CUTA

General Information

Gene Name       : CUTA
Gene ID             : ENSG00000112514.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CUTA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CUTAENSG00000112514.1539.2569.4854.37ENCSR000AEF
HepG2CUTAENSG00000112514.15216.17121.18168.68ENCSR985KAT
K562CUTAENSG00000112514.15313.72177.41245.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CUTA is not avaliable on ENCORE database.



Proteins bound to RNA
  • CUTA RNA is bound by 19 proteins.  







eCLIP assay for CUTA is not avaliable on ENCORE database.





19 proteins are bound to CUTA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63338504433385086-3'-UTR,CDS,intron-Distal3.198017.34292HepG2LARP4
chr63338499033385042-3'-UTR,CDS,intron-Distal,intron-Proximal4.950555.68502HepG2PRPF8
chr63338470933384743-3'-UTR,CDS,intron-Distal4.925965.13703HepG2SUB1
chr63338447833384556-3'-UTR,CDS,intron-Distal,intron-Proximal5.006459.76393HepG2SUB1
chr63338451133384554-3'-UTR,CDS,intron-Distal,intron-Proximal3.9004123.80005HepG2LARP4
chr63338488233384977-3'-UTR,CDS,intron-Distal,intron-Proximal5.0690613.56201HepG2AQR
chr63338469633384704-3'-UTR,CDS,intron-Distal,intron-Proximal3.118944.93938HepG2LARP4
chr63338444133384523-3'-UTR,CDS,intron-Distal,intron-Proximal3.4078912.65815K562APOBEC3C
chr63338439533384545-3'-UTR,CDS,intron-Distal,intron-Proximal3.0484412.35883K562SND1
chr63338469933384746-3'-UTR,CDS,intron-Distal4.028958.40534K562APOBEC3C
chr63338438333384464-3'-UTR,CDS,intron-Distal,intron-Proximal5.250504.55547K562PCBP1
chr63338434033384378-3'-UTR,intron-Distal,intron-Proximal4.9151917.04758K562PABPC4
chr63338502833385087-3'-UTR,CDS,intron-Distal3.048983.59323K562LIN28B
chr63338489533384974-3'-UTR,CDS,intron-Distal,intron-Proximal5.582408.34710K562AQR
chr63338434233384383-3'-UTR,intron-Distal,intron-Proximal4.9811629.91280HepG2LARP4
chr63338472033384735-3'-UTR,CDS,intron-Distal3.599816.89850HepG2LARP4
chr63338469633384754-3'-UTR,CDS,intron-Distal,intron-Proximal3.932773.60656K562NOLC1
chr63338446333384540-3'-UTR,CDS,intron-Distal,intron-Proximal5.1005627.42870K562RPS3
chr63338487433384918-3'-UTR,CDS,intron-Distal4.528059.99604K562APOBEC3C
chr63338449833384554-3'-UTR,CDS,intron-Distal,intron-Proximal4.5547345.73426K562PABPC4
chr63338444933384497-3'-UTR,CDS,intron-Distal,intron-Proximal3.403409.97196HepG2DDX55
chr63338444933384498-3'-UTR,CDS,intron-Distal,intron-Proximal5.6180965.27175K562PABPC4
chr63338470233384742-3'-UTR,CDS,intron-Distal5.0859119.19728K562PABPC4
chr63338440533384449-3'-UTR,CDS,intron-Distal,intron-Proximal4.8672122.54678K562PABPC4
chr63338487333384905-3'-UTR,CDS,intron-Distal,intron-Proximal3.8373410.66732K562PABPC4
chr63338437833384405-3'-UTR,intron-Distal,intron-Proximal5.5588113.04183K562PABPC4
chr63338438333384446-3'-UTR,CDS,intron-Distal,intron-Proximal4.7863136.27857HepG2LARP4
chr63338439433384553-3'-UTR,CDS,intron-Distal,intron-Proximal3.0754114.05790K562DDX6
chr63338491033384959-3'-UTR,CDS,intron-Distal,intron-Proximal3.312846.84530HepG2BUD13
