ITGA6

General Information

Gene Name       : ITGA6
Gene ID             : ENSG00000091409.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ITGA6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ITGA6ENSG00000091409.140.050.110.08ENCSR000AEF
HepG2ITGA6ENSG00000091409.1436.9164.8550.88ENCSR985KAT
K562ITGA6ENSG00000091409.140.000.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ITGA6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ITGA6 RNA is bound by 18 proteins.  







eCLIP assay for ITGA6 is not avaliable on ENCORE database.





18 proteins are bound to ITGA6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2173369234173369312+3'-UTR3.328033.73678HepG2UPF1
chr2173369303173369339+3'-UTR4.190374.15191HepG2LIN28B
chr2173369670173369702+3'-UTR3.753793.29371HepG2IGF2BP1
chr2173370824173370915+3'-UTR5.285666.77531HepG2FUBP3
chr2173369555173369576+3'-UTR3.800253.15159HepG2LARP4
chr2173369229173369300+3'-UTR4.2801613.86857HepG2LIN28B
chr2173368819173368902+3'-UTR,CDS4.437194.01886HepG2LIN28B
chr2173369330173369406+3'-UTR3.341588.08169HepG2IGF2BP1
chr2173370438173370505+3'-UTR3.702995.14779HepG2FAM120A
chr2173369484173369555+3'-UTR4.243305.24608HepG2IGF2BP3
chr2173369242173369308+3'-UTR3.316737.88283HepG2IGF2BP1
chr2173369227173369304+3'-UTR3.172224.79152HepG2IGF2BP3
chr2173369388173369410+3'-UTR4.271083.14501HepG2IGF2BP3
chr2173292421173292505+5'-UTR,intron-Distal3.756576.23335HepG2GRWD1
chr2173292324173292414+5'-UTR,intron-Distal4.7870137.31549HepG2DDX3X
chr2173292479173292538+5'-UTR,CDS,intron-Distal4.4260045.41820HepG2DDX3X
chr2173292417173292479+5'-UTR,intron-Distal4.5381641.44620HepG2DDX3X
chr2173349599173349667+CDS3.070783.47879HepG2PPIG
chr2173354217173354267+CDS,intron-Distal3.211866.09950HepG2BCLAF1
chr2173292538173292591+CDS,intron-Distal3.8739822.43872HepG2DDX3X
chr2173340326173340377+CDS4.096106.31664HepG2LIN28B
chr2173362748173362822+CDS4.6936112.63005HepG2LIN28B
chr2173340325173340351+CDS3.215075.40132HepG2BCLAF1
chr2173335756173335781+CDS,intron-Distal3.846594.09885HepG2BCLAF1
chr2173338836173338901+CDS3.468274.63912HepG2LIN28B
chr2173339780173339828+CDS3.105654.61799HepG2BCLAF1
chr2173355974173356034+CDS3.744664.39950HepG2SND1
chr2173339692173339777+CDS3.241309.00189HepG2BCLAF1
chr2173352926173352992+CDS,intron-Proximal5.391875.68502HepG2PRPF8
chr2173339688173339749+CDS3.672103.01092HepG2LIN28B
chr2173362740173362795+CDS4.217443.19000HepG2SND1
chr2173329089173329136+intron-Distal4.184903.27946HepG2HNRNPM
chr2173300363173300443+intron-Distal3.794243.21162HepG2HNRNPC
chr2173367806173367906+intron-Distal4.190454.24565HepG2HNRNPL
chr2173349267173349309+intron-Distal3.323894.65237HepG2U2AF2
chr2173305761173305854+intron-Distal3.716575.09669HepG2QKI
chr2173332289173332319+intron-Proximal3.9631911.41721HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ITGA6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ITGA6 is not available on ENCORE database.

  • 110 RBPs can affect the levels of ITGA6.  








The Knockdown/knockout RNA-Seq assay for ITGA6 is not available on ENCORE database.





