PEF1

General Information

Gene Name       : PEF1
Gene ID             : ENSG00000162517.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PEF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PEF1ENSG00000162517.1231.7754.7543.26ENCSR000AEF
HepG2PEF1ENSG00000162517.1246.3642.1844.27ENCSR985KAT
K562PEF1ENSG00000162517.1270.6664.2467.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PEF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PEF1 RNA is bound by 7 proteins.  







eCLIP assay for PEF1 is not avaliable on ENCORE database.





7 proteins are bound to PEF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13209559532095661-3'-UTR,intron-Distal4.3510915.61943K562UPF1
chr13209592532095982-3'-UTR,intron-Distal,intron-Proximal5.8964713.76890K562UPF1
chr13209548532095526-3'-UTR,intron-Distal3.121373.91938K562UPF1
chr13209565232095716-3'-UTR,intron-Distal5.079778.19969HepG2UPF1
chr13209591932095995-3'-UTR,intron-Distal,intron-Proximal4.608445.64948HepG2UPF1
chr13209607332096153-3'-UTR,intron-Distal3.450033.27682HepG2LARP4
chr13209572832095791-3'-UTR,intron-Distal5.646699.47550K562UPF1
chr13209554732095588-3'-UTR,intron-Distal4.671143.54010K562UPF1
chr13209598232096069-3'-UTR,intron-Distal,intron-Proximal4.2567011.39836K562UPF1
chr13209603732096096-3'-UTR,intron-Distal,intron-Proximal4.128764.19989HepG2UPF1
chr13209560132095708-3'-UTR,intron-Distal4.869755.71320HepG2AKAP1
chr13209558432095652-3'-UTR,intron-Distal4.789725.94150HepG2UPF1
chr13209577132095863-3'-UTR,intron-Distal,intron-Proximal3.107338.66768K562YBX3
chr13209580032095857-3'-UTR,intron-Distal,intron-Proximal3.698856.98582K562UPF1
chr13209577432095906-3'-UTR,intron-Distal,intron-Proximal3.268803.27723HepG2AKAP1
chr13209811632098181-CDS,intron-Distal3.006804.34307K562YBX3
chr13210089932100996-CDS,intron-Distal,intron-Proximal3.865923.11282HepG2G3BP1
chr13209808832098095-intron-Distal,intron-Proximal4.812115.17615K562AQR
chr13210397332104143-intron-Distal3.033223.72889HepG2SUGP2
chr13209805032098088-intron-Distal,intron-Proximal5.208596.44303K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PEF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PEF1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of PEF1.  








The Knockdown/knockout RNA-Seq assay for PEF1 is not available on ENCORE database.





