RNF40

General Information

Gene Name       : RNF40
Gene ID             : ENSG00000103549.21
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RNF40)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF40ENSG00000103549.2136.4437.5136.97ENCSR000AEF
HepG2RNF40ENSG00000103549.2165.0878.1171.59ENCSR985KAT
K562RNF40ENSG00000103549.2177.0377.1277.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF40 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF40 RNA is bound by 27 proteins.  







eCLIP assay for RNF40 is not avaliable on ENCORE database.





27 proteins are bound to RNF40 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr163078561330785674+3'-UTR,intron-Proximal3.883225.09017HepG2UPF1
chr163078615630786237+3'-UTR3.828596.42285HepG2AKAP1
chr163078620730786305+3'-UTR3.3106314.87199K562UPF1
chr163078586730785966+3'-UTR5.017436.23478HepG2AKAP1
chr163078552330785613+3'-UTR,intron-Proximal5.3835411.24187HepG2UPF1
chr163078610530786163+3'-UTR3.996503.31982HepG2IGF2BP1
chr163078617030786243+3'-UTR5.035557.69327HepG2UPF1
chr163078611630786200+3'-UTR3.304323.86715K562HNRNPK
chr163078595930786022+3'-UTR4.728799.59522K562PABPC4
chr163078578330785814+3'-UTR4.118795.61622K562UPF1
chr163078576830785833+3'-UTR4.834237.10674HepG2UPF1
chr163078638430786453+3'-UTR3.9880511.60337K562UPF1
chr163078586530785965+3'-UTR4.0765211.91039HepG2UPF1
chr163078632230786403+3'-UTR3.433594.43180HepG2DDX55
chr163078632230786388+3'-UTR3.268383.85730K562AKAP1
chr163078631930786415+3'-UTR4.8569812.57965HepG2UPF1
chr163078562530785675+3'-UTR,intron-Proximal3.688958.64357K562UPF1
chr163078563130785668+3'-UTR,intron-Proximal4.002553.08342HepG2AKAP1
chr163078575330785846+3'-UTR3.388943.68882K562FAM120A
chr163078630530786384+3'-UTR3.6039910.83735K562UPF1
chr163078606830786185+3'-UTR3.347127.76680K562YBX3
chr163078622330786296+3'-UTR3.064603.96176HepG2LIN28B
chr163078586330785911+3'-UTR3.328898.81237K562UPF1
chr163078626530786391+3'-UTR3.759094.27313HepG2PABPN1
chr163078551630785598+3'-UTR,intron-Proximal3.150424.74299HepG2AKAP1
chr163078591130785956+3'-UTR3.585028.33876K562UPF1
chr163078595630786009+3'-UTR5.1638912.56575K562UPF1
chr163078621630786337+3'-UTR4.589069.23000K562LIN28B
chr163078596530786013+3'-UTR4.336283.92497HepG2UPF1
chr163078588730785963+3'-UTR4.487678.09313HepG2PCBP2
chr163078632730786390+3'-UTR4.872327.76785HepG2AKAP1
chr163078577530785829+3'-UTR3.587515.29636HepG2AKAP1
chr163078637830786477+3'-UTR5.1710511.52455K562PABPC4
chr163077371630773857+5'-UTR,intron-Distal,intron-Proximal4.2568417.82763K562BUD13
chr163077373330773850+5'-UTR,intron-Distal,intron-Proximal4.2139114.93802K562AQR
chr163077373330773846+5'-UTR,intron-Distal,intron-Proximal3.097609.37465HepG2PRPF8
chr163077556930775678+5'-UTR,CDS,intron-Distal,intron-Proximal4.1636413.83885K562ZNF622
chr163077366230773728+5'-UTR,intron-Distal,intron-Proximal3.671586.18341HepG2PRPF8
chr163077372530773838+5'-UTR,intron-Distal,intron-Proximal3.6741711.49539K562EFTUD2
chr163077369530773780+5'-UTR,intron-Distal,intron-Proximal4.054679.86309HepG2AQR
chr163077379430773879+5'-UTR,CDS,intron-Distal,intron-Proximal3.790247.97516HepG2GRWD1