110 RBPs can affect the gene expression of ITGA6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ITGA6ENSG00000091409.103778.163002967.765800.348203.457902.26800HepG2AATF
ITGA6ENSG00000091409.107137.190503149.282301.1802085.3188083.18400HepG2ACO1
ITGA6ENSG00000091409.107669.088704043.351700.9234014.0032012.90260HepG2AKAP1
ITGA6ENSG00000091409.105352.358103869.819000.467802.626401.61430HepG2AKAP8
ITGA6ENSG00000091409.104462.865703164.432400.495905.869304.79010HepG2AKAP8L
ITGA6ENSG00000091409.104241.091303345.545000.342102.775801.99060HepG2ASCC1
ITGA6ENSG00000091409.105426.355204766.915200.186801.947701.35350HepG2AUH
ITGA6ENSG00000091409.103634.425402695.640900.431003.037702.09430HepG2BCLAF1
ITGA6ENSG00000091409.102233.287205802.16180-1.3774021.0031019.59030HepG2BOP1
ITGA6ENSG00000091409.104495.121803417.590600.395303.708002.29180HepG2BUD13
ITGA6ENSG00000091409.103973.233305040.58760-0.343303.299802.46700HepG2CALR
ITGA6ENSG00000091409.104694.964103178.494500.562706.903805.71910HepG2CIRBP
ITGA6ENSG00000091409.101405.403704240.93850-1.5934022.9793020.83120HepG2CNOT7
ITGA6ENSG00000091409.103283.841603828.01640-0.221202.599001.61460HepG2YBX3
ITGA6ENSG00000091409.1011012.860704539.387001.2785079.0402076.63140HepG2CELF1
ITGA6ENSG00000091409.103631.913504881.24540-0.4265013.9137012.46520HepG2DAZAP1
ITGA6ENSG00000091409.102316.732902912.83060-0.330303.521802.59500HepG2DDX19B
ITGA6ENSG00000091409.105638.759503833.369900.5567013.7132011.47830HepG2DDX1
ITGA6ENSG00000091409.102306.767603204.45280-0.474207.059405.61240HepG2DDX24
ITGA6ENSG00000091409.107387.839203049.778901.2763027.3596025.33440HepG2DDX55
ITGA6ENSG00000091409.1011590.957606048.974200.938105.453804.09660HepG2DDX59
ITGA6ENSG00000091409.102867.922604112.10910-0.519904.002402.79340HepG2DDX5
ITGA6ENSG00000091409.1010199.367303327.145401.6160040.3441038.40050HepG2DDX6
ITGA6ENSG00000091409.102540.317103013.11980-0.246202.220501.60220HepG2DKC1
ITGA6ENSG00000091409.102415.990703758.84280-0.6377016.5337014.95270HepG2DNAJC21
ITGA6ENSG00000091409.102759.091203725.62560-0.4333012.7323011.44130HepG2DNAJC2
ITGA6ENSG00000091409.104350.175703015.567900.528503.852302.53360HepG2AGO1
ITGA6ENSG00000091409.104334.361003198.520400.438304.116403.40200HepG2EIF2S1
ITGA6ENSG00000091409.104899.999903460.206500.501807.761205.92220HepG2EIF2S2
ITGA6ENSG00000091409.102733.783203534.76750-0.370702.639702.01440HepG2EIF4A3
ITGA6ENSG00000091409.102484.917803441.54160-0.469903.175002.44120HepG2EIF4B
ITGA6ENSG00000091409.103619.447204612.88840-0.349903.458002.55500HepG2EIF4G2
ITGA6ENSG00000091409.109088.515405473.205800.7316031.5665029.92470HepG2ETF1
ITGA6ENSG00000091409.109714.998204604.603901.0770021.5638019.79170HepG2FIP1L1
ITGA6ENSG00000091409.102989.446302170.793600.461605.861904.73700HepG2FUBP3
ITGA6ENSG00000091409.106179.440604377.572400.497203.437902.19130HepG2FUS
ITGA6ENSG00000091409.102129.885403308.35670-0.635307.046006.00750HepG2G3BP1
ITGA6ENSG00000091409.105747.554403512.189600.7105010.736308.97620HepG2G3BP2
ITGA6ENSG00000091409.105141.326503364.022400.611904.349003.06540HepG2GNB2L1
ITGA6ENSG00000091409.101807.150306038.78050-1.7405027.6819025.90060HepG2GPKOW
ITGA6ENSG00000091409.103851.840103006.921200.357203.690102.57400HepG2HDGF
ITGA6ENSG00000091409.105973.385704193.411600.510302.768801.40350HepG2HLTF
ITGA6ENSG00000091409.102864.577703794.85320-0.405705.036604.20010HepG2HNRNPA1
ITGA6ENSG00000091409.106735.875704485.864500.5864018.5106016.52250HepG2HNRNPA2B1
ITGA6ENSG00000091409.102969.867604221.06420-0.507207.069006.00140HepG2HNRNPC
ITGA6ENSG00000091409.103304.722604731.24720-0.517706.412405.38310HepG2HNRNPF
ITGA6ENSG00000091409.104906.500703349.912400.550507.499606.39230HepG2HNRNPK
ITGA6ENSG00000091409.103991.694504446.52890-0.155702.441301.80400HepG2HNRNPL
ITGA6ENSG00000091409.102890.337705762.88420-0.9956012.3106011.10610HepG2HNRNPLL
ITGA6ENSG00000091409.103152.339004193.15770-0.411609.430708.36230HepG2HNRNPU
ITGA6ENSG00000091409.102582.978004658.98450-0.8510012.8688011.42530HepG2IGF2BP1
ITGA6ENSG00000091409.104358.759003362.887300.374103.288302.55810HepG2IGF2BP2
ITGA6ENSG00000091409.105609.383003155.864100.829703.552602.43770HepG2IGF2BP3
ITGA6ENSG00000091409.104426.338403382.461900.387902.586901.62190HepG2KHSRP
ITGA6ENSG00000091409.104500.975903295.259600.449705.986104.33530HepG2LARP7
