GFER

General Information

Gene Name       : GFER
Gene ID             : ENSG00000127554.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GFER)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GFERENSG00000127554.123.0113.398.20ENCSR000AEF
HepG2GFERENSG00000127554.1242.1028.7335.41ENCSR985KAT
K562GFERENSG00000127554.1217.5913.3315.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GFER is not avaliable on ENCORE database.



Proteins bound to RNA
  • GFER RNA is bound by 4 proteins.  







eCLIP assay for GFER is not avaliable on ENCORE database.





4 proteins are bound to GFER RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1620363112036448+3'-UTR5.7305312.32677HepG2UPF1
chr1620368422036904+3'-UTR3.198535.47731HepG2AKAP1
chr1620361332036247+3'-UTR5.5573111.85767HepG2AKAP1
chr1620361232036299+3'-UTR6.0911417.52142HepG2UPF1
chr1620373152037367+3'-UTR4.1327310.12876K562UPF1
chr1620372492037303+3'-UTR6.2836217.37470K562UPF1
chr1620349082034994+3'-UTR,CDS,intron-Distal,intron-Proximal4.284143.81597K562RBM15
chr1620365072036585+3'-UTR4.303578.23922HepG2AKAP1
chr1620364912036566+3'-UTR4.868345.93974HepG2UPF1
chr1620370492037114+3'-UTR5.6335121.87415K562UPF1
chr1620363762036507+3'-UTR4.8265411.61205HepG2AKAP1
chr1620370152037064+3'-UTR3.650295.36498HepG2UPF1
chr1620371142037244+3'-UTR7.4497144.35265K562UPF1
chr1620368272036918+3'-UTR3.953315.09017HepG2UPF1
chr1620368542036912+3'-UTR4.8745911.27586K562UPF1
chr1620367232036783+3'-UTR3.125114.88668HepG2AKAP1
chr1620364332036489+3'-UTR3.471157.32623K562UPF1
chr1620349732035010+3'-UTR,intron-Distal,intron-Proximal4.806134.45472HepG2RBM22
chr1620364242036467+3'-UTR4.044655.20580K562AKAP1
chr1620362982036376+3'-UTR4.313409.26660HepG2AKAP1
chr1620349032034943+CDS,intron-Distal6.0157914.48846K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GFER is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GFER is not available on ENCORE database.

  • 102 RBPs can affect the levels of GFER.  








The Knockdown/knockout RNA-Seq assay for GFER is not available on ENCORE database.