chr163078055630780601+CDS4.423587.16955K562UCHL5
chr163078092030780967+CDS,intron-Proximal4.384768.44604HepG2PRPF8
chr163077655830776647+CDS,intron-Distal3.810627.99428K562DDX24
chr163077786530777915+CDS,intron-Distal,intron-Proximal3.576065.13777HepG2PRPF8
chr163077399530774045+CDS,intron-Distal,intron-Proximal4.842339.04436K562AQR
chr163077443830774446+CDS,intron-Distal,intron-Proximal3.347413.05161HepG2PPIG
chr163077443930774459+CDS,intron-Distal3.410254.25142K562BUD13
chr163077452630774603+CDS,intron-Distal,intron-Proximal3.244576.67395K562DDX24
chr163078054330780591+CDS3.384184.31813HepG2G3BP1
chr163077663330776649+CDS,intron-Distal,intron-Proximal3.705184.52024HepG2PPIG
chr163077675030776802+CDS,intron-Distal3.652286.18214HepG2GRWD1
chr163077965330779686+CDS4.601964.35676HepG2PRPF8
chr163077473830774779+CDS,intron-Distal,intron-Proximal3.026083.68893HepG2GRWD1
chr163078019030780305+CDS3.0196213.00505K562ZNF622
chr163078027030780308+CDS3.792207.55042HepG2PPIG
chr163077940930779463+CDS,intron-Proximal3.727758.48964K562SF3B4
chr163077656430776634+CDS,intron-Distal3.211444.08504HepG2G3BP1
chr163077654630776638+CDS,intron-Distal4.118498.89788K562GRWD1
chr163078022430780296+CDS3.327247.42773K562BUD13
chr163077473830774824+CDS,intron-Distal,intron-Proximal3.3549613.13729HepG2PPIG
chr163078523830785286+CDS,intron-Proximal3.507524.10684HepG2AQR
chr163077937430779450+CDS,intron-Proximal4.089816.40042K562EFTUD2
chr163078030730780314+CDS,intron-Proximal5.2518015.34985K562AQR
chr163078017130780212+CDS3.484065.30777HepG2PPIG
chr163078052930780598+CDS3.521637.89598HepG2GRWD1
chr163077564230775673+CDS,intron-Distal3.938423.34184HepG2GRWD1
chr163078066630780726+CDS,intron-Proximal3.9734212.99675K562UCHL5
chr163078083430780885+CDS3.879408.84023K562ZNF622
chr163077473830774837+CDS,intron-Distal,intron-Proximal3.3984310.50393K562ZNF622
chr163077454630774604+CDS,intron-Distal,intron-Proximal3.498566.39282HepG2GRWD1
chr163078311930783194+CDS,intron-Proximal5.118605.17615K562AQR
chr163077948930779529+CDS3.223013.39306HepG2GRWD1
chr163078018030780311+CDS,intron-Proximal3.9288418.27527K562UCHL5
chr163077926630779310+CDS3.581125.31167HepG2GRWD1
chr163078030530780355+CDS,intron-Proximal3.614549.77953HepG2PRPF8
chr163078092030780946+CDS,intron-Proximal4.248069.29543K562AQR
chr163078085930780916+CDS3.328026.45347HepG2GRWD1
chr163078016630780298+CDS3.018357.88526HepG2GRWD1
chr163077455830774607+CDS,intron-Distal,intron-Proximal3.591499.28987K562ZNF622
chr163077932630779337+CDS,intron-Proximal4.900537.31591K562UCHL5
chr163078074530780812+CDS,intron-Proximal5.063165.58150K562SF3B4
chr163077445330774526+CDS,intron-Distal3.720985.21950K562DDX24
chr163078061430780666+CDS3.229666.95218K562UCHL5
chr163077654430776644+CDS,intron-Distal3.6621811.53978K562UCHL5
chr163077744130777517+CDS,intron-Distal,intron-Proximal4.985995.68078HepG2AQR
chr163077650230776586+CDS,intron-Distal4.233604.34615K562LIN28B
chr163077998930780036+CDS5.8330711.40157K562UCHL5
chr163078067230780718+CDS3.841267.52293K562GRWD1
chr163078054730780605+CDS3.314974.37145K562GRWD1
chr163077474030774793+CDS,intron-Distal3.670446.50179HepG2BUD13
chr163077942130779457+CDS,intron-Proximal3.232723.97831K562ZNF800
