HMGA1

General Information

Gene Name       : HMGA1
Gene ID             : ENSG00000137309.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HMGA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HMGA1ENSG00000137309.19111.38365.34238.36ENCSR000AEF
HepG2HMGA1ENSG00000137309.19256.33149.21202.77ENCSR985KAT
K562HMGA1ENSG00000137309.191370.291081.861226.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HMGA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HMGA1 RNA is bound by 32 proteins.  







eCLIP assay for HMGA1 is not avaliable on ENCORE database.





32 proteins are bound to HMGA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63421296934212997+3'-UTR,CDS4.57835400.00000K562IGF2BP2
chr63421305834213062+3'-UTR,CDS4.80029400.00000K562IGF2BP2
chr63421323234213288+3'-UTR,CDS3.2700736.74941K562METAP2
chr63421360334213621+3'-UTR3.9275355.19423K562PCBP1
chr63421288834212917+3'-UTR,CDS8.14434255.88416K562IGF2BP2
chr63421381134213817+3'-UTR4.54072400.00000K562IGF2BP2
chr63421340834213450+3'-UTR3.499508.16053HepG2DDX59
chr63421336334213380+3'-UTR,CDS4.84018400.00000K562IGF2BP2
chr63421352234213589+3'-UTR3.1635414.98097HepG2PCBP2
chr63421375334213762+3'-UTR5.35157400.00000K562IGF2BP2
chr63421294034212975+3'-UTR,CDS3.0511913.61445HepG2IGF2BP1
chr63421277834212844+3'-UTR,CDS3.6583613.79072K562SERBP1
chr63421339234213404+3'-UTR5.821888.76192HepG2LIN28B
chr63421357834213585+3'-UTR6.37068400.00000K562IGF2BP2
chr63421356334213574+3'-UTR5.88958400.00000K562IGF2BP2
chr63421392934213975+3'-UTR3.035316.78481K562ZC3H11A
chr63421338034213391+3'-UTR,CDS3.3279224.98234K562LIN28B
chr63421378634213811+3'-UTR5.23105400.00000K562IGF2BP2
chr63421340234213464+3'-UTR5.0253812.07264HepG2UPF1
chr63421367634213722+3'-UTR4.3165416.63590HepG2IGF2BP1
chr63421335134213363+3'-UTR,CDS4.75518400.00000K562IGF2BP2
chr63421358534213587+3'-UTR6.25984400.00000K562IGF2BP2
chr63421382634213839+3'-UTR3.5684941.72515K562METAP2
chr63421352734213563+3'-UTR5.77308400.00000K562IGF2BP2
chr63421279034212819+3'-UTR,CDS3.2571628.28417HepG2IGF2BP1
chr63421352934213582+3'-UTR3.637108.30615HepG2PCBP1
chr63421377134213786+3'-UTR5.29679400.00000K562IGF2BP2
chr63421281534212844+3'-UTR,CDS3.8316412.43329HepG2PCBP2
chr63421322234213274+3'-UTR,CDS4.259843.08342HepG2AKAP1
chr63421281934212869+3'-UTR,CDS3.7841328.37671HepG2IGF2BP1
chr63421279134212812+3'-UTR,CDS3.259437.92768HepG2IGF2BP3
chr63421343534213463+3'-UTR4.13670400.00000K562LIN28B
chr63421293734212969+3'-UTR,CDS4.82215400.00000K562IGF2BP2
chr63421387534213893+3'-UTR4.0699637.99827K562PABPC4
chr63421279034212815+3'-UTR,CDS3.2745213.22892HepG2PCBP2
chr63421270934212764+3'-UTR,CDS4.4408113.39674K562SERBP1
chr63421376534213811+3'-UTR3.4431450.29487K562PCBP1
chr63421321834213238+3'-UTR,CDS4.192708.34487HepG2IGF2BP3
chr63421358734213601+3'-UTR6.40743400.00000K562IGF2BP2
chr63421281534212819+3'-UTR,CDS6.64413400.00000K562IGF2BP2
chr63421393134213966+3'-UTR5.10622400.00000K562IGF2BP2
chr63421293334212997+3'-UTR,CDS3.443364.87121HepG2UPF1
chr63421378634213809+3'-UTR3.0114643.79585K562METAP2
chr63421332934213378+3'-UTR,CDS4.660945.97422HepG2AKAP1
chr63421291934212932+3'-UTR,CDS6.04890400.00000K562IGF2BP2
chr63421334834213379+3'-UTR,CDS3.949038.97314HepG2PCBP2
chr63421365734213716+3'-UTR5.9216513.28526HepG2IGF2BP3
chr63421352634213589+3'-UTR4.20704400.00000K562PCBP1
chr63421282234212835+3'-UTR,CDS5.84011400.00000K562IGF2BP2
chr63421322234213283+3'-UTR,CDS3.8424322.36788HepG2PCBP2
chr63421393734213966+3'-UTR3.5122128.00816K562METAP2
chr63421323534213285+3'-UTR,CDS5.49521400.00000K562PCBP1
chr63421341234213465+3'-UTR3.96382400.00000K562IGF2BP2
chr63421350734213527+3'-UTR5.89714400.00000K562IGF2BP2
chr63421265434212683+3'-UTR,CDS5.2258975.98418K562PCBP1
chr63421305234213080+3'-UTR,CDS3.0972323.75210K562METAP2