ITGA6ENSG00000091409.104255.755903170.690700.424502.643201.61310HepG2METAP2
ITGA6ENSG00000091409.106746.246603728.169500.8555023.1832021.15760HepG2MSI2
ITGA6ENSG00000091409.103932.935203130.198300.329303.460402.09910HepG2NAA15
ITGA6ENSG00000091409.105425.551103672.095400.563106.238205.30370HepG2NCBP2
ITGA6ENSG00000091409.103943.599502799.840700.494102.705601.62480HepG2NONO
ITGA6ENSG00000091409.107415.254205109.616400.537207.754406.54670HepG2NSUN2
ITGA6ENSG00000091409.105074.388503270.289100.633707.833406.63430HepG2PABPC4
ITGA6ENSG00000091409.101435.353402505.38410-0.8036018.6391015.90930HepG2PKM
ITGA6ENSG00000091409.102613.643203466.58900-0.407508.169406.93330HepG2PRPF4
ITGA6ENSG00000091409.106493.320703134.964501.0504057.4629055.68450HepG2PTBP1
ITGA6ENSG00000091409.103095.986504620.33050-0.577609.757708.73250HepG2PUF60
ITGA6ENSG00000091409.108846.355904904.590400.8509062.0637060.03890HepG2PUM1
ITGA6ENSG00000091409.103843.369603207.810600.260704.141203.41400HepG2PUS1
ITGA6ENSG00000091409.1012940.766103999.777801.6938024.0254022.15310HepG2RAVER1
ITGA6ENSG00000091409.106748.837204876.489500.468708.644707.23940HepG2RBM15
ITGA6ENSG00000091409.106124.706004574.556100.420908.831308.02610HepG2RBM22
ITGA6ENSG00000091409.106078.733803081.397300.9801028.0576026.07490HepG2RBM25
ITGA6ENSG00000091409.104096.410703488.911000.231502.279701.77870HepG2NELFE
ITGA6ENSG00000091409.104748.823403249.452900.5473014.2055012.97760HepG2RECQL
ITGA6ENSG00000091409.104022.969705095.86400-0.341102.843402.15220HepG2RPLP0
ITGA6ENSG00000091409.102968.474203664.73580-0.304002.230101.50700HepG2RPS2
ITGA6ENSG00000091409.102986.702604256.71810-0.511203.828402.88690HepG2RPS3A
ITGA6ENSG00000091409.104749.239003740.738000.344303.441902.24140HepG2RPS5
ITGA6ENSG00000091409.105754.059002328.027901.3054028.4310026.43520HepG2RRP9
ITGA6ENSG00000091409.103250.189103734.19730-0.200302.979802.31740HepG2SAFB2
ITGA6ENSG00000091409.106520.739204222.516500.626805.309304.35740HepG2SF3A3
ITGA6ENSG00000091409.107684.033405704.341600.429702.916402.19140HepG2SF3B1
ITGA6ENSG00000091409.105210.840003263.895000.6748024.2244022.76920HepG2SF3B4
ITGA6ENSG00000091409.105784.539004429.982800.3848011.5034010.23590HepG2SLBP
ITGA6ENSG00000091409.105791.768204354.713400.4113014.8413013.53520HepG2SMN1
ITGA6ENSG00000091409.109640.452806346.999700.602902.103701.42530HepG2SNRNP70
ITGA6ENSG00000091409.109262.780105166.737800.8421050.0105048.57620HepG2SRFBP1
ITGA6ENSG00000091409.107750.568903406.802901.1858085.9432084.15430HepG2SRSF1
ITGA6ENSG00000091409.1011792.308406137.252400.942104.106602.86090HepG2SRSF3
ITGA6ENSG00000091409.107720.923904561.790200.7591017.4619016.08220HepG2SRSF5
ITGA6ENSG00000091409.102966.874504648.09810-0.647708.151907.06320HepG2SRSF7
ITGA6ENSG00000091409.105720.413902771.618301.0453047.3005045.57220HepG2SRSF9
ITGA6ENSG00000091409.106615.326403737.742400.823506.861005.01100HepG2SUB1
ITGA6ENSG00000091409.107394.053805188.109100.5111019.4411018.03060HepG2SUCLG1
ITGA6ENSG00000091409.104296.328903036.211100.500705.370304.47690HepG2SUPV3L1
ITGA6ENSG00000091409.108289.217403062.176001.4366085.4561082.90580HepG2TAF15
ITGA6ENSG00000091409.103095.805302035.189800.605106.940305.48620HepG2TFIP11
ITGA6ENSG00000091409.104654.311902813.713400.7260016.4383014.45570HepG2TIA1
ITGA6ENSG00000091409.103268.503604074.46770-0.318004.058003.47710HepG2TIAL1
ITGA6ENSG00000091409.105031.650604110.856700.291505.457004.71650HepG2TRIM56
ITGA6ENSG00000091409.107472.858903939.796100.923408.322107.23190HepG2U2AF1
ITGA6ENSG00000091409.1012448.818905345.442701.219504.700203.38950HepG2U2AF2
ITGA6ENSG00000091409.101076.082801793.72230-0.737208.717407.36740HepG2UCHL5
ITGA6ENSG00000091409.10880.718302780.77540-1.6587025.3918022.52990HepG2UPF2
ITGA6ENSG00000091409.104912.983403615.385100.4424012.0963010.98080HepG2UTP3
ITGA6ENSG00000091409.102833.737403812.65130-0.428102.718601.63510HepG2XPO5
ITGA6ENSG00000091409.102152.781002988.81080-0.473403.982903.12080HepG2XRN2
ITGA6ENSG00000091409.1010040.444004118.481601.28550141.00260138.76920HepG2ZNF622
ITGA6ENSG00000091409.1020.279300.0000099999.999905.217304.18760K562PRPF8
ITGA6ENSG00000091409.101.6766023.02450-3.779602.273001.52770K562SF3A3
ITGA6ENSG00000091409.101.6718024.72070-3.886302.524801.83730K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ITGA6 is not available on ENCORE database.





