818.27784.871605096.819900.6110021.2227019.64700HepG2AUH
RNASE4ENSG00000258818.21902.582502886.27360-0.601205.725904.35660HepG2BCCIP
RNASE4ENSG00000258818.22900.764002037.407700.509606.799205.66220HepG2CALR
RNASE4ENSG00000258818.22988.411504102.53530-0.457103.327902.25110HepG2CCAR1
RNASE4ENSG00000258818.23163.894204025.16750-0.347308.621107.57290HepG2CKAP4
RNASE4ENSG00000258818.22984.584107593.72100-1.3473017.8342015.95750HepG2CNOT7
RNASE4ENSG00000258818.22061.580001352.773800.607707.565306.47410HepG2CPSF6
RNASE4ENSG00000258818.2745.441401782.86490-1.2580026.9449024.35680HepG2CSTF2
RNASE4ENSG00000258818.24259.978505384.25910-0.337902.903402.24790HepG2CELF1
RNASE4ENSG00000258818.27007.061005790.582200.275002.838502.08770HepG2DAZAP1
RNASE4ENSG00000258818.22283.508503723.66600-0.7055028.1850026.23040HepG2DDX19B
RNASE4ENSG00000258818.21583.812003493.31380-1.1412029.7464027.87590HepG2DDX21
RNASE4ENSG00000258818.21618.156802149.81690-0.409903.072101.59980HepG2DDX28
RNASE4ENSG00000258818.25443.881108399.31320-0.625608.015907.00040HepG2DDX3X
RNASE4ENSG00000258818.22318.521803002.25970-0.372804.389802.72640HepG2DDX52
RNASE4ENSG00000258818.21819.214502837.79410-0.641506.607605.47420HepG2DDX55
RNASE4ENSG00000258818.22057.903503109.12420-0.595303.838002.65520HepG2DDX5
RNASE4ENSG00000258818.24135.336203079.168200.425405.104503.79770HepG2DHX30
RNASE4ENSG00000258818.22508.138903852.06200-0.6190011.081309.91230HepG2DKC1
RNASE4ENSG00000258818.24324.517803192.476300.437808.674207.48460HepG2DNAJC21
RNASE4ENSG00000258818.22478.824403164.40170-0.352308.110307.06700HepG2DNAJC2
RNASE4ENSG00000258818.21922.222003581.90880-0.8980015.7720013.84810HepG2EEF2
RNASE4ENSG00000258818.24940.599006936.13530-0.489405.262604.46070HepG2EIF2S1
RNASE4ENSG00000258818.21379.994002907.62170-1.0752018.7156016.62890HepG2EIF3D
RNASE4ENSG00000258818.22537.117503299.50430-0.379104.756903.38480HepG2EIF3G
RNASE4ENSG00000258818.22271.848207665.30790-1.7545045.3698042.87370HepG2EIF4A3
RNASE4ENSG00000258818.22859.604807463.13260-1.3840023.2822021.44630HepG2EIF4B
RNASE4ENSG00000258818.24303.062505711.74660-0.408604.818703.76410HepG2EIF4G1
RNASE4ENSG00000258818.24001.382205851.86570-0.5484017.1285015.84000HepG2ETF1
RNASE4ENSG00000258818.22329.396103934.19240-0.7561015.8428013.94450HepG2EWSR1
RNASE4ENSG00000258818.21178.390503477.43580-1.561208.427707.16560HepG2FIP1L1
RNASE4ENSG00000258818.23172.782102362.055200.425603.893702.40370HepG2FKBP4
RNASE4ENSG00000258818.22362.711404547.74180-0.9447010.629908.64030HepG2FUS
RNASE4ENSG00000258818.23673.766807733.78360-1.0739022.5883020.82330HepG2FXR1
RNASE4ENSG00000258818.25283.076407174.31870-0.441504.015103.22170HepG2G3BP1
RNASE4ENSG00000258818.25372.573607616.32780-0.503505.867204.55860HepG2G3BP2
RNASE4ENSG00000258818.21216.212702588.83490-1.0899013.7102011.84530HepG2GEMIN5
RNASE4ENSG00000258818.24334.249907030.10350-0.697806.081004.43010HepG2GRSF1
RNASE4ENSG00000258818.22186.320503223.06230-0.559908.115607.09310HepG2HNRNPA1
RNASE4ENSG00000258818.26956.333005321.140800.386506.572105.23620HepG2HNRNPA2B1
RNASE4ENSG00000258818.21969.878303585.09950-0.8639017.8578016.25560HepG2HNRNPC
RNASE4ENSG00000258818.23474.446701951.554700.8321029.1750027.23190HepG2HNRNPF
RNASE4ENSG00000258818.2992.485401463.38250-0.560205.527404.66960HepG2HNRNPLL
RNASE4ENSG00000258818.21488.943602398.23390-0.687703.620002.54240HepG2HNRNPM
RNASE4ENSG00000258818.22499.491503561.39410-0.5108013.3684012.11380HepG2HNRNPU
RNASE4ENSG00000258818.23894.165801921.709301.018805.702004.69950HepG2IGF2BP1
RNASE4ENSG00000258818.22827.900907292.57390-1.3667035.4510033.34460HepG2IGF2BP2
RNASE4ENSG00000258818.22981.571703637.83960-0.287006.064105.02230HepG2ILF2
RNASE4ENSG00000258818.24083.491807335.01640-0.8450010.227408.22040HepG2KHSRP