chr63421341034213420+3'-UTR4.76831400.00000K562PCBP1
chr63421349734213526+3'-UTR4.3109978.88931K562PCBP1
chr63421391234213927+3'-UTR4.77428400.00000K562IGF2BP2
chr63421393634213969+3'-UTR4.080208.16443HepG2IGF2BP3
chr63421376234213771+3'-UTR5.45777400.00000K562IGF2BP2
chr63421366134213696+3'-UTR3.4428168.81733K562PCBP1
chr63421364534213679+3'-UTR4.52014400.00000K562IGF2BP1
chr63421324434213261+3'-UTR,CDS4.94068400.00000K562IGF2BP2
chr63421321834213240+3'-UTR,CDS5.32585400.00000K562IGF2BP2
chr63421340434213449+3'-UTR4.6936113.05583HepG2LIN28B
chr63421333334213350+3'-UTR,CDS4.46512400.00000K562IGF2BP2
chr63421265434212678+3'-UTR,CDS3.4041223.81012K562METAP2
chr63421301734213093+3'-UTR,CDS7.2005323.47105HepG2PCBP1
chr63421303434213073+3'-UTR,CDS3.8049813.68148HepG2IGF2BP3
chr63421350434213526+3'-UTR3.506145.86328HepG2IGF2BP1
chr63421288534212918+3'-UTR,CDS4.4005662.14685K562PCBP1
chr63421350334213535+3'-UTR3.273075.91053HepG2LARP4
chr63421279134212815+3'-UTR,CDS6.22968400.00000K562IGF2BP2
chr63421360734213645+3'-UTR3.8673648.19472K562IGF2BP1
chr63421300334213039+3'-UTR,CDS4.87279400.00000K562PCBP1
chr63421278634212822+3'-UTR,CDS4.25788400.00000K562PCBP1
chr63421332934213348+3'-UTR,CDS3.899367.43270HepG2PCBP2
chr63421293334213009+3'-UTR,CDS3.7292512.30673HepG2IGF2BP3
chr63421301834213036+3'-UTR,CDS4.78528400.00000K562IGF2BP2
chr63421302934213094+3'-UTR,CDS3.9854616.88951HepG2PCBP2
chr63421277334212784+3'-UTR,CDS3.6897946.44856K562PCBP1
chr63421277534212851+3'-UTR,CDS4.1562119.64628HepG2PCBP1
chr63421262934212666+3'-UTR,CDS3.6525571.42070K562PABPC4
chr63421332134213350+3'-UTR,CDS5.37350400.00000K562PCBP1
chr63421281234212867+3'-UTR,CDS4.2855015.20693HepG2IGF2BP3
chr63421393934213977+3'-UTR3.0498035.00975K562IGF2BP1
chr63421282234212860+3'-UTR,CDS4.54298400.00000K562PCBP1
chr63421362134213638+3'-UTR3.9848852.86148K562PCBP1
chr63421270934212739+3'-UTR,CDS3.264374.67759HepG2LARP4
chr63421350434213507+3'-UTR6.14720400.00000K562IGF2BP2
chr63421260634212681+3'-UTR,CDS,intron-Proximal3.4204014.44224HepG2RPS3
chr63421367334213722+3'-UTR4.87269400.00000K562IGF2BP2
chr63421289434212933+3'-UTR,CDS3.341123.63807HepG2UPF1
chr63421303934213096+3'-UTR,CDS5.60637400.00000K562PCBP1
chr63421340334213435+3'-UTR5.45520400.00000K562LIN28B
chr63421339134213403+3'-UTR6.15917400.00000K562LIN28B
chr63421389334213906+3'-UTR4.0253334.64346K562PABPC4
chr63421296234212983+3'-UTR,CDS4.421055.88337HepG2PCBP1
chr63421376134213802+3'-UTR5.9708110.20187HepG2PCBP1
chr63421392934213967+3'-UTR3.967363.08342HepG2AKAP1
chr63421393434213966+3'-UTR3.3555672.71361K562PABPC4
chr63421331934213373+3'-UTR,CDS4.724898.65045HepG2PCBP1
chr63421300934213034+3'-UTR,CDS3.6534614.71240HepG2IGF2BP3
chr63421292334212994+3'-UTR,CDS4.55731400.00000K562PCBP1
chr63421365334213673+3'-UTR4.40364400.00000K562IGF2BP2
chr63421392934213978+3'-UTR3.2662062.43483K562UPF1
chr63421303634213058+3'-UTR,CDS4.79767400.00000K562IGF2BP2
chr63421303834213052+3'-UTR,CDS3.2246126.93449K562METAP2
chr63421293234212935+3'-UTR,CDS5.49816400.00000K562IGF2BP2
chr63421367934213725+3'-UTR4.25391400.00000K562IGF2BP1
chr63421306234213065+3'-UTR,CDS4.75096400.00000K562IGF2BP2
chr63421332334213375+3'-UTR,CDS4.141405.40760HepG2UPF1
chr63421273334212856+3'-UTR,CDS4.2430710.91243HepG2UPF1
chr63421283534212869+3'-UTR,CDS5.94404400.00000K562IGF2BP2
chr63421322134213232+3'-UTR,CDS3.6571517.17841K562METAP2
chr63421261334212662+3'-UTR,CDS3.2929423.18011K562IGF2BP1
chr63421281934212822+3'-UTR,CDS6.43242400.00000K562IGF2BP2
chr63421342034213472+3'-UTR4.87276400.00000K562PCBP1
chr63421341534213474+3'-UTR4.309858.05173HepG2PCBP1
chr63421359934213643+3'-UTR4.1896723.59648HepG2PCBP2
chr63421322134213235+3'-UTR,CDS5.2182362.68772K562PCBP1
chr63421335034213374+3'-UTR,CDS5.15857400.00000K562PCBP1
chr63421333334213382+3'-UTR,CDS3.8475213.99808HepG2IGF2BP3