chr163078083430780917+CDS4.178178.03104HepG2G3BP1
chr163078066030780721+CDS,intron-Proximal3.196316.45823K562ZNF622
chr163077957930779621+CDS3.484783.95682K562PUM1
chr163077668030776753+CDS,intron-Distal,intron-Proximal3.504255.81784K562EFTUD2
chr163077942330779462+CDS,intron-Proximal5.268549.17286K562UCHL5
chr163077998830780030+CDS3.816154.41784HepG2GRWD1
chr163078350330783547+CDS,intron-Proximal4.180265.64484HepG2PRPF8
chr163077800330778078+CDS,intron-Proximal3.630258.27668HepG2EFTUD2
chr163077753630777580+CDS,intron-Distal4.939936.46301HepG2PPIG
chr163077964530779688+CDS4.097326.08299HepG2PPIG
chr163077446630774572+CDS,intron-Distal,intron-Proximal3.185346.13431K562ZNF800
chr163077926430779305+CDS3.473014.25142K562BUD13
chr163077948230779528+CDS3.995615.80295HepG2PPIG
chr163077440730774470+CDS,intron-Distal,intron-Proximal3.637996.28932HepG2AQR
chr163077997230780031+CDS3.199454.56061K562BUD13
chr163077754530777585+CDS,intron-Distal3.238703.79741HepG2GRWD1
chr163077965530779705+CDS4.614896.26332HepG2GRWD1
chr163077996930780055+CDS3.260374.79538HepG2BCLAF1
chr163078063530780672+CDS3.134875.29004K562GRWD1
chr163077650530776544+CDS,intron-Distal3.165074.86973K562UCHL5
chr163077651430776630+CDS,intron-Distal4.6730922.13371K562ZNF622
chr163078065130780720+CDS,intron-Proximal3.453699.04641HepG2PPIG
chr163077655030776626+CDS,intron-Distal3.729597.44807HepG2GRWD1
chr163078062730780704+CDS3.795355.11568K562PUM1
chr163078050330780538+CDS,intron-Proximal4.097284.37331K562GRWD1
chr163078021230780270+CDS3.401527.16988HepG2PPIG
chr163077492430774956+intron-Distal,intron-Proximal4.042723.56076K562BUD13
chr163077374130773788+intron-Distal,intron-Proximal4.536799.43690HepG2BUD13
chr163077488030774965+intron-Distal,intron-Proximal6.4309818.62356K562AQR
chr163078255830782638+intron-Distal3.212084.63569HepG2RBFOX2
chr163077668530776741+intron-Distal,intron-Proximal4.154166.11702K562SF3B4
chr163077571430775778+intron-Distal,intron-Proximal5.221837.28294K562AQR
chr163077374330773796+intron-Distal,intron-Proximal4.193166.11702K562SF3B4
chr163077823030778276+intron-Proximal4.419623.89565K562PRPF8
chr163077824230778261+intron-Proximal4.117363.87995K562UCHL5
chr163078094630780964+intron-Proximal3.468658.72467K562AQR
chr163077988630779933+intron-Proximal3.845474.22551K562SF3B4
chr163078092430780984+intron-Proximal4.458623.89565K562PRPF8
chr163078351130783551+intron-Proximal3.895794.00320K562AQR
chr163078072730780795+intron-Proximal4.555595.86025HepG2SF3B4
chr163078031430780351+intron-Proximal4.8748816.50383K562AQR
chr163078330230783341+intron-Proximal4.572514.35676HepG2PRPF8
chr163077936930779409+intron-Proximal4.320457.08280K562SF3B4
chr163078095030780990+intron-Proximal3.494304.81289HepG2RBM22
chr163078043230780476+intron-Proximal4.127143.02181K562PRPF8
chr163077819830778286+intron-Proximal3.639887.64390K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF40 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF40 is not available on ENCORE database.

  • 100 RBPs can affect the levels of RNF40.  








The Knockdown/knockout RNA-Seq assay for RNF40 is not available on ENCORE database.