RNASE4ENSG00000258818.24216.437403680.404100.196103.294702.18330HepG2KIF1C
RNASE4ENSG00000258818.22736.167504330.43550-0.662406.474105.19350HepG2LARP4
RNASE4ENSG00000258818.24200.168207736.48270-0.8812014.9244013.45650HepG2MAGOH
RNASE4ENSG00000258818.22942.338907779.81390-1.4028031.5954029.64410HepG2MATR3
RNASE4ENSG00000258818.21661.062403043.02480-0.873407.566805.91890HepG2METAP2
RNASE4ENSG00000258818.22457.247601492.562300.719202.763001.79600HepG2MTPAP
RNASE4ENSG00000258818.24130.689507963.09740-0.9469016.5021015.04040HepG2NCBP2
RNASE4ENSG00000258818.21821.093203422.44950-0.910205.706003.65570HepG2NIP7
RNASE4ENSG00000258818.23864.639005741.86610-0.571205.196704.15610HepG2NOL12
RNASE4ENSG00000258818.25515.967807091.77350-0.362503.034002.27990HepG2PABPC4
RNASE4ENSG00000258818.21888.856003525.12220-0.9002035.3950033.06700HepG2PARN
RNASE4ENSG00000258818.23245.418906957.12980-1.1001027.6234026.04120HepG2PCBP1
RNASE4ENSG00000258818.25192.575503828.852400.439404.529402.33590HepG2PES1
RNASE4ENSG00000258818.21875.209202404.54710-0.358704.407402.85370HepG2PKM
RNASE4ENSG00000258818.23520.247807078.79240-1.0078025.4293024.09150HepG2PTBP1
RNASE4ENSG00000258818.24390.596905480.78580-0.320003.166602.53500HepG2PUF60
RNASE4ENSG00000258818.22992.477105817.71200-0.9591019.0169017.74390HepG2PUM1
RNASE4ENSG00000258818.24344.544705813.70120-0.420304.366903.53440HepG2PUM2
RNASE4ENSG00000258818.22618.025504101.07320-0.6475023.9470022.46600HepG2PUS1
RNASE4ENSG00000258818.26735.618807667.24710-0.186901.867701.33960HepG2QKI
RNASE4ENSG00000258818.2276.676204155.11000-3.9086070.2657067.33990HepG2RAVER1
RNASE4ENSG00000258818.24946.739703663.985900.433007.164505.87370HepG2RBM15
RNASE4ENSG00000258818.22655.627504891.06970-0.8811032.5944031.20290HepG2RBM22
RNASE4ENSG00000258818.22123.555603705.81270-0.803303.023401.91450HepG2RCC2
RNASE4ENSG00000258818.23914.924307878.30490-1.0089025.2394023.93180HepG2NELFE
RNASE4ENSG00000258818.24141.673307337.04690-0.8250016.9402015.62640HepG2RECQL
RNASE4ENSG00000258818.2494.722802829.34310-2.51580125.48680122.55290HepG2RPS19
RNASE4ENSG00000258818.22750.328304209.20160-0.613902.820102.01260HepG2RPS2
RNASE4ENSG00000258818.25249.261107627.96150-0.539204.305803.30810HepG2RPS3A
RNASE4ENSG00000258818.21985.125902839.52980-0.516405.663004.33090HepG2SERBP1
RNASE4ENSG00000258818.22208.631403058.22790-0.469502.100301.51170HepG2SF3A3
RNASE4ENSG00000258818.24515.330107370.55940-0.7069012.4167011.30650HepG2SF3B4
RNASE4ENSG00000258818.21585.175503698.53220-1.2223046.3140044.27850HepG2SMN1
RNASE4ENSG00000258818.22316.426001611.644900.523303.276902.42340HepG2SNRNP70
RNASE4ENSG00000258818.22427.021305524.27050-1.1866079.6530077.92450HepG2SRFBP1
RNASE4ENSG00000258818.22220.054307693.01410-1.7930055.8616054.34310HepG2SRSF1
RNASE4ENSG00000258818.21146.318201558.59530-0.443202.981601.93510HepG2SRSF3
RNASE4ENSG00000258818.23450.133401917.389800.8474011.138309.90350HepG2SRSF7
RNASE4ENSG00000258818.24841.841706258.45780-0.370304.336003.67390HepG2SRSF9
RNASE4ENSG00000258818.23346.924106154.21140-0.8787012.1231010.97850HepG2SUCLG1
RNASE4ENSG00000258818.23663.422005133.40370-0.486703.740002.17540HepG2SUGP2
RNASE4ENSG00000258818.24103.278906914.07570-0.7528016.6361015.42830HepG2TAF15
RNASE4ENSG00000258818.22161.182201426.469000.599307.512306.39390HepG2TARDBP
RNASE4ENSG00000258818.21679.341103460.41520-1.0430033.0485031.66630HepG2TIAL1
RNASE4ENSG00000258818.22693.913003491.50410-0.374104.214403.54690HepG2TRIM56
RNASE4ENSG00000258818.21097.875602973.77280-1.437609.083707.93700HepG2U2AF1
RNASE4ENSG00000258818.23304.183005666.57280-0.7782012.0023010.21710HepG2UBE2L3
RNASE4ENSG00000258818.2211.698701668.82920-2.9788099.6284095.98390HepG2UCHL5