chr63421278034212790+3'-UTR,CDS5.96175400.00000K562IGF2BP2
chr63421360134213616+3'-UTR5.91854400.00000K562IGF2BP2
chr63421323834213256+3'-UTR,CDS5.5117510.89699HepG2IGF2BP3
chr63421276534212780+3'-UTR,CDS5.88102400.00000K562IGF2BP2
chr63421357434213578+3'-UTR6.05673400.00000K562IGF2BP2
chr63420504334205073+5'-UTR,intron-Distal3.8708625.12059K562METAP2
chr63420470934204722+5'-UTR3.3437754.20493K562PABPC4
chr63420465634204687+5'-UTR3.1746011.32541K562DDX3X
chr63420465734204725+5'-UTR4.574579.23400HepG2DDX3X
chr63420499534205023+5'-UTR,intron-Distal4.04363400.00000K562YBX3
chr63420497934205092+5'-UTR,intron-Distal,intron-Proximal4.0113526.08846HepG2DDX3X
chr63420498734205015+5'-UTR,intron-Distal3.2763957.21743K562DDX3X
chr63420469834204709+5'-UTR3.7445560.50493K562PABPC4
chr63420851634208583+5'-UTR,CDS3.334984.20287HepG2DDX3X
chr63420497934204987+5'-UTR,intron-Distal,intron-Proximal3.4788627.64991K562DDX3X
chr63420472734204737+5'-UTR3.5719247.90319K562DDX3X
chr63420847434208586+5'-UTR,CDS,intron-Proximal3.993247.44609HepG2AQR
chr63420498434205035+5'-UTR,intron-Distal3.3228710.59174HepG2RPS3
chr63420467334204688+5'-UTR5.39384400.00000K562PABPC4
chr63420473734204740+5'-UTR4.0876543.60750K562DDX3X
chr63420505334205068+5'-UTR,intron-Distal3.2792356.53290K562YBX3
chr63420503534205072+5'-UTR,intron-Distal3.337875.62335HepG2RPS3
chr63420468734204709+5'-UTR3.1081029.18784K562DDX3X
chr63420498534204995+5'-UTR,intron-Distal4.11278400.00000K562YBX3
chr63420470934204727+5'-UTR3.6081961.21224K562DDX3X
chr63420509234205116+5'-UTR,intron-Distal,intron-Proximal4.6454911.21499HepG2AQR
chr63420482034204848+5'-UTR,intron-Distal,intron-Proximal5.1678023.63609K562AQR
chr63420503834205053+5'-UTR,intron-Distal3.4853350.91257K562YBX3
chr63420498934204998+5'-UTR,intron-Distal3.6836226.99796K562METAP2
chr63420468934204698+5'-UTR3.7043463.53436K562PABPC4
chr63420480334204846+5'-UTR,intron-Distal,intron-Proximal3.2875610.23274K562BUD13
chr63420494534205012+5'-UTR,intron-Distal,intron-Proximal3.902395.89850HepG2AQR
chr63420487634204907+5'-UTR,intron-Distal,intron-Proximal4.325149.09415K562LSM11
chr63420499834205037+5'-UTR,intron-Distal3.8975138.03425K562METAP2
chr63420495134204964+5'-UTR,intron-Distal,intron-Proximal7.2284928.86151K562AQR
chr63420480334204820+5'-UTR,intron-Proximal5.0906420.88628K562AQR
chr63420502334205030+5'-UTR,intron-Distal4.14949400.00000K562YBX3
chr63420465434204673+5'-UTR5.98815400.00000K562PABPC4
chr63420469534204729+5'-UTR3.5020110.52099K562DDX24
chr63421261134212616+CDS3.7780432.22472K562PABPC4
chr63421043534210504+CDS,intron-Proximal3.2254613.86318K562SF3B4
chr63421260734212656+CDS,intron-Proximal3.600663.77614HepG2G3BP1
chr63421260734212611+CDS,intron-Proximal3.7775431.64233K562PABPC4
chr63420867634208705+CDS,intron-Proximal6.2820831.15788K562AQR
chr63421048834210495+CDS,intron-Proximal3.386784.72836K562ZNF800
chr63421047934210506+CDS,intron-Proximal4.7592215.45935K562AQR
chr63421261634212629+CDS4.2324556.34579K562PABPC4
chr63421049034210498+CDS3.187377.98451K562DDX24
chr63421261834212638+CDS4.221365.98894K562ZNF800
chr63420866534208694+CDS,intron-Proximal3.176915.62335HepG2RPS3
chr63421126734211295+CDS,intron-Distal3.077347.22169K562APOBEC3C
chr63421129534211340+intron-Distal,intron-Proximal5.8178818.99614K562AQR
chr63420509434205112+intron-Distal,intron-Proximal3.297248.01532K562AQR
chr63420872234208765+intron-Distal,intron-Proximal4.306136.08255HepG2RBM22
chr63421225134212309+intron-Distal3.171513.23948HepG2HNRNPK
chr63420534934205408+intron-Distal3.878916.72825HepG2XRN2
chr63420589434205918+intron-Distal3.5262312.77531K562AQR
chr63420872234208772+intron-Distal,intron-Proximal3.470463.85087K562RBM22
chr63420871534208795+intron-Distal,intron-Proximal3.9051419.93449K562EFTUD2
chr63420872034208778+intron-Distal,intron-Proximal4.2799913.35241K562BUD13