73 RBPs can affect the gene expression of PEF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PEF1ENSG00000162517.8949.01800713.997900.410402.354801.48370HepG2ABCF1
PEF1ENSG00000162517.8527.61180637.46010-0.272902.047001.50920HepG2ACO1
PEF1ENSG00000162517.8751.69380637.303900.238101.881401.31860HepG2CKAP4
PEF1ENSG00000162517.8649.48750905.44850-0.479305.265904.43090HepG2CELF1
PEF1ENSG00000162517.8730.62750589.551100.309402.943502.08530HepG2DDX19B
PEF1ENSG00000162517.8592.23070755.53510-0.351302.151301.46110HepG2DDX55
PEF1ENSG00000162517.8772.607201037.69160-0.425602.615702.01530HepG2DDX6
PEF1ENSG00000162517.8860.70990609.872000.496905.870604.95050HepG2DKC1
PEF1ENSG00000162517.8358.42520541.57170-0.595504.896803.36790HepG2EIF2S2
PEF1ENSG00000162517.81430.024301102.255900.375502.326801.73880HepG2EIF4A3
PEF1ENSG00000162517.8616.886801073.29560-0.799006.362605.35050HepG2EIF4B
PEF1ENSG00000162517.8580.59560920.06340-0.664206.570605.34100HepG2EIF4G2
PEF1ENSG00000162517.8778.737801362.24900-0.8068018.7125017.38210HepG2ETF1
PEF1ENSG00000162517.8947.82790622.896700.605506.814405.50610HepG2EWSR1
PEF1ENSG00000162517.8561.951901031.72400-0.876509.643008.43850HepG2G3BP1
PEF1ENSG00000162517.8295.80260578.38120-0.967405.883403.78230HepG2HLTF
PEF1ENSG00000162517.8779.561501044.89850-0.422603.207802.45720HepG2HNRNPK
PEF1ENSG00000162517.8333.53700514.50590-0.625304.254603.48850HepG2HNRNPLL
PEF1ENSG00000162517.8647.456401054.86230-0.704205.502504.04170HepG2KHSRP
PEF1ENSG00000162517.8735.472401118.87230-0.605304.893504.07420HepG2MATR3
PEF1ENSG00000162517.8241.89220456.21610-0.915407.180706.01190HepG2NSUN2
PEF1ENSG00000162517.8734.756101019.79120-0.472903.467102.66420HepG2PABPC4
PEF1ENSG00000162517.8485.12540630.30850-0.377702.884402.09720HepG2PRPF4
PEF1ENSG00000162517.81202.12530921.490200.383403.468602.81130HepG2PUF60
PEF1ENSG00000162517.8824.64260978.23820-0.246402.111201.57940HepG2PUM1
PEF1ENSG00000162517.8523.10880977.50140-0.9020014.2141012.76930HepG2PUM2
PEF1ENSG00000162517.8952.88400649.291900.553308.485907.50800HepG2PUS1
PEF1ENSG00000162517.8812.046301128.76480-0.475103.291602.61830HepG2QKI
PEF1ENSG00000162517.8528.11230411.848600.358602.032301.49840HepG2RPS19
PEF1ENSG00000162517.8433.72390616.47270-0.507302.898101.55780HepG2SART3
PEF1ENSG00000162517.81254.38700647.354900.954309.254007.96330HepG2SF3A3
PEF1ENSG00000162517.8848.762901085.07640-0.354402.022801.50520HepG2SF3B4
PEF1ENSG00000162517.8711.54750883.63870-0.312502.913602.19490HepG2SLBP
PEF1ENSG00000162517.8516.06350631.64280-0.291602.322301.72540HepG2SMN1
PEF1ENSG00000162517.8347.56410566.63530-0.705103.832602.90690HepG2SNRNP70
PEF1ENSG00000162517.8797.488201285.98170-0.6893014.3678013.46340HepG2SRFBP1
PEF1ENSG00000162517.8688.24290822.88560-0.257802.228801.59740HepG2SRSF7
PEF1ENSG00000162517.8456.16340921.30580-1.014109.492508.57690HepG2SRSF9
PEF1ENSG00000162517.81345.278701116.524100.268802.897902.37630HepG2SSB
PEF1ENSG00000162517.8493.40120752.04730-0.608104.526103.69190HepG2SUPV3L1
PEF1ENSG00000162517.8379.783201017.76500-1.4222015.5300014.36350HepG2TAF15
PEF1ENSG00000162517.8336.67950504.02450-0.582104.018702.84390HepG2TFIP11
PEF1ENSG00000162517.8765.65130591.012500.373402.905102.39500HepG2TIAL1
PEF1ENSG00000162517.8381.79020596.25610-0.643207.893107.01870HepG2TRIM56
PEF1ENSG00000162517.8716.88120953.00770-0.410802.141401.41050HepG2UBE2L3
PEF1ENSG00000162517.8344.78490444.20540-0.365502.024901.37510HepG2UCHL5
PEF1ENSG00000162517.8877.55790554.276200.6628010.067109.03800HepG2UTP3
PEF1ENSG00000162517.8385.73840550.12240-0.512102.666601.39810HepG2ZRANB2