19 RBPs can affect the splicing of ITGA6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733709580.368000.000000.00048includedHepG2G3BP1
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173369262-0.192000.000010.00212excludedHepG2RBM22
SEITGA6ENSG00000091409.10chr2+173354212173354386173352853173352956173355751173355850-0.233000.000000.00000excludedHepG2U2AF1
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173370958-0.110000.000230.03546excludedHepG2HNRNPM
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173370958-0.271000.000020.00397excludedHepG2QKI
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173369262-0.111000.000000.00005excludedHepG2U2AF2
SEITGA6ENSG00000091409.10chr2+173354212173354386173352853173352956173355751173355850-0.105000.000000.00000excludedHepG2U2AF2
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173369262-0.221000.000000.00008excludedHepG2SRSF7
SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733692620.241000.000000.00040includedHepG2UPF1
SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733709580.157000.002450.08206includedHepG2MATR3
SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733692620.227000.000000.00069includedHepG2DDX6
SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733692620.318000.000100.00378includedHepG2SRSF1
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173369262-0.154000.000700.07375excludedHepG2SSB
SEITGA6ENSG00000091409.10chr2+1733664991733666291733627021733628281733688181733692620.221000.001650.09206includedHepG2IGF2BP3
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173369262-0.085000.001130.09742excludedHepG2RBFOX2
SEITGA6ENSG00000091409.10chr2+173366499173366629173362702173362828173368818173369262-0.191000.000220.07242excludedHepG2XRN2
SEITGA6ENSG00000091409.10chr2+173354212173354386173352853173352956173355751173355850-0.104000.000000.00017excludedHepG2HNRNPU
A5SSITGA6ENSG00000091409.10chr2+1733542121733543861733542121733543411733557511733558500.101000.000030.00559longerHepG2SRSF9
A5SSITGA6ENSG00000091409.10chr2+1733542121733543861733542121733543411733557511733558500.088000.000000.00000longerHepG2U2AF2
A5SSITGA6ENSG00000091409.10chr2+1733542121733543861733542121733543411733557511733558500.068000.000740.06146longerHepG2RBM22
A5SSITGA6ENSG00000091409.10chr2+1733542121733543861733542121733543411733557511733558500.093000.000240.02519longerHepG2SF3B4
A5SSITGA6ENSG00000091409.10chr2+173354212173354386173354212173354341173355751173355850-0.152000.000090.00828shorterHepG2SRSF1
A5SSITGA6ENSG00000091409.10chr2+1733542121733543861733542121733543411733557511733558500.059000.000070.00981longerHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ITGA6 is not avaliable on ENCORE database.