chr63420583734205915+intron-Distal3.1384810.24069K562BUD13
chr63420872734208772+intron-Distal,intron-Proximal5.8944711.20725HepG2BUD13
chr63420873634208765+intron-Distal,intron-Proximal5.6095821.89924K562AQR
chr63420871734208794+intron-Distal,intron-Proximal4.4088923.08701K562PRPF8
chr63420556034205620+intron-Distal4.7667927.90532K562AQR
chr63420511634205130+intron-Distal,intron-Proximal4.5057510.03577HepG2AQR
chr63420511234205133+intron-Distal,intron-Proximal3.597517.02925K562AQR
chr63420539834205486+intron-Distal3.698163.01533HepG2SRSF1
chr63420532734205406+intron-Distal3.7134813.49759K562XRN2
chr63420530934205349+intron-Distal3.996773.29596HepG2XRN2
chr63420536234205428+intron-Distal4.0751528.46160K562AQR
chr63420556234205616+intron-Distal4.220176.95612HepG2PRPF8
chr63421061634210640+intron-Proximal5.0681118.60307K562AQR
chr63420873834208751+intron-Proximal3.930434.22551K562SF3B4
chr63421057734210616+intron-Proximal6.5287438.92605K562AQR
chr63421253434212601+intron-Proximal4.441684.66211HepG2XRN2
chr63421254434212585+intron-Proximal4.158834.10564HepG2CSTF2T
chr63421041234210470+intron-Proximal3.545785.40420HepG2AQR
chr63420870534208736+intron-Proximal7.8253742.50176K562AQR
chr63421254034212597+intron-Proximal4.246027.92595K562SF3B4
chr63421057234210577+intron-Proximal6.6911321.45455K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HMGA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HMGA1 is not available on ENCORE database.

  • 143 RBPs can affect the levels of HMGA1.  








The Knockdown/knockout RNA-Seq assay for HMGA1 is not available on ENCORE database.





143 RBPs can affect the gene expression of HMGA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HMGA1ENSG00000137309.157798.4916012597.97470-0.6919010.789909.13060HepG2ABCF1
HMGA1ENSG00000137309.158857.023605462.229300.6972034.2512032.69490HepG2ACO1
HMGA1ENSG00000137309.1511272.592806814.486800.726009.568207.76830HepG2AKAP8
HMGA1ENSG00000137309.154120.374505487.26080-0.413305.326704.29620HepG2AKAP8L
HMGA1ENSG00000137309.152544.726004649.85280-0.869703.963403.03020HepG2ASCC1
HMGA1ENSG00000137309.1511671.944408319.481100.488408.075007.00190HepG2AUH
HMGA1ENSG00000137309.152201.927603911.73360-0.829002.866901.95130HepG2BCLAF1
HMGA1ENSG00000137309.156602.327309437.40370-0.515408.804906.73890HepG2BUD13
HMGA1ENSG00000137309.154436.786707710.38210-0.7973014.0829012.57300HepG2CALR
HMGA1ENSG00000137309.154116.821602730.165300.592403.479501.31950HepG2CDC40
HMGA1ENSG00000137309.152357.872704417.83130-0.905904.159403.22250HepG2CIRBP
HMGA1ENSG00000137309.154423.234105460.28260-0.303903.447802.72090HepG2CKAP4
HMGA1ENSG00000137309.152057.327503459.31340-0.749702.554301.82070HepG2CNOT7
HMGA1ENSG00000137309.158176.6399011550.43300-0.498406.504905.48310HepG2CPSF6
HMGA1ENSG00000137309.1513628.3228010373.093100.393705.382603.87920HepG2CPSF7
HMGA1ENSG00000137309.156118.172203997.333200.614003.679202.50650HepG2YBX3
HMGA1ENSG00000137309.151634.513503169.87640-0.955607.061604.56110HepG2CSTF2T
HMGA1ENSG00000137309.1510063.354005573.852400.8523036.8969035.09250HepG2CELF1
HMGA1ENSG00000137309.151260.708503412.34970-1.4365044.7939042.55210HepG2DDX21
HMGA1ENSG00000137309.152137.132303341.18150-0.6447011.9524010.10710HepG2DDX24
HMGA1ENSG00000137309.152669.829405382.81150-1.011604.359103.58790HepG2DDX3X
HMGA1ENSG00000137309.155972.0045010274.60390-0.782806.142804.69430HepG2DDX5
HMGA1ENSG00000137309.158637.700304626.310200.9007011.7059010.54310HepG2DDX6
HMGA1ENSG00000137309.152004.587203785.52740-0.917209.094407.42220HepG2DHX30
HMGA1ENSG00000137309.152729.176405225.67690-0.9372023.7579022.25320HepG2DKC1
HMGA1ENSG00000137309.153953.756205580.55530-0.497203.353602.34590HepG2EEF2
HMGA1ENSG00000137309.151811.302803143.90680-0.795503.818602.50690HepG2AGO1
HMGA1ENSG00000137309.152834.985404445.03820-0.648902.157801.62700HepG2EIF2S1
