ITGA6

General Information

Gene Name : ITGA6
Gene ID : ENSG00000091409.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ITGA6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ITGA6	ENSG00000091409.14	0.05	0.11	0.08	ENCSR000AEF
HepG2	ITGA6	ENSG00000091409.14	36.91	64.85	50.88	ENCSR985KAT
K562	ITGA6	ENSG00000091409.14	0.00	0.01	0.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ITGA6 is not avaliable on ENCORE database.

Proteins bound to RNA

ITGA6 RNA is bound by 18 proteins.

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eCLIP assay for ITGA6 is not avaliable on ENCORE database.

18 proteins are bound to ITGA6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	173292479	173292538	+	5'-UTR,CDS,intron-Distal	4.42600	45.41820	HepG2	DDX3X
chr2	173292417	173292479	+	5'-UTR,intron-Distal	4.53816	41.44620	HepG2	DDX3X
chr2	173292324	173292414	+	5'-UTR,intron-Distal	4.78701	37.31549	HepG2	DDX3X
chr2	173292538	173292591	+	CDS,intron-Distal	3.87398	22.43872	HepG2	DDX3X
chr2	173369229	173369300	+	3'-UTR	4.28016	13.86857	HepG2	LIN28B
chr2	173362748	173362822	+	CDS	4.69361	12.63005	HepG2	LIN28B
chr2	173332289	173332319	+	intron-Proximal	3.96319	11.41721	HepG2	PRPF8
chr2	173339692	173339777	+	CDS	3.24130	9.00189	HepG2	BCLAF1
chr2	173369330	173369406	+	3'-UTR	3.34158	8.08169	HepG2	IGF2BP1
chr2	173369242	173369308	+	3'-UTR	3.31673	7.88283	HepG2	IGF2BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for ITGA6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ITGA6 is not available on ENCORE database.
110 RBPs can affect the levels of ITGA6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ITGA6 is not available on ENCORE database.

110 RBPs can affect the gene expression of ITGA6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ITGA6	ENSG00000091409.10	10040.44400	4118.48160	1.28550	141.00260	138.76920	HepG2	ZNF622
ITGA6	ENSG00000091409.10	7750.56890	3406.80290	1.18580	85.94320	84.15430	HepG2	SRSF1
ITGA6	ENSG00000091409.10	7137.19050	3149.28230	1.18020	85.31880	83.18400	HepG2	ACO1
ITGA6	ENSG00000091409.10	8289.21740	3062.17600	1.43660	85.45610	82.90580	HepG2	TAF15
ITGA6	ENSG00000091409.10	11012.86070	4539.38700	1.27850	79.04020	76.63140	HepG2	CELF1
ITGA6	ENSG00000091409.10	8846.35590	4904.59040	0.85090	62.06370	60.03890	HepG2	PUM1
ITGA6	ENSG00000091409.10	6493.32070	3134.96450	1.05040	57.46290	55.68450	HepG2	PTBP1
ITGA6	ENSG00000091409.10	9262.78010	5166.73780	0.84210	50.01050	48.57620	HepG2	SRFBP1
ITGA6	ENSG00000091409.10	5720.41390	2771.61830	1.04530	47.30050	45.57220	HepG2	SRSF9
ITGA6	ENSG00000091409.10	10199.36730	3327.14540	1.61600	40.34410	38.40050	HepG2	DDX6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 111 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ITGA6 is not available on ENCORE database.

19 RBPs can affect the splicing of ITGA6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ITGA6	ENSG00000091409.10	chr2	+	173366499	173366629	173362702	173362828	173368818	173370958	0.36800	0.00000	0.00048	included	HepG2	G3BP1
SE	ITGA6	ENSG00000091409.10	chr2	+	173354212	173354386	173352853	173352956	173355751	173355850	-0.23300	0.00000	0.00000	excluded	HepG2	U2AF1
SE	ITGA6	ENSG00000091409.10	chr2	+	173366499	173366629	173362702	173362828	173368818	173369262	-0.11100	0.00000	0.00005	excluded	HepG2	U2AF2
SE	ITGA6	ENSG00000091409.10	chr2	+	173354212	173354386	173352853	173352956	173355751	173355850	-0.10500	0.00000	0.00000	excluded	HepG2	U2AF2
SE	ITGA6	ENSG00000091409.10	chr2	+	173366499	173366629	173362702	173362828	173368818	173369262	-0.22100	0.00000	0.00008	excluded	HepG2	SRSF7
SE	ITGA6	ENSG00000091409.10	chr2	+	173366499	173366629	173362702	173362828	173368818	173369262	0.24100	0.00000	0.00040	included	HepG2	UPF1
SE	ITGA6	ENSG00000091409.10	chr2	+	173366499	173366629	173362702	173362828	173368818	173369262	0.22700	0.00000	0.00069	included	HepG2	DDX6
SE	ITGA6	ENSG00000091409.10	chr2	+	173354212	173354386	173352853	173352956	173355751	173355850	-0.10400	0.00000	0.00017	excluded	HepG2	HNRNPU
A5SS	ITGA6	ENSG00000091409.10	chr2	+	173354212	173354386	173354212	173354341	173355751	173355850	0.08800	0.00000	0.00000	longer	HepG2	U2AF2
SE	ITGA6	ENSG00000091409.10	chr2	+	173366499	173366629	173362702	173362828	173368818	173369262	-0.19200	0.00001	0.00212	excluded	HepG2	RBM22

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ITGA6

General Information

Functions

Localization

Domains (AlphaFold: ITGA6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ITGA6 is not avaliable on ENCORE database.

18 proteins are bound to ITGA6 RNA:

eCLIP assay for ITGA6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ITGA6 is not available on ENCORE database.

110 RBPs can affect the gene expression of ITGA6 :

The Knockdown/knockout RNA-Seq assay for ITGA6 is not available on ENCORE database.

19 RBPs can affect the splicing of ITGA6 :

The Knockdown/knockout RNA-Seq assay for ITGA6 is not avaliable on ENCORE database.