102 RBPs can affect the gene expression of GFER :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GFERENSG00000127554.12197.72340291.42460-0.559602.736901.67000HepG2AATF
GFERENSG00000127554.121009.65300572.992500.817208.094606.59900HepG2ABCF1
GFERENSG00000127554.12357.25030501.99680-0.490703.729603.04410HepG2ACO1
GFERENSG00000127554.12474.47070982.49280-1.0501011.5200010.50690HepG2AKAP1
GFERENSG00000127554.12537.16880812.91870-0.597704.782903.76260HepG2ASCC1
GFERENSG00000127554.12606.26320736.33240-0.280401.992001.39220HepG2AUH
GFERENSG00000127554.121242.33860772.332500.685707.344806.13210HepG2CIRBP
GFERENSG00000127554.12378.87780274.002800.467402.920101.87410HepG2YBX3
GFERENSG00000127554.12569.51900464.224600.294802.299301.53380HepG2DDX19B
GFERENSG00000127554.12514.18440321.318000.678205.512004.58910HepG2DDX21
GFERENSG00000127554.12692.82760430.605000.686006.335104.86350HepG2DDX5
GFERENSG00000127554.12557.58750808.50790-0.536103.477802.79240HepG2DDX6
GFERENSG00000127554.12359.38000259.506800.469602.563301.61950HepG2DHX30
GFERENSG00000127554.12893.62330480.246500.895808.903907.82660HepG2DKC1
GFERENSG00000127554.12347.13030266.668500.380302.368001.75550HepG2DNAJC2
GFERENSG00000127554.12491.37860360.974000.444802.273001.43560HepG2EEF2
GFERENSG00000127554.12464.66460777.18000-0.742106.608305.71560HepG2EIF2S1
GFERENSG00000127554.12207.89620293.01570-0.495102.397201.55140HepG2EIF3D
GFERENSG00000127554.12435.26100303.550000.519803.553102.34820HepG2EIF3G
GFERENSG00000127554.121653.68600858.847000.945109.726808.54190HepG2EIF4A3
GFERENSG00000127554.12405.62570836.26190-1.043809.230208.01280HepG2EIF4B
GFERENSG00000127554.12387.09540578.57310-0.579802.465701.73590HepG2FIP1L1
GFERENSG00000127554.12485.16480651.81000-0.426003.065102.24070HepG2FUBP3
GFERENSG00000127554.12618.82500866.62600-0.485903.509402.73560HepG2FXR1
GFERENSG00000127554.12530.06060803.87780-0.600804.628103.77740HepG2G3BP1
GFERENSG00000127554.12378.84770260.888300.538103.154502.19070HepG2GEMIN5
GFERENSG00000127554.12785.81910463.511600.761506.591905.63190HepG2GPKOW
GFERENSG00000127554.12414.08260271.640600.608104.029603.27150HepG2HNRNPA1
GFERENSG00000127554.12349.85450464.62070-0.409302.566401.66250HepG2HNRNPA2B1
GFERENSG00000127554.12548.08170302.143800.859107.921506.79450HepG2HNRNPC
GFERENSG00000127554.12567.87640442.463000.359903.010602.26480HepG2HNRNPF
GFERENSG00000127554.12579.37500814.10380-0.490703.695302.89730HepG2HNRNPK
GFERENSG00000127554.12352.30380460.47090-0.386302.589101.93590HepG2HNRNPL
GFERENSG00000127554.12634.05170442.340300.519303.432902.74040HepG2HNRNPLL
GFERENSG00000127554.12713.10670435.704400.710707.363206.23490HepG2IGF2BP1
GFERENSG00000127554.12409.63630766.88510-0.904702.955701.93970HepG2IGF2BP3
GFERENSG00000127554.12731.51950539.488300.439202.277201.53040HepG2LARP4
GFERENSG00000127554.121395.44350866.928900.686607.195606.15230HepG2MAGOH
GFERENSG00000127554.12652.74220871.76710-0.417402.427001.83340HepG2MATR3
GFERENSG00000127554.12275.34080393.16780-0.513903.123201.82830HepG2NAA15
GFERENSG00000127554.12642.81790892.29080-0.473102.273401.69690HepG2NCBP2
GFERENSG00000127554.12514.51830256.241501.005606.461104.27950HepG2NOLC1
GFERENSG00000127554.12522.03660392.240500.412302.241101.56530HepG2NSUN2
GFERENSG00000127554.12541.57610842.06330-0.636809.352208.34430HepG2PCBP1
GFERENSG00000127554.12415.87440267.707900.635405.444104.44040HepG2PPIL4
GFERENSG00000127554.12535.60630856.81240-0.6778010.657509.71810HepG2PTBP1
GFERENSG00000127554.121196.10000478.531601.3216021.9230020.45860HepG2PUF60
GFERENSG00000127554.12694.68310511.300200.442104.662503.90340HepG2PUS1
GFERENSG00000127554.12421.73580927.98830-1.1378021.8080020.29740HepG2QKI
GFERENSG00000127554.12538.96650706.59110-0.390703.059802.52290HepG2RBM22
GFERENSG00000127554.12633.10370842.19420-0.411703.374202.63540HepG2RBM25
GFERENSG00000127554.12541.00790306.960700.817506.209204.62150HepG2RCC2
GFERENSG00000127554.12687.63720953.56530-0.471705.615004.88710HepG2NELFE
GFERENSG00000127554.12649.50290888.08870-0.451405.136004.33040HepG2RECQL
GFERENSG00000127554.12695.94740476.571800.546204.464603.62700HepG2RPLP0
GFERENSG00000127554.12488.53740348.626300.486702.812602.00560HepG2RPS2
GFERENSG00000127554.12190.52460303.46680-0.671603.682002.79220HepG2RRP9
GFERENSG00000127554.12387.04930267.297500.534004.144603.38360HepG2SAFB2
GFERENSG00000127554.121106.06190614.408400.848107.789606.61880HepG2SF3A3