chr63338438933384426-3'-UTR,CDS,intron-Distal,intron-Proximal3.264764.01392K562APOBEC3C
chr63338449733384555-3'-UTR,CDS,intron-Distal,intron-Proximal4.1430314.60522HepG2DDX55
chr63338469633384709-3'-UTR,CDS,intron-Distal,intron-Proximal3.691213.55454HepG2SUB1
chr63338439333384447-3'-UTR,CDS,intron-Distal,intron-Proximal5.2108511.17444HepG2RPS3
chr63338444733384528-3'-UTR,CDS,intron-Distal,intron-Proximal5.6875114.48263HepG2RPS3
chr63338452333384553-3'-UTR,CDS,intron-Distal,intron-Proximal3.224845.35194K562APOBEC3C
chr63338444633384511-3'-UTR,CDS,intron-Distal,intron-Proximal4.3785939.28121HepG2LARP4
chr63338526033385318-5'-UTR,CDS,intron-Distal3.8019914.71706K562RPS3
chr63338554833385609-5'-UTR,intron-Distal,intron-Proximal3.7514216.10484K562DDX3X
chr63338551333385604-5'-UTR,intron-Distal,intron-Proximal5.799289.60748HepG2DDX3X
chr63338563733385669-5'-UTR,CDS,intron-Distal,intron-Proximal4.116455.01580HepG2DDX3X
chr63338586333385865-5'-UTR,CDS,intron-Distal,intron-Proximal3.723858.09458K562YBX3
chr63338540633385467-5'-UTR,CDS,intron-Distal,intron-Proximal3.1313916.51667HepG2LARP4
chr63338586233385896-5'-UTR,CDS,intron-Distal,intron-Proximal4.6841514.59554K562DDX3X
chr63338535233385406-5'-UTR,CDS,intron-Distal,intron-Proximal3.1856015.02426HepG2LARP4
chr63338564033385676-5'-UTR,CDS,intron-Distal,intron-Proximal3.919279.66322K562DDX3X
chr63338573333385786-5'-UTR,CDS,intron-Distal,intron-Proximal3.574577.09702HepG2DDX3X
chr63338546533385481-5'-UTR,CDS,intron-Distal,intron-Proximal4.119555.84843HepG2DDX3X
chr63338578433385833-5'-UTR,intron-Distal,intron-Proximal4.463258.45138K562DDX3X
chr63338534733385424-5'-UTR,CDS,intron-Distal,intron-Proximal3.4401112.82074HepG2RPS3
chr63338554333385596-5'-UTR,intron-Distal,intron-Proximal3.353083.74400HepG2EIF3D
chr63338586533385887-5'-UTR,CDS,intron-Distal,intron-Proximal4.2631013.93110K562YBX3
chr63338526033385324-5'-UTR,CDS,intron-Distal,intron-Proximal3.452956.48369K562APOBEC3C
chr63338534433385401-5'-UTR,CDS,intron-Distal,intron-Proximal3.0616815.79054HepG2DDX3X
chr63338545433385473-5'-UTR,CDS,intron-Distal,intron-Proximal4.1761419.45565K562DDX3X
chr63338525733385296-5'-UTR,CDS,intron-Distal,intron-Proximal3.5120310.96561HepG2LARP4
chr63338525533385347-5'-UTR,CDS,intron-Distal,intron-Proximal3.9761223.11754HepG2RPS3
chr63338540133385452-5'-UTR,CDS,intron-Distal,intron-Proximal3.1913011.53879HepG2DDX3X
chr63338525733385322-5'-UTR,CDS,intron-Distal,intron-Proximal4.112337.76379HepG2DDX55
chr63338459733384658-intron-Distal,intron-Proximal4.084374.75435K562EFTUD2
chr63338492433384996-intron-Distal,intron-Proximal5.303735.24235HepG2EFTUD2
chr63338515033385205-intron-Distal,intron-Proximal5.8921710.20211HepG2EFTUD2
chr63338498033385014-intron-Distal,intron-Proximal3.996163.28461K562BUD13
chr63338475033384803-intron-Distal,intron-Proximal3.654755.93727K562SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CUTA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CUTA is not available on ENCORE database.