RNASE4ENSG00000258818.21789.808602712.18340-0.5996017.0871015.64270HepG2UPF1
RNASE4ENSG00000258818.23262.523202787.723700.226802.722901.68180HepG2UTP18
RNASE4ENSG00000258818.21271.027002618.50210-1.0427042.1801040.24900HepG2UTP3
RNASE4ENSG00000258818.23031.266904569.09310-0.592004.656703.29880HepG2XRCC6
RNASE4ENSG00000258818.21748.894602780.90310-0.669108.347207.10150HepG2XRN2
RNASE4ENSG00000258818.214.040000.0000099999.999904.849402.80930K562AKAP1
RNASE4ENSG00000258818.216.355800.0000099999.999905.316403.80570K562DDX3X
RNASE4ENSG00000258818.215.611800.0000099999.999905.143603.17990K562DDX6
RNASE4ENSG00000258818.28.324100.0000099999.999902.525001.74150K562EIF4A3
RNASE4ENSG00000258818.27.728300.0000099999.999902.630601.51660K562EIF4B
RNASE4ENSG00000258818.21.9176017.55350-3.194402.979002.14100K562MTPAP
RNASE4ENSG00000258818.210.286500.0000099999.999903.007301.72650K562NCBP2
RNASE4ENSG00000258818.221.703503.639702.576002.256901.52100K562PUF60
RNASE4ENSG00000258818.219.066303.866902.301702.457001.93850K562PUS1
RNASE4ENSG00000258818.217.465503.770502.211602.316501.76590K562RBM15
RNASE4ENSG00000258818.25.9065020.68010-1.807901.947901.33770K562UPF1
RNASE4ENSG00000258818.21.5689017.69530-3.495503.588502.59350K562WDR3
RNASE4ENSG00000258818.22.9225018.40100-2.654502.917202.04850K562WDR43
RNASE4ENSG00000258818.222.988902.091903.458003.663401.64710K562XPO5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNASE4 is not available on ENCORE database.





18 RBPs can affect the splicing of RNASE4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNASE4ENSG00000258818.2chr14+2116170521161809211569402115701421167513211687100.153000.000460.04373includedHepG2G3BP1
SERNASE4ENSG00000258818.2chr14+2116170521161809211528172115291721167513211687100.227000.000000.00000includedHepG2U2AF1
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.103000.000000.00013excludedHepG2PRPF8
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.083000.000010.00046excludedHepG2HNRNPK
SERNASE4ENSG00000258818.2chr14+2116170521161809211528172115291721167513211687100.106000.001010.08762includedHepG2DDX59
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.086000.000010.00134excludedHepG2QKI
SERNASE4ENSG00000258818.2chr14+2116170521161809211528172115291721167513211687100.183000.000110.00222includedHepG2U2AF2
SERNASE4ENSG00000258818.2chr14+2116170521161809211528172115291721167513211687100.446000.000000.00000includedHepG2UCHL5
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.072000.000290.01956excludedHepG2PTBP1
SERNASE4ENSG00000258818.2chr14+2116170521161809211528172115291721167513211687100.125000.000010.01442includedHepG2UPF1
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.071000.000440.02242excludedHepG2MATR3
SERNASE4ENSG00000258818.2chr14+2116170521161809211569402115701421167513211687100.178000.000010.00210includedHepG2DDX6
SERNASE4ENSG00000258818.2chr14+2116702421167184211617052116180921167513211687100.064000.000070.00859includedHepG2HNRNPL
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.065000.003220.06324excludedHepG2SRSF1
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.089000.000600.02042excludedHepG2SF3A3
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.074000.000190.01254excludedHepG2SF3B4
SERNASE4ENSG00000258818.2chr14+211617052116180921152817211529172116751321168710-0.078000.000450.09110excludedHepG2FUBP3
SERNASE4ENSG00000258818.2chr14+2116170521161809211528172115291721167513211687100.163000.000000.00000includedHepG2HNRNPC
MXERNASE4ENSG00000258818.2chr14+21166008211661052116702421167184211528172115291721167513211687100.655000.001700.094141includedHepG2QKI

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNASE4 is not avaliable on ENCORE database.