HMGA1ENSG00000137309.1512164.637009555.426300.348204.636203.14320HepG2EIF2S2
HMGA1ENSG00000137309.155909.662104529.747900.383502.750801.85000HepG2EIF3D
HMGA1ENSG00000137309.152377.839103223.70390-0.439106.011404.50710HepG2EIF3G
HMGA1ENSG00000137309.151980.229004911.15490-1.310406.972405.95750HepG2EIF4A3
HMGA1ENSG00000137309.154826.087805912.71110-0.293005.045703.97030HepG2EIF4G1
HMGA1ENSG00000137309.157730.7438010911.99890-0.497207.195705.53540HepG2ESF1
HMGA1ENSG00000137309.156505.563709552.36730-0.5542015.0100013.78960HepG2ETF1
HMGA1ENSG00000137309.1524416.6492012720.592100.940605.613204.55590HepG2FIP1L1
HMGA1ENSG00000137309.156929.7602011570.79880-0.739602.406301.46560HepG2FTO
HMGA1ENSG00000137309.156538.694204958.583400.399001.978101.38920HepG2FXR1
HMGA1ENSG00000137309.154453.5013013092.56750-1.5557042.4441040.31260HepG2GPKOW
HMGA1ENSG00000137309.154262.951902928.790600.541402.656801.32060HepG2HNRNPA0
HMGA1ENSG00000137309.152117.339203962.34930-0.9041012.6171011.40160HepG2HNRNPA1
HMGA1ENSG00000137309.153581.800305507.95120-0.6208017.5456015.59930HepG2HNRNPA2B1
HMGA1ENSG00000137309.157909.442809382.05870-0.246304.032803.18260HepG2HNRNPF
HMGA1ENSG00000137309.156390.090804660.115800.455402.421601.76630HepG2HNRNPK
HMGA1ENSG00000137309.156910.607005459.328000.3400010.418309.18850HepG2HNRNPL
HMGA1ENSG00000137309.154818.4636012494.54610-1.3747040.8767038.90100HepG2HNRNPLL
HMGA1ENSG00000137309.156659.113909238.68890-0.472408.359707.16430HepG2IGF2BP1
HMGA1ENSG00000137309.152459.889604673.13080-0.925804.281503.45800HepG2IGF2BP2
HMGA1ENSG00000137309.157510.568204472.354600.7478011.113109.74880HepG2ILF2
HMGA1ENSG00000137309.154445.327907412.68820-0.737704.415302.83020HepG2KRR1
HMGA1ENSG00000137309.152846.697004960.32990-0.801103.324702.60550HepG2MAGOH
HMGA1ENSG00000137309.152784.381404987.53370-0.841003.621102.90780HepG2MATR3
HMGA1ENSG00000137309.155852.7020010293.72380-0.8146021.2455019.28850HepG2MSI2
HMGA1ENSG00000137309.155529.4808012744.44850-1.2047015.9393013.62170HepG2MTPAP
HMGA1ENSG00000137309.152406.781505104.56400-1.084705.177404.32300HepG2NCBP2
HMGA1ENSG00000137309.157005.8131011079.34790-0.6612011.6732010.23720HepG2NSUN2
HMGA1ENSG00000137309.157075.680203162.943401.161508.313706.73090HepG2PABPC1
HMGA1ENSG00000137309.152197.040004543.86090-1.048405.206704.22840HepG2PABPC4
HMGA1ENSG00000137309.155447.135604333.654400.329802.138901.38680HepG2PARN
HMGA1ENSG00000137309.153183.696404712.43620-0.5658017.4306016.11780HepG2PCBP1
HMGA1ENSG00000137309.156527.185108167.30280-0.323403.321802.48170HepG2PRPF4
HMGA1ENSG00000137309.151438.692003412.89580-1.246205.135304.06970HepG2PRPF8
HMGA1ENSG00000137309.153037.806304795.00970-0.6585014.3419013.28800HepG2PTBP1
HMGA1ENSG00000137309.153587.036405672.98470-0.6613012.6397011.48870HepG2PUF60
HMGA1ENSG00000137309.1510478.383506022.142900.7990059.1368057.15360HepG2PUM1
HMGA1ENSG00000137309.155130.763806017.73220-0.230002.437601.80870HepG2PUM2
HMGA1ENSG00000137309.152894.687005563.52370-0.9426020.9360019.52810HepG2PUS1
HMGA1ENSG00000137309.153164.964305193.26390-0.7145019.7161018.26420HepG2QKI
HMGA1ENSG00000137309.1516488.784003469.647702.2485017.2947015.67810HepG2RAVER1
HMGA1ENSG00000137309.1512520.322007983.909300.649003.497702.93420HepG2RBM22
HMGA1ENSG00000137309.152049.022904713.16410-1.2018039.4409037.17130HepG2RBM25
HMGA1ENSG00000137309.154071.220405336.44390-0.390409.020408.14560HepG2NELFE
HMGA1ENSG00000137309.157123.6228010106.18570-0.504607.081506.06370HepG2RPLP0
HMGA1ENSG00000137309.152090.709803452.59550-0.723702.374101.62820HepG2RPS2
HMGA1ENSG00000137309.151635.143603477.14150-1.088503.854102.90930HepG2RPS3A
HMGA1ENSG00000137309.155834.723303899.055600.5814016.7753015.38520HepG2SAFB2
HMGA1ENSG00000137309.152666.079604423.51070-0.7305011.9736010.08780HepG2SERBP1