PEF1ENSG00000162517.81480.50110962.979700.6204011.7824010.70520K562AGGF1
PEF1ENSG00000162517.81387.725101058.111100.391103.365302.25830K562AKAP8
PEF1ENSG00000162517.81459.999201051.322500.473706.318504.86680K562ATP5C1
PEF1ENSG00000162517.81402.558301078.323900.379204.449103.30070K562DKC1
PEF1ENSG00000162517.8929.805401266.61810-0.446005.911304.91940K562EIF2S2
PEF1ENSG00000162517.8996.00850746.661600.415603.977402.38520K562EWSR1
PEF1ENSG00000162517.8495.77160709.70080-0.517503.615802.30100K562FKBP4
PEF1ENSG00000162517.81168.07090889.566100.392904.477103.73250K562FXR1
PEF1ENSG00000162517.8289.10450560.97780-0.956405.221604.18090K562G3BP2
PEF1ENSG00000162517.81035.770601332.97920-0.363903.344202.16140K562HNRNPA1
PEF1ENSG00000162517.81220.795901476.26140-0.274102.525701.67110K562HNRNPU
PEF1ENSG00000162517.81541.891201113.023000.470102.623701.84790K562HSPD1
PEF1ENSG00000162517.81391.009601063.432900.387303.378902.45680K562KIF1C
PEF1ENSG00000162517.81371.467101017.926300.430003.771702.45200K562MAK16
PEF1ENSG00000162517.81572.435201191.306500.400403.618802.55740K562MBNL1
PEF1ENSG00000162517.8777.364201007.73060-0.374404.281503.29370K562MTPAP
PEF1ENSG00000162517.81127.66580835.015200.433402.430401.61540K562NAA15
PEF1ENSG00000162517.81113.51640730.328500.608402.491301.56570K562PABPN1
PEF1ENSG00000162517.8637.557201199.56180-0.9119011.210809.54440K562PCBP3
PEF1ENSG00000162517.8514.46730920.13400-0.8388012.4943010.84890K562POLR2G
PEF1ENSG00000162517.81401.71170932.231100.588304.166903.13340K562PPIG
PEF1ENSG00000162517.82293.780001850.428000.309802.898202.06310K562PUF60
PEF1ENSG00000162517.81515.663101928.47270-0.347504.043802.87810K562PUM2
PEF1ENSG00000162517.81759.58290993.821100.824108.806907.88650K562PUS1
PEF1ENSG00000162517.81513.42690968.244100.644306.398205.52240K562RBM15
PEF1ENSG00000162517.8675.13630870.45110-0.366602.373601.37760K562NELFE
PEF1ENSG00000162517.81024.42420819.770000.321402.348201.35490K562SAFB
PEF1ENSG00000162517.81103.52590667.915300.724302.609401.45700K562SF1
PEF1ENSG00000162517.8763.49540582.791100.389502.753701.90110K562SF3B4
PEF1ENSG00000162517.8905.486701131.94210-0.322003.732502.66500K562SRPK2
PEF1ENSG00000162517.8570.02710799.28160-0.487703.276202.16500K562SUPV3L1
PEF1ENSG00000162517.81286.17150922.878100.478805.616904.43870K562SYNCRIP
PEF1ENSG00000162517.81352.294401849.09680-0.451404.908403.70670K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PEF1 is not available on ENCORE database.





5 RBPs can affect the splicing of PEF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPEF1ENSG00000162517.8chr1-321008223210112332098840320989153211044132110474-0.312000.000000.00012excludedK562SRSF1
SEPEF1ENSG00000162517.8chr1-321008223210112332098840320989153211044132110474-0.324000.000060.00199excludedK562SF3B4
SEPEF1ENSG00000162517.8chr1-321008223210112332098840320989153211044132110474-0.536000.000000.00000excludedHepG2U2AF1
SEPEF1ENSG00000162517.8chr1-321008223210112332098840320989153211044132110474-0.683000.000000.00000excludedK562U2AF1
SEPEF1ENSG00000162517.8chr1-321008223210112332098697320989153211044132110474-0.312000.000000.00000excludedHepG2SRSF1
SEPEF1ENSG00000162517.8chr1-321008223210112332098840320989153211044132110474-0.416000.000010.00051excludedK562U2AF2
A3SSPEF1ENSG00000162517.8chr1-3209809532098280320980953209823932098759320989150.157000.000000.00000longerK562AQR
A3SSPEF1ENSG00000162517.8chr1-3209638932096591320963893209644332098095320982390.071000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PEF1 is not avaliable on ENCORE database.