100 RBPs can affect the gene expression of RNF40 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF40ENSG00000103549.173434.828202359.129600.541903.844203.23220HepG2AKAP1
RNF40ENSG00000103549.173120.286302381.100800.389904.028103.32140HepG2BOP1
RNF40ENSG00000103549.172756.589601854.424900.571806.473705.32530HepG2CIRBP
RNF40ENSG00000103549.173086.341402181.877100.5002014.8792013.59230HepG2CKAP4
RNF40ENSG00000103549.171801.499601212.449600.571203.440102.58040HepG2CNOT7
RNF40ENSG00000103549.172683.490302115.084500.343307.702206.55400HepG2DAZAP1
RNF40ENSG00000103549.172469.833402018.293700.291204.850803.78760HepG2DDX19B
RNF40ENSG00000103549.171700.235101388.485900.292102.279601.65610HepG2DDX21
RNF40ENSG00000103549.173005.254802259.552400.411402.930102.28860HepG2DDX3X
RNF40ENSG00000103549.171600.342801340.090200.256002.527201.85040HepG2DNAJC21
RNF40ENSG00000103549.171627.892101328.338800.293304.291203.51200HepG2DNAJC2
RNF40ENSG00000103549.172271.836001613.683500.493404.840503.65250HepG2EEF2
RNF40ENSG00000103549.171733.364001345.086600.365802.809701.69250HepG2EFTUD2
RNF40ENSG00000103549.17863.689701279.23480-0.566704.129802.76360HepG2AGO1
RNF40ENSG00000103549.172400.047201865.909400.363102.715702.12850HepG2EIF2S1
RNF40ENSG00000103549.173016.957402061.692800.549204.894004.04720HepG2EIF4A3
RNF40ENSG00000103549.172638.083902008.027600.393602.267701.64100HepG2EIF4B
RNF40ENSG00000103549.172406.098802086.950600.205202.652101.82930HepG2EIF4G1
RNF40ENSG00000103549.172819.826402132.534000.402904.770703.67920HepG2EWSR1
RNF40ENSG00000103549.172083.428001599.442900.381303.633002.73900HepG2FUBP3
RNF40ENSG00000103549.172991.741302081.240200.523405.025804.11450HepG2FXR1
RNF40ENSG00000103549.171453.757701166.227900.317802.145601.36230HepG2GEMIN5
RNF40ENSG00000103549.173089.547102477.885400.318202.188901.61600HepG2GPKOW
RNF40ENSG00000103549.171708.337601352.929600.336402.891902.23180HepG2HNRNPA1
RNF40ENSG00000103549.171469.010201943.98560-0.404203.532602.49480HepG2HNRNPA2B1
RNF40ENSG00000103549.172146.306501504.911300.512104.408603.54810HepG2HNRNPC
RNF40ENSG00000103549.172222.473101926.578000.206003.135002.42030HepG2HNRNPL
RNF40ENSG00000103549.171774.346702364.69770-0.414403.752903.02960HepG2HNRNPLL
RNF40ENSG00000103549.172440.202101975.430400.304702.919201.94320HepG2HNRNPM
RNF40ENSG00000103549.171906.645701494.959700.350805.501304.66860HepG2HNRNPU
RNF40ENSG00000103549.171821.918201527.047200.254603.802902.95660HepG2ILF2
RNF40ENSG00000103549.174229.140103173.500400.414202.889102.04030HepG2LARP4
RNF40ENSG00000103549.172707.852002081.971600.379102.942702.26730HepG2MAGOH
RNF40ENSG00000103549.174019.926802093.448700.9412013.9987012.65950HepG2MATR3
RNF40ENSG00000103549.172863.513002142.618500.418302.606901.99060HepG2NCBP2
RNF40ENSG00000103549.172556.961301974.952700.372506.461605.59440HepG2PCBP1
RNF40ENSG00000103549.171610.196901333.379800.272002.762602.02610HepG2PPIL4
RNF40ENSG00000103549.172310.467701917.315100.269003.520702.65750HepG2PRPF4
RNF40ENSG00000103549.172125.148601476.974800.524803.268901.95450HepG2PRPF6
RNF40ENSG00000103549.171809.599001289.692400.488503.735102.81360HepG2PRPF8
RNF40ENSG00000103549.172307.785302009.587900.199502.036301.55450HepG2PTBP1
RNF40ENSG00000103549.172375.317402002.179700.246402.162201.62690HepG2PUF60
RNF40ENSG00000103549.172711.704602125.511300.351308.655107.72970HepG2PUM1
RNF40ENSG00000103549.171898.908002222.73770-0.227202.937502.30750HepG2PUS1
RNF40ENSG00000103549.172553.420802176.434000.230401.840401.31540HepG2QKI
RNF40ENSG00000103549.172034.386301355.428500.585702.429201.76550HepG2RAVER1