HMGA1ENSG00000137309.158697.281403927.502101.146904.225202.46750HepG2SF1
HMGA1ENSG00000137309.156178.558008717.26790-0.496603.414602.66290HepG2SF3A3
HMGA1ENSG00000137309.156265.2031012366.70040-0.9810024.7959022.92930HepG2SF3B1
HMGA1ENSG00000137309.153433.770904992.35020-0.5399016.1606014.91250HepG2SF3B4
HMGA1ENSG00000137309.159273.028603812.808101.282104.684902.72710HepG2SFPQ
HMGA1ENSG00000137309.156593.990804546.795600.536208.917207.86710HepG2SMN1
HMGA1ENSG00000137309.157341.839503549.825401.048306.540105.01440HepG2SMNDC1
HMGA1ENSG00000137309.157641.141303511.575601.121604.348102.62630HepG2SNRNP200
HMGA1ENSG00000137309.156607.8750013760.27770-1.0583012.9437011.26900HepG2SNRNP70
HMGA1ENSG00000137309.1516433.837809017.351300.8658016.2979015.34770HepG2SRFBP1
HMGA1ENSG00000137309.152540.475005210.88130-1.0364033.6265032.37690HepG2SRSF1
HMGA1ENSG00000137309.1522650.6187013307.840600.767207.804306.04650HepG2SRSF3
HMGA1ENSG00000137309.156484.879705601.269000.211203.182002.51840HepG2SRSF5
HMGA1ENSG00000137309.156295.976909217.42640-0.5499017.9651016.46860HepG2SRSF7
HMGA1ENSG00000137309.154723.906304239.285100.156101.854501.38630HepG2SRSF9
HMGA1ENSG00000137309.151856.524507828.88050-2.07620122.90260120.86800HepG2SSB
HMGA1ENSG00000137309.1510223.148807393.025200.467502.594601.35090HepG2SSRP1
HMGA1ENSG00000137309.157510.097206370.166300.237402.551001.94980HepG2SUCLG1
HMGA1ENSG00000137309.151667.310304407.10590-1.402305.235804.35230HepG2SUPV3L1
HMGA1ENSG00000137309.152797.904104683.60030-0.743309.736208.78710HepG2TAF15
HMGA1ENSG00000137309.157486.4707012180.29780-0.7022012.2577010.89810HepG2TARDBP
HMGA1ENSG00000137309.153266.207104303.74230-0.398003.840602.86320HepG2TIA1
HMGA1ENSG00000137309.151967.253204253.81410-1.1126023.2440022.05960HepG2TIAL1
HMGA1ENSG00000137309.155416.110004292.496900.335305.321204.59010HepG2TRIM56
HMGA1ENSG00000137309.158485.2075010880.79020-0.358804.047603.29320HepG2U2AF1
HMGA1ENSG00000137309.1514151.042504082.716601.793205.235203.84410HepG2U2AF2
HMGA1ENSG00000137309.154637.429405866.45480-0.339202.017501.30840HepG2UBE2L3
HMGA1ENSG00000137309.154391.022507730.88770-0.8161042.6796040.62860HepG2UPF1
HMGA1ENSG00000137309.155843.056407946.24260-0.4435010.938609.03330HepG2UTP18
HMGA1ENSG00000137309.1512709.520507463.862400.767809.977608.95250HepG2UTP3
HMGA1ENSG00000137309.155495.743408060.36570-0.552505.485504.59100HepG2ZC3H8
HMGA1ENSG00000137309.157297.336908502.49110-0.220501.832901.36270HepG2ZNF622
HMGA1ENSG00000137309.1520486.4480031742.36770-0.631705.031103.37690K562AARS
HMGA1ENSG00000137309.1546539.3742057136.05080-0.295902.921701.65810K562ABCF1
HMGA1ENSG00000137309.1581169.8261052165.745700.6377031.7284029.89410K562AGGF1
HMGA1ENSG00000137309.1571828.9261057322.204700.325403.667702.49800K562AKAP8
HMGA1ENSG00000137309.1578026.2215054280.807100.523402.744702.09390K562AKAP8L
HMGA1ENSG00000137309.1530589.6635036064.34120-0.237502.011401.49580K562AQR
HMGA1ENSG00000137309.1568265.5612056953.603500.261302.458201.60130K562ATP5C1
HMGA1ENSG00000137309.1557784.4998067274.72200-0.219402.659501.70340K562CELF1
HMGA1ENSG00000137309.1530325.8741023366.627600.376008.678205.69500K562DDX24
HMGA1ENSG00000137309.1540608.0426062541.46620-0.6230026.7030024.87910K562DDX47
HMGA1ENSG00000137309.1525988.7029022358.534100.217002.876101.53470K562DDX6
HMGA1ENSG00000137309.1580335.6578058410.135700.459708.505306.81440K562DKC1
HMGA1ENSG00000137309.1527237.9121024223.137900.169102.430301.31030K562EIF2S1
HMGA1ENSG00000137309.1527053.1280035115.68490-0.376305.131904.19510K562EIF2S2
HMGA1ENSG00000137309.1512810.142009172.414000.4818011.182709.56840K562EIF3G
HMGA1ENSG00000137309.1525614.4190020748.533700.303804.747903.16440K562EIF4B
HMGA1ENSG00000137309.1547857.4543054713.44160-0.193202.746101.81130K562EIF4G2
HMGA1ENSG00000137309.1527075.6927020111.323300.428909.289906.64880K562EWSR1