  • 100 RBPs can affect the levels of CUTA.  








The Knockdown/knockout RNA-Seq assay for CUTA is not available on ENCORE database.





100 RBPs can affect the gene expression of CUTA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CUTAENSG00000112514.11710.260001354.61970-0.9315011.3866010.33060HepG2ACO1
CUTAENSG00000112514.112225.745802812.95570-0.337802.136801.66310HepG2AKAP1
CUTAENSG00000112514.111677.002002062.70130-0.298703.303402.56420HepG2AUH
CUTAENSG00000112514.111421.477201005.956000.498703.062702.07390HepG2BCCIP
CUTAENSG00000112514.11711.01900928.07390-0.384401.965101.30680HepG2CALR
CUTAENSG00000112514.11864.98290620.903900.478203.748002.96070HepG2CPSF6
CUTAENSG00000112514.112132.874101540.674400.4691011.6773010.32280HepG2DAZAP1
CUTAENSG00000112514.111344.86410989.121400.443102.472801.73700HepG2DDX55
CUTAENSG00000112514.11473.04730705.08200-0.575802.509101.57880HepG2DDX59
CUTAENSG00000112514.111494.480302315.23720-0.631504.561603.78510HepG2DDX6
CUTAENSG00000112514.111040.44860795.581300.387002.926502.20670HepG2DNAJC21
CUTAENSG00000112514.111344.41860788.574500.7696020.8946019.25810HepG2DNAJC2
CUTAENSG00000112514.111816.056802458.35940-0.436903.217602.52920HepG2EIF4A3
CUTAENSG00000112514.111347.965502394.30970-0.828805.270604.34190HepG2EIF4B
CUTAENSG00000112514.112149.380001456.180100.561606.928405.66520HepG2EIF4G2
CUTAENSG00000112514.111393.255602368.37600-0.7654022.5659021.12880HepG2ETF1
CUTAENSG00000112514.111464.699102008.98150-0.455905.277504.20240HepG2FUBP3
CUTAENSG00000112514.111824.283802301.39630-0.335202.083301.50230HepG2G3BP1
CUTAENSG00000112514.111898.672602444.04640-0.364302.283801.47850HepG2G3BP2
CUTAENSG00000112514.11472.16790703.84240-0.576003.946803.19350HepG2GPKOW
CUTAENSG00000112514.111275.51700844.725200.594403.896502.24840HepG2HNRNPA0
CUTAENSG00000112514.111055.48690803.203400.394002.007101.44690HepG2HNRNPA1
CUTAENSG00000112514.111150.50950824.790200.480102.755501.35730HepG2HNRNPAB
CUTAENSG00000112514.111474.24570893.421400.722505.332704.39400HepG2HNRNPC
CUTAENSG00000112514.111874.272701403.370400.417308.932007.78770HepG2HNRNPL
CUTAENSG00000112514.111013.70250671.689800.593705.100004.27150HepG2HNRNPLL
CUTAENSG00000112514.111375.14700951.760800.530803.237201.92510HepG2KHDRBS1
CUTAENSG00000112514.111267.491102496.14530-0.977709.360208.25690HepG2MATR3
CUTAENSG00000112514.112028.874902554.78590-0.332502.060201.50980HepG2NCBP2
CUTAENSG00000112514.11549.02790908.56100-0.726704.247202.87380HepG2NONO
CUTAENSG00000112514.111396.30220912.352300.613803.390902.40190HepG2PABPC1
CUTAENSG00000112514.111455.668302274.47940-0.643904.837203.89350HepG2PABPC4
CUTAENSG00000112514.111986.482802382.71500-0.262403.565702.89540HepG2PCBP1
CUTAENSG00000112514.111140.45700791.590600.526707.295206.13930HepG2PPIL4
CUTAENSG00000112514.111404.178202424.47850-0.7879023.4662022.16700HepG2PTBP1
CUTAENSG00000112514.111819.130401379.726100.398804.790504.02190HepG2PUS1
CUTAENSG00000112514.111623.904302625.81940-0.6933015.2781013.97840HepG2QKI
CUTAENSG00000112514.11922.198201979.49930-1.1020033.4088031.99900HepG2RBM22
CUTAENSG00000112514.111555.590901103.550100.495202.310701.41290HepG2RBM27
CUTAENSG00000112514.111456.68120896.137400.700802.345901.37280HepG2RCC2
CUTAENSG00000112514.111517.577002698.23100-0.8302027.1357025.79850HepG2NELFE
CUTAENSG00000112514.111621.754202513.00070-0.6319016.5807015.27850HepG2RECQL
CUTAENSG00000112514.111315.58430790.367000.7350017.3881015.97090HepG2SAFB2
CUTAENSG00000112514.111491.69550944.388100.659405.091203.31380HepG2SART3
CUTAENSG00000112514.11482.93840664.84000-0.461203.085702.34140HepG2SF3B1
CUTAENSG00000112514.111383.878502524.23650-0.8671028.9982027.43700HepG2SF3B4
CUTAENSG00000112514.111770.545601398.545600.340204.681403.80590HepG2SLBP
CUTAENSG00000112514.111437.04970928.196800.630503.075202.06110HepG2SMNDC1
CUTAENSG00000112514.111483.137902235.72780-0.5921015.4267014.49680HepG2SRFBP1
CUTAENSG00000112514.111499.082102634.73950-0.8136027.9656026.80770HepG2SRSF1
CUTAENSG00000112514.111019.28580715.370900.510703.263102.16760HepG2SRSF3
CUTAENSG00000112514.111182.090801440.06520-0.284802.844002.20950HepG2SRSF5
CUTAENSG00000112514.111403.112501105.398000.344004.417003.56960HepG2SRSF7
CUTAENSG00000112514.111023.827302143.48640-1.0660042.3874040.73450HepG2SRSF9
CUTAENSG00000112514.111291.05700983.933300.391803.184102.18120HepG2SUPT6H