RNF40ENSG00000103549.173211.479002757.568500.219702.520302.01970HepG2RBM22
RNF40ENSG00000103549.172398.302001975.253500.279902.504601.85950HepG2RBM25
RNF40ENSG00000103549.173032.480202236.478700.439208.878008.00990HepG2NELFE
RNF40ENSG00000103549.172444.875902082.975500.231002.789602.17080HepG2RECQL
RNF40ENSG00000103549.174695.358502805.634800.7428014.0236012.70770HepG2RPLP0
RNF40ENSG00000103549.171785.198601274.645800.485905.756504.90720HepG2RPS19
RNF40ENSG00000103549.172066.876401537.172200.427103.521402.62040HepG2RPS2
RNF40ENSG00000103549.175036.095802980.068700.756907.584806.43310HepG2SF3A3
RNF40ENSG00000103549.172572.057402092.240900.297804.266203.55660HepG2SF3B4
RNF40ENSG00000103549.172447.376801920.002300.350005.359404.43740HepG2SLBP
RNF40ENSG00000103549.172107.691001552.507300.4410010.479109.35820HepG2SMN1
RNF40ENSG00000103549.171670.271202604.28090-0.640804.672603.64610HepG2SNRNP70
RNF40ENSG00000103549.173509.739103114.539100.172202.129001.67140HepG2SRFBP1
RNF40ENSG00000103549.173088.270302183.846400.4998012.3794011.53320HepG2SRSF1
RNF40ENSG00000103549.172634.859301976.991600.414308.590407.56520HepG2SRSF5
RNF40ENSG00000103549.172034.317001776.675200.195302.164401.66390HepG2SRSF9
RNF40ENSG00000103549.173290.468302704.099500.283004.606103.97830HepG2SSB
RNF40ENSG00000103549.171505.233001060.011800.505803.539202.28120HepG2STIP1
RNF40ENSG00000103549.173434.213202248.272100.611109.694808.65110HepG2SUCLG1
RNF40ENSG00000103549.171299.727501962.92570-0.5948010.927509.92970HepG2TAF15
RNF40ENSG00000103549.172457.716601452.530400.7587016.6861015.64510HepG2TIAL1
RNF40ENSG00000103549.171943.558301465.624700.407107.183506.34860HepG2TRIM56
RNF40ENSG00000103549.172763.677701956.223000.498407.595406.03840HepG2TUFM
RNF40ENSG00000103549.173016.789702449.217100.300602.381601.79490HepG2U2AF1
RNF40ENSG00000103549.173823.360102551.580900.5833018.3765017.04060HepG2UTP3
RNF40ENSG00000103549.171477.705401091.236600.437302.563701.51650HepG2XPO5
RNF40ENSG00000103549.173325.658904113.34290-0.306702.663201.47190K562ABCF1
RNF40ENSG00000103549.172219.078803072.59090-0.4695010.764609.73870K562AGGF1
RNF40ENSG00000103549.172524.692703197.11970-0.340703.443502.71240K562AKAP8L
RNF40ENSG00000103549.174934.291006037.95830-0.291203.547602.44010K562CELF1
RNF40ENSG00000103549.175066.078304038.378200.327006.183705.26380K562DDX47
RNF40ENSG00000103549.172630.537903440.64600-0.387306.727805.26620K562DKC1
RNF40ENSG00000103549.172878.229601979.558000.539904.006102.43420K562EEF2
RNF40ENSG00000103549.173668.416501912.387000.9397017.6180015.13090K562EFTUD2
RNF40ENSG00000103549.172303.419501896.736100.280203.562602.17090K562EIF2S1
RNF40ENSG00000103549.173422.460702047.157200.741303.311102.17310K562EIF3D
RNF40ENSG00000103549.171777.787501040.282700.7730016.5729014.55480K562EIF3G
RNF40ENSG00000103549.172679.729801804.139600.570707.820806.44170K562EIF4A3
RNF40ENSG00000103549.171406.559201883.65010-0.421403.435502.16210K562FKBP4
RNF40ENSG00000103549.173172.400301876.222100.7576021.9504020.36080K562FXR1
RNF40ENSG00000103549.17266.35080752.53710-1.4984010.052508.54510K562G3BP2
RNF40ENSG00000103549.172720.835802169.047700.326903.330702.68370K562HNRNPC
RNF40ENSG00000103549.173044.576304008.81890-0.396904.107303.14430K562HSPD1
RNF40ENSG00000103549.172071.140101405.368400.559402.975701.90030K562IGF2BP2
RNF40ENSG00000103549.172533.914703393.11980-0.421204.854503.70450K562KIF1C
RNF40ENSG00000103549.171267.356001645.49510-0.376702.226801.39860K562KRR1
RNF40ENSG00000103549.172480.822401475.654900.749408.498706.98560K562MAGOH
RNF40ENSG00000103549.172209.762101472.458700.585604.765303.51990K562MATR3