GFERENSG00000127554.12600.48100437.812700.455702.873402.15420HepG2SF3B1
GFERENSG00000127554.12551.65680892.08540-0.693407.898506.98100HepG2SF3B4
GFERENSG00000127554.12580.40240458.881700.338802.900902.18390HepG2SLBP
GFERENSG00000127554.12647.45110931.13050-0.524206.804206.14300HepG2SRSF1
GFERENSG00000127554.12564.50000434.689300.376903.293902.54340HepG2SRSF7
GFERENSG00000127554.12425.98980757.51260-0.8305014.3213013.24270HepG2SRSF9
GFERENSG00000127554.121750.67230692.933501.3370055.0359053.46620HepG2SSB
GFERENSG00000127554.12383.44600836.89890-1.1260021.5272020.17070HepG2TAF15
GFERENSG00000127554.12446.52540769.03590-0.7843010.349508.75280HepG2TIA1
GFERENSG00000127554.12836.09000291.671801.5192033.1103031.72680HepG2TIAL1
GFERENSG00000127554.12401.93630294.254100.449803.309102.70470HepG2TRIM56
GFERENSG00000127554.12633.56690467.540500.438303.359102.38870HepG2TUFM
GFERENSG00000127554.12718.30420544.886000.398504.057103.23630HepG2UPF1
GFERENSG00000127554.12549.83200362.562900.600702.362101.44030HepG2UPF2
GFERENSG00000127554.12789.69540526.066600.586007.713006.79360HepG2UTP3
GFERENSG00000127554.12953.90340389.930401.2905016.3314014.59970HepG2XRN2
GFERENSG00000127554.12479.69610345.073800.475104.111003.31640HepG2ZC3H8
GFERENSG00000127554.12897.17750631.132200.507406.211405.41300K562AGGF1
GFERENSG00000127554.12907.64340693.505000.388102.988201.95530K562AKAP8
GFERENSG00000127554.12828.13260656.718200.334502.197901.61380K562AKAP8L
GFERENSG00000127554.121864.22340715.645301.3812032.0800030.28090K562AQR
GFERENSG00000127554.121077.43870629.137300.7761014.9328013.53580K562DDX47
GFERENSG00000127554.12482.53500316.116300.610103.940802.83680K562EFTUD2
GFERENSG00000127554.12433.89090290.191800.580202.424001.48790K562EIF3A
GFERENSG00000127554.12468.61270338.383400.469602.235101.31490K562EIF3D
GFERENSG00000127554.12415.27920222.243200.901808.746107.33350K562EIF3G
GFERENSG00000127554.12607.48840375.337600.694606.595405.33700K562EIF4A3
GFERENSG00000127554.12439.82250327.635300.424702.859801.54450K562EWSR1
GFERENSG00000127554.12496.92970318.711600.640704.896503.74490K562FIP1L1
GFERENSG00000127554.12207.80470308.70640-0.571002.428301.38400K562FKBP4
GFERENSG00000127554.12566.15470390.336300.536404.933504.15850K562FXR1
GFERENSG00000127554.1254.67900159.57540-1.545207.835806.51970K562G3BP2
GFERENSG00000127554.12503.53830316.936100.667804.462802.62000K562GEMIN5
GFERENSG00000127554.121234.29550802.992100.620107.234006.00050K562GRSF1
GFERENSG00000127554.12625.94170355.469600.816208.524907.52840K562HNRNPC
GFERENSG00000127554.12462.58210262.131000.819306.056504.61040K562HNRNPM
GFERENSG00000127554.12796.63080432.124700.882409.984108.50160K562HSPD1
GFERENSG00000127554.12422.05750275.158100.617103.490302.28680K562IGF2BP2
GFERENSG00000127554.12511.42330288.991800.823406.792805.44820K562MAGOH
GFERENSG00000127554.12478.11110311.676700.617203.830202.24720K562NONO
GFERENSG00000127554.12350.23540257.096700.445902.204501.33570K562PCBP2
GFERENSG00000127554.12651.66930361.780800.848908.971407.28290K562PPIG
GFERENSG00000127554.12534.39180307.619600.796706.241305.11410K562PRPF8
GFERENSG00000127554.12454.10860280.787700.693506.188905.22850K562PTBP1
GFERENSG00000127554.121252.76290964.111100.377703.292802.40310K562PUF60
GFERENSG00000127554.12825.55230651.308700.341902.137601.64790K562PUS1
GFERENSG00000127554.12511.83900269.138900.927209.750608.02010K562RBM22
GFERENSG00000127554.12629.70850313.286201.007109.321407.80650K562RPS19
GFERENSG00000127554.12335.42140229.093800.549902.390701.46820K562RPS3
GFERENSG00000127554.12254.90720165.756700.620803.503502.53740K562SF3B4
GFERENSG00000127554.12130.25850204.07650-0.647702.925901.30450K562SND1
GFERENSG00000127554.12549.43750275.286700.9969011.6437010.20170K562SRSF1
GFERENSG00000127554.12378.10290221.101200.774005.311603.76690K562SRSF4
GFERENSG00000127554.12425.91680260.040000.711705.474903.90930K562SRSF5
GFERENSG00000127554.12533.60030278.562500.937709.482108.05090K562TARDBP
GFERENSG00000127554.12479.36280268.717000.834908.168206.65030K562TIA1
GFERENSG00000127554.12392.64420263.799300.573703.650302.36450K562TRA2A
GFERENSG00000127554.12100.50340159.61340-0.667302.677201.88660K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GFER is not available on ENCORE database.






No RBPs affect the alternative splcing events of GFER on ENCORE database.





The Knockdown/knockout RNA-Seq assay for GFER is not avaliable on ENCORE database.