CUTAENSG00000112514.111300.401502368.15970-0.8648020.7200019.38180HepG2TAF15
CUTAENSG00000112514.11877.02410654.690900.421703.105602.34360HepG2TARDBP
CUTAENSG00000112514.111565.675202176.06590-0.474906.611605.32500HepG2TIA1
CUTAENSG00000112514.111424.17880862.362800.723705.498804.84260HepG2TIAL1
CUTAENSG00000112514.111370.89310870.096400.6558013.5116012.40110HepG2TRIM56
CUTAENSG00000112514.111760.822201424.933200.305302.937002.03370HepG2TUFM
CUTAENSG00000112514.11705.757701246.78640-0.821005.649704.76860HepG2U2AF1
CUTAENSG00000112514.11635.831401275.84130-1.004703.119402.07020HepG2U2AF2
CUTAENSG00000112514.111082.63470581.551900.8965010.548009.07040HepG2UCHL5
CUTAENSG00000112514.111379.37840898.356300.618604.522603.10760HepG2XPO5
CUTAENSG00000112514.111717.48640969.199500.825309.643408.30620HepG2XRN2
CUTAENSG00000112514.111410.63300997.761200.499509.405108.28920HepG2ZC3H8
CUTAENSG00000112514.11807.998701305.40280-0.6921012.9521011.99010HepG2ZNF622
CUTAENSG00000112514.113373.251002161.585100.6420019.8309018.42760K562AGGF1
CUTAENSG00000112514.113105.427802375.338900.386603.185802.11580K562AKAP8
CUTAENSG00000112514.114284.993302249.247800.929805.430804.49810K562AKAP8L
CUTAENSG00000112514.113142.805902360.041300.413106.995205.44990K562ATP5C1
CUTAENSG00000112514.112210.418901743.454900.342305.334203.98570K562BCLAF1
CUTAENSG00000112514.111768.010401419.442900.316702.521401.30240K562CIRBP
CUTAENSG00000112514.112618.860602240.806500.224802.566601.50110K562CPEB4
CUTAENSG00000112514.111774.242401322.670300.423605.446703.88670K562CSTF2
CUTAENSG00000112514.111682.227702318.58410-0.462908.840107.75820K562DDX47
CUTAENSG00000112514.113009.597202420.222700.314303.183602.23580K562DKC1
CUTAENSG00000112514.111242.281601662.68610-0.420503.724502.14940K562DNAJC21
CUTAENSG00000112514.11976.920901572.74910-0.687004.497703.18580K562EIF3A
CUTAENSG00000112514.112506.915001582.503700.663609.126207.49070K562FIP1L1
CUTAENSG00000112514.111637.113801266.250200.370503.504001.85380K562G3BP1
CUTAENSG00000112514.11516.006501003.00980-0.958904.107203.20470K562G3BP2
CUTAENSG00000112514.114321.199103136.300900.462304.534703.56950K562GRSF1
CUTAENSG00000112514.111729.202301301.798300.409502.830801.88900K562HNRNPM
CUTAENSG00000112514.112305.925801325.006700.799207.220305.25700K562IGF2BP2
CUTAENSG00000112514.111747.642801347.461100.375103.466502.09360K562IGF2BP3
CUTAENSG00000112514.113307.396002386.941900.470404.268503.21270K562KIF1C
CUTAENSG00000112514.11746.330101008.44940-0.434302.295401.45360K562KRR1
CUTAENSG00000112514.111781.299701391.911200.355803.350102.41820K562MAGOH
CUTAENSG00000112514.113208.913302284.949300.489803.505102.24920K562MAK16
CUTAENSG00000112514.111802.989901388.993300.376303.914902.80280K562MATR3
CUTAENSG00000112514.113242.585702673.988000.278102.793101.87910K562MBNL1
CUTAENSG00000112514.112726.870301874.278300.540804.377303.18970K562NAA15
CUTAENSG00000112514.113984.690801993.602900.999006.919905.13100K562PABPN1
CUTAENSG00000112514.111779.672401360.881100.387002.726201.38480K562PCBP1
CUTAENSG00000112514.112016.034302570.03220-0.350302.532801.73650K562PCBP3
CUTAENSG00000112514.111661.210401971.25920-0.246902.127201.42570K562POLR2G
CUTAENSG00000112514.112924.270201796.694700.702607.267905.81430K562PPIG
CUTAENSG00000112514.115098.321502230.489601.1926029.1789027.39870K562PUS1
CUTAENSG00000112514.114003.109702173.398000.8811013.2239011.92330K562RBM15
CUTAENSG00000112514.11774.325001123.21050-0.536602.990601.97860K562SF3B1
CUTAENSG00000112514.11652.26080918.62990-0.494004.416502.29250K562SND1
CUTAENSG00000112514.111806.218102301.74770-0.349806.566205.19360K562SRPK2
CUTAENSG00000112514.111869.793701325.848000.495902.937202.21190K562SRSF1
CUTAENSG00000112514.111837.002501252.335500.552606.433604.72010K562SRSF5
CUTAENSG00000112514.111811.566202243.71850-0.308703.405501.71000K562SRSF9
CUTAENSG00000112514.112087.739001341.695000.637808.003206.72270K562TARDBP
CUTAENSG00000112514.111856.697301294.255700.520507.081805.67370K562TIA1
CUTAENSG00000112514.111949.373901270.404100.617605.246603.64200K562TRA2A
CUTAENSG00000112514.113396.766202261.632800.586702.944901.59730K562UTP18
CUTAENSG00000112514.111640.962102148.09000-0.388507.370906.05110K562WDR43
CUTAENSG00000112514.111882.016401433.695100.392403.038401.75140K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CUTA is not available on ENCORE database.