HMGA1ENSG00000137309.1554493.5429041068.817200.407905.023803.85580K562FIP1L1
HMGA1ENSG00000137309.1516871.2567030161.64030-0.8381014.9568012.16250K562FKBP4
HMGA1ENSG00000137309.1527515.8690040679.70620-0.564008.873907.30040K562FMR1
HMGA1ENSG00000137309.1526350.0118034479.61480-0.387903.673402.60620K562FTO
HMGA1ENSG00000137309.1518989.8412013958.520500.444004.191302.39890K562G3BP1
HMGA1ENSG00000137309.152456.856908404.67340-1.774408.733107.33180K562G3BP2
HMGA1ENSG00000137309.1530434.5224038172.33240-0.326803.830302.90310K562GPKOW
HMGA1ENSG00000137309.1538597.6488046790.93990-0.277703.249002.43230K562GRSF1
HMGA1ENSG00000137309.1524578.2730014609.023600.750403.603702.37380K562IGF2BP2
HMGA1ENSG00000137309.1521768.2453014855.346100.551103.868902.40960K562IGF2BP3
HMGA1ENSG00000137309.1567283.9550057605.558400.224002.467501.69400K562KIF1C
HMGA1ENSG00000137309.1523955.4425032594.14820-0.444302.222301.39670K562KRR1
HMGA1ENSG00000137309.1547891.6659035225.828100.443004.774002.73500K562LIN28B
HMGA1ENSG00000137309.1541688.1576030971.802600.428606.521804.09350K562LSM11
HMGA1ENSG00000137309.1575564.0804055142.649300.454404.637803.13950K562MAK16
HMGA1ENSG00000137309.1582782.4197064532.768200.359204.269903.09870K562MBNL1
HMGA1ENSG00000137309.1545853.0376058319.01140-0.346904.030602.66750K562MSI2
HMGA1ENSG00000137309.1540634.4379053019.11350-0.383806.481205.29190K562MTPAP
HMGA1ENSG00000137309.1561287.0570045232.792100.438103.438302.43280K562NAA15
HMGA1ENSG00000137309.1547247.3940059847.46870-0.341103.708401.96650K562NOL12
HMGA1ENSG00000137309.1563894.0971039739.316300.685003.510902.35720K562PABPN1
HMGA1ENSG00000137309.1533480.8213053793.71040-0.684102.043701.32950K562PCBP3
HMGA1ENSG00000137309.1545858.0299056219.76530-0.293904.388202.62290K562PNPT1
HMGA1ENSG00000137309.1523385.3055041257.48480-0.819102.925402.10090K562POLR2G
HMGA1ENSG00000137309.1557857.1291046619.237200.311502.941702.09200K562PPIG
HMGA1ENSG00000137309.1540690.6041031132.788800.386202.199601.40110K562PSIP1
HMGA1ENSG00000137309.1538456.2441059696.43430-0.6344011.636809.95750K562PUF60
HMGA1ENSG00000137309.1547836.0836063496.95360-0.408607.582205.74260K562PUM1
HMGA1ENSG00000137309.1545938.8082062214.00450-0.4375011.531309.57040K562PUM2
HMGA1ENSG00000137309.1584671.6685052450.866200.690808.107607.12250K562RBM15
HMGA1ENSG00000137309.1538907.1690028411.164200.453508.270906.55390K562RCC2
HMGA1ENSG00000137309.1510477.8353015038.75920-0.521302.807001.70530K562NELFE
HMGA1ENSG00000137309.1512129.0408020182.80170-0.734702.533401.75360K562RPS19
HMGA1ENSG00000137309.1525056.9210036302.87750-0.534905.487104.08630K562SF3B1
HMGA1ENSG00000137309.1512349.182808730.165900.500202.621401.79100K562SF3B4
HMGA1ENSG00000137309.1545542.8463026932.348100.7578017.1842014.15780K562SRFBP1
HMGA1ENSG00000137309.1542141.0139059551.39190-0.4989012.8153010.99910K562SRPK2
HMGA1ENSG00000137309.1533363.1832023058.167000.5329010.704008.51790K562SRSF4
HMGA1ENSG00000137309.1521150.1840013806.395800.615203.408402.22180K562SRSF5
HMGA1ENSG00000137309.1537804.9710053886.92970-0.511407.411205.13800K562SSRP1
HMGA1ENSG00000137309.1522543.5881014789.870800.608003.840903.00120K562TARDBP
HMGA1ENSG00000137309.1523381.7647014267.130700.712606.995405.59980K562TIA1
HMGA1ENSG00000137309.1522468.1232014005.977700.681705.243703.64110K562TRA2A
HMGA1ENSG00000137309.1557062.7952031818.640800.8426017.2370014.43960K562TRIM56
HMGA1ENSG00000137309.155592.142208406.61960-0.588102.568301.79410K562U2AF2
HMGA1ENSG00000137309.1550273.8660062465.71480-0.313303.422602.62900K562UPF1
HMGA1ENSG00000137309.1542760.4276055579.23450-0.378307.144005.84350K562WDR43
HMGA1ENSG00000137309.1533562.5407040627.28100-0.275602.742801.88410K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HMGA1 is not available on ENCORE database.