RNF40ENSG00000103549.171903.869802664.29890-0.484803.634502.59070K562NAA15
RNF40ENSG00000103549.173386.874703893.75230-0.201203.989503.11210K562NSUN2
RNF40ENSG00000103549.173321.520902748.477700.273102.767401.96540K562POLR2G
RNF40ENSG00000103549.173395.214901860.983700.8673015.1231013.35510K562PRPF8
RNF40ENSG00000103549.172067.869801433.790700.528203.433002.70250K562PTBP1
RNF40ENSG00000103549.174617.386405698.93850-0.303603.723102.46900K562PUM1
RNF40ENSG00000103549.171362.044303171.02640-1.2192028.8208027.04880K562PUS1
RNF40ENSG00000103549.171875.908601374.106400.449002.526201.72630K562RBM22
RNF40ENSG00000103549.171910.403501340.048500.511503.640201.97650K562RBM34
RNF40ENSG00000103549.172076.617501446.197400.521902.982601.84360K562NELFE
RNF40ENSG00000103549.172938.269701895.309400.632406.488105.22660K562RPS19
RNF40ENSG00000103549.172051.300201322.499000.633205.979604.44020K562RPS3
RNF40ENSG00000103549.173278.087302448.945600.420605.198403.71200K562SAFB
RNF40ENSG00000103549.173451.029002531.932100.446704.896802.95440K562SDAD1
RNF40ENSG00000103549.171088.50950781.927200.477105.230204.03200K562SF3B4
RNF40ENSG00000103549.172640.592001405.742400.9094010.281208.93130K562SRSF1
RNF40ENSG00000103549.171634.467101276.524500.356502.917001.82640K562SRSF4
RNF40ENSG00000103549.17845.100401073.07570-0.344603.213801.81170K562SSB
RNF40ENSG00000103549.172977.696603879.53300-0.381703.771002.16360K562SSRP1
RNF40ENSG00000103549.173417.414802756.788400.309803.577202.64430K562SYNCRIP
RNF40ENSG00000103549.17473.00610738.65540-0.643002.792201.31990K562TAF15
RNF40ENSG00000103549.172389.272501422.380900.748205.676804.64230K562TARDBP
RNF40ENSG00000103549.172039.321601372.131600.571604.565803.47670K562TIA1
RNF40ENSG00000103549.171983.380301347.232000.557903.078201.91480K562TRA2A
RNF40ENSG00000103549.174116.361903673.639600.164102.188501.42880K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF40 is not available on ENCORE database.





10 RBPs can affect the splicing of RNF40 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF40ENSG00000103549.17chr16+307774833077760330776745307768203077769930777879-0.098000.000830.03263excludedK562PRPF8
SERNF40ENSG00000103549.17chr16+307774833077760330776745307768203077769930777879-0.055000.000350.00838excludedHepG2U2AF1
SERNF40ENSG00000103549.17chr16+307774833077760330776745307768203077769930777879-0.059000.000040.00079excludedK562AQR
SERNF40ENSG00000103549.17chr16+307774833077760330776745307768203077769930777879-0.142000.000020.00218excludedK562EFTUD2
A3SSRNF40ENSG00000103549.17chr16+3078041630780543307805063078054330780158307803080.123000.000000.00000longerK562AQR
RIRNF40ENSG00000103549.17chr16+3078050630780921307805063078071930780795307809210.124000.000000.00000includedK562PUS1
RIRNF40ENSG00000103549.17chr16+3078050630780921307805063078071930780795307809210.086000.000070.00483includedK562SF3B1
RIRNF40ENSG00000103549.17chr16+3078050630780921307805063078071930780795307809210.114000.000000.00000includedK562BUD13
RIRNF40ENSG00000103549.17chr16+3078050630780921307805063078071930780795307809210.063000.000000.00013includedHepG2KHSRP
RIRNF40ENSG00000103549.17chr16+3078050630780921307805063078071930780795307809210.051000.000130.00159includedHepG2SF3B4
RIRNF40ENSG00000103549.17chr16+3078050630780921307805063078071930780795307809210.074000.000000.00000includedK562AQR
MXERNF40ENSG00000103549.17chr16+3078050630780719307807953078092130780158307803083078315330783294-0.137000.000460.068452includedK562MATR3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF40 is not avaliable on ENCORE database.