14 RBPs can affect the splicing of CUTA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECUTAENSG00000112514.11chr6-3338564533385782333852573338547233385863333859640.119000.000000.00015includedK562UPF1
RICUTAENSG00000112514.11chr6-3338432633384533333843263338443733384525333845330.472000.000000.00000includedHepG2SFPQ
RICUTAENSG00000112514.11chr6-3338467333384919333846733338474633384873333849190.052000.000000.00000includedK562PUS1
RICUTAENSG00000112514.11chr6-3338487333385087333848733338491933385027333850870.059000.000000.00000includedK562PUS1
RICUTAENSG00000112514.11chr6-3338432633384553333843263338443733384525333845530.148000.000000.00002includedHepG2U2AF2
RICUTAENSG00000112514.11chr6-3338432633384553333843263338443733384525333845530.112000.000430.03219includedHepG2HNRNPUL1
RICUTAENSG00000112514.11chr6-3338487333385087333848733338491933385023333850870.254000.001160.01267includedK562AKAP8L
RICUTAENSG00000112514.11chr6-3338487333385087333848733338491933385023333850870.278000.000280.00422includedK562RBM15
RICUTAENSG00000112514.11chr6-3338487333385087333848733338491933385027333850870.055000.000000.00000includedK562U2AF2
RICUTAENSG00000112514.11chr6-3338487333385087333848733338491933385023333850870.288000.000120.00243includedK562UTP18
RICUTAENSG00000112514.11chr6-3338432633384553333843263338443733384525333845530.125000.000240.03370includedHepG2RBFOX2
RICUTAENSG00000112514.11chr6-3338487333385087333848733338491933385023333850870.155000.000470.00344includedK562AQR
MXECUTAENSG00000112514.11chr6-3338469633384746333848733338491933384326333845533338502733385087-0.051000.003270.040782includedK562U2AF2
MXECUTAENSG00000112514.11chr6-33384873333849193338502733385087333846963338474633385257333855930.065000.000010.001381includedK562SBDS
MXECUTAENSG00000112514.11chr6-33384873333849193338502733385087333846963338474633385257333855930.128000.000000.000001includedK562RBM22
MXECUTAENSG00000112514.11chr6-33384696333847463338487333384919333843263338455333385027333850870.063000.001290.054321includedK562IGF2BP2
MXECUTAENSG00000112514.11chr6-33384873333849193338502733385087333846963338474633385257333855930.139000.000000.000001includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CUTA is not avaliable on ENCORE database.