42 RBPs can affect the splicing of HMGA1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.169000.000000.00365includedK562IGF2BP2
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086920.216000.000000.00002includedK562TIA1
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208692-0.271000.000000.00000excludedHepG2U2AF1
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.107000.000070.00361includedK562AKAP8L
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208659-0.097000.000310.07434excludedK562PUM1
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208659-0.107000.000050.02142excludedK562WDR43
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208659-0.090000.000060.00122excludedHepG2U2AF2
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.212000.000000.00552includedK562NONO
SEHMGA1ENSG00000137309.15chr6+3420498034205087342046553420474034208513342086590.080000.000000.00000includedK562ABCF1
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208659-0.275000.000000.00000excludedK562FXR1
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086920.238000.000010.01217includedHepG2FAM120A
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.121000.000910.06746includedK562SUPV3L1
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.078000.001800.02766includedK562PUS1
SEHMGA1ENSG00000137309.15chr6+342076033420777734206567342067343420851334208692-0.124000.005630.06809excludedK562PUS1
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086920.281000.000180.01645includedHepG2NCBP2
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208692-0.155000.000000.00000excludedHepG2SFPQ
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.145000.000090.05619includedHepG2UPF1
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.138000.000180.06320includedK562UCHL5
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.121000.000980.05041includedK562EFTUD2
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086920.258000.000460.02367includedHepG2MATR3
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208692-0.160000.000390.01047excludedK562U2AF1
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208659-0.155000.000000.00013excludedK562HNRNPM
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208659-0.085000.000880.05765excludedK562HNRNPL
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208692-0.308000.000000.00001excludedHepG2SRSF1
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208659-0.217000.000040.03871excludedK562LARP7
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.146000.000140.07788includedK562HLTF
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.109000.000100.02561includedK562EIF4G2
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.127000.000630.07616includedK562RBM22
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.077000.002310.06354includedK562UTP18
SEHMGA1ENSG00000137309.15chr6+342049803420509434204649342047403420851334208692-0.122000.006360.08682excludedK562U2AF2
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.113000.001690.05623includedK562TARDBP
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.154000.000000.00000includedK562HNRNPU
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.090000.000320.01116includedK562RBM15
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086800.186000.000000.00000includedK562AGGF1
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086590.150000.000000.00000includedK562ZC3H8
SEHMGA1ENSG00000137309.15chr6+3420498034205094342046493420474034208513342086920.283000.000080.00588includedHepG2HNRNPU
A5SSHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420851334208680-0.149000.000010.02208shorterK562HNRNPM
A5SSHMGA1ENSG00000137309.15chr6+3420851334208692342085133420865934210488342105720.143000.000000.00000longerK562U2AF1
A5SSHMGA1ENSG00000137309.15chr6+3420851334208692342085133420865934210488342105720.058000.002690.04331longerK562AQR
A5SSHMGA1ENSG00000137309.15chr6+3420464934205094342046493420474034208513342086800.174000.000000.00000longerK562AGGF1
A5SSHMGA1ENSG00000137309.15chr6+3420851334208680342085133420865934210488342105720.129000.000010.00170longerK562PRPF8
A5SSHMGA1ENSG00000137309.15chr6+3420851334208692342085133420865934210488342105720.070000.000050.00886longerK562EFTUD2
A5SSHMGA1ENSG00000137309.15chr6+3420851334208692342085133420865934210488342105720.088000.001110.06022longerK562U2AF2
A5SSHMGA1ENSG00000137309.15chr6+3420851334208692342085133420865934210488342105720.137000.000000.00152longerK562TAF15
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.063000.003650.06824excludedK562HNRNPC
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.178000.000000.00000excludedK562IGF2BP2
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.140000.000180.00640excludedK562SRSF1
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.168000.000000.00044excludedK562MATR3
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.174000.000000.00001excludedK562TIA1
RIHMGA1ENSG00000137309.15chr6+3420464934205094342046493420474034204980342050940.093000.000590.09516includedK562LARP7
RIHMGA1ENSG00000137309.15chr6+3420464934205094342046493420474034204980342050940.443000.000650.01769includedHepG2SRSF1
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.108000.001060.07165excludedK562XRN2
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.162000.000000.00023excludedK562RBM22
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.068000.009470.08251excludedHepG2HNRNPK
RIHMGA1ENSG00000137309.15chr6+3420464934205094342046493420474034204980342050940.051000.000010.00391includedK562PUM1
RIHMGA1ENSG00000137309.15chr6+3420464934205094342046493420474034204980342050940.069000.000000.00002includedK562AQR
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.182000.000000.00000excludedK562TRA2A
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.171000.000000.00000excludedK562TARDBP
RIHMGA1ENSG00000137309.15chr6+342046493420509434204649342047403420498034205094-0.140000.000330.00906excludedK562PTBP1
MXEHMGA1ENSG00000137309.15chr6+34208513342086593421048834210572342046493420474034211244342112950.077000.000000.000001includedK562XRN2
MXEHMGA1ENSG00000137309.15chr6+34204980342050943420852134208659342046493420474034210488342105720.067000.000000.000031includedK562LIN28B
MXEHMGA1ENSG00000137309.15chr6+34208513342086593421048834210572342046493420474034211244342112950.114000.000000.000001includedK562LARP7
MXEHMGA1ENSG00000137309.15chr6+3420851334208659342104883421057234204649342047403421124434211295-0.113000.000050.004932includedK562SBDS
MXEHMGA1ENSG00000137309.15chr6+3421048834210572342112443421129534208513342086593421260734212928-0.125000.000140.009112includedK562SBDS
MXEHMGA1ENSG00000137309.15chr6+34210488342105723421124434211295342085133420865934212607342129280.096000.000220.027501includedK562PUM1
MXEHMGA1ENSG00000137309.15chr6+34210488342105723421124434211295342085133420869234212607342140080.092000.000010.002651includedK562PUM1
MXEHMGA1ENSG00000137309.15chr6+34204980342050943420852134208692342046493420474034210488342105720.074000.000030.022191includedHepG2UPF1
MXEHMGA1ENSG00000137309.15chr6+34208513342086593421048834210572342046493420474034211244342112950.061000.000000.000001includedK562PRPF8
MXEHMGA1ENSG00000137309.15chr6+34204980342050943420851334208659342046493420474034210488342105720.121000.000000.000001includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HMGA1 is not avaliable on ENCORE database.