UPF1      eCLIP in K562

Experiment Information (Status: Released)
465465-control
Exp_UID465465
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR456ASBENCSR461LGW
ENCODE_aliasgene-yeo:465gene-yeo:465-control
RBPUPF1UPF1
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB730BOOENCAB730BOO
AntibodyRN108PWRN108PW
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID194220




Replicate Information
Rep_UID465_01465_02465_INPUT
Exp UID465465465
Replicate_typerep1rep2control
ENCODE_ACCESSIONENCLB235NQCENCLB022FVIENCLB424DBJ
ENCODE_aliasgene-yeo:465_01gene-yeo:465_02gene-yeo:465_INPUT
Biosample NameK562_070715K562_061215K562_070715
Biosample_ENCODE_AccessionENCBS517UIRENCBS318IMKENCBS517UIR
Biosample_ENCODE_Aliasgene-yeo:K562_070715gene-yeo:K562_061215gene-yeo:K562_070715
Cell_LineK562K562K562
Culture_Start_Date2015-07-072015-06-122015-07-07
Culture_End_Date2015-08-042015-06-302015-08-04
Passage545




QC Stats
Experiment QC
465465-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID465_01465_02465_INPUT
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID465_01465_02465_INPUT
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1A03A04none
inline_barcode_2G07F05none
i5_barcode506506505
i7_barcode703703704




Sequencing Information
Rep_UID465_01465_02465_INPUT
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/465.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz465final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
465.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz465final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=465)