TBX3

General Information

Gene Name       : TBX3
Gene ID             : ENSG00000135111.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBX3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBX3ENSG00000135111.150.000.000.00ENCSR000AEF
HepG2TBX3ENSG00000135111.1525.5438.4632.00ENCSR985KAT
K562TBX3ENSG00000135111.150.250.280.27ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBX3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBX3 RNA is bound by 18 proteins.  







eCLIP assay for TBX3 is not avaliable on ENCORE database.





18 proteins are bound to TBX3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12115109472115109549-3'-UTR,intron-Distal4.239963.35877HepG2UPF1
chr12115108675115108720-3'-UTR,intron-Distal4.855125.08199HepG2FUBP3
chr12115109004115109070-3'-UTR,intron-Distal4.9067610.81031HepG2FUBP3
chr12115108258115108308-3'-UTR,intron-Distal3.898854.34279HepG2FUBP3
chr12115108529115108598-3'-UTR,intron-Distal3.188055.63012HepG2LSM11
chr12115108557115108649-3'-UTR,intron-Distal4.2523310.77990HepG2FUBP3
chr12115121556115121595-5'-UTR,intron-Distal5.308116.07158HepG2DDX6
chr12115121807115121847-5'-UTR,intron-Distal3.596317.43270HepG2PCBP2
chr12115121538115121585-5'-UTR,intron-Distal4.191719.09685HepG2RBM15
chr12115121538115121593-5'-UTR,intron-Distal3.719795.66290HepG2EIF3H
chr12115121847115121886-5'-UTR,intron-Distal3.972676.21080HepG2PCBP2
chr12115121585115121599-5'-UTR,intron-Distal3.805004.66813HepG2RBM15
chr12115110046115110165-CDS,intron-Distal4.528438.99007HepG2AQR
chr12115114067115114121-CDS,intron-Distal,intron-Proximal3.563445.99700HepG2AQR
chr12115114122115114265-CDS,intron-Distal3.236927.47194HepG2GRWD1
chr12115117401115117482-CDS,intron-Distal,intron-Proximal3.3250111.87851HepG2U2AF2
chr12115109842115109945-CDS,intron-Distal3.432397.30054HepG2RPS3
chr12115111924115112065-CDS,intron-Distal,intron-Proximal3.405875.70176HepG2AQR
chr12115114107115114143-CDS,intron-Distal,intron-Proximal3.351513.95099HepG2PRPF8
chr12115114100115114188-CDS,intron-Distal,intron-Proximal3.836558.28719HepG2BUD13
chr12115117441115117542-CDS,intron-Distal,intron-Proximal4.430473.25089HepG2AQR
chr12115114244115114274-CDS,intron-Distal4.305353.45943HepG2BCLAF1
chr12115115439115115481-CDS,intron-Distal,intron-Proximal4.009674.50744HepG2U2AF2
chr12115115380115115458-CDS,intron-Distal,intron-Proximal4.482178.85766HepG2BCLAF1
chr12115114253115114322-CDS,intron-Distal,intron-Proximal3.309517.99874HepG2BUD13
chr12115117298115117388-CDS,intron-Distal,intron-Proximal3.820528.25092HepG2BCLAF1
chr12115112449115112493-CDS,intron-Distal4.119386.29084HepG2RBM15
chr12115118569115118653-intron-Distal,intron-Proximal3.2059810.09988HepG2RBM22
chr12115118589115118659-intron-Distal,intron-Proximal3.814115.42009HepG2EFTUD2
chr12115117502115117539-intron-Distal,intron-Proximal3.964333.00258HepG2RBM5
chr12115120582115120608-intron-Distal4.193095.90868HepG2PRPF8
chr12115120608115120617-intron-Distal3.638835.65303HepG2PRPF8
chr12115114053115114107-intron-Distal,intron-Proximal3.450554.46036HepG2PRPF8
chr12115117480115117533-intron-Distal,intron-Proximal4.065504.07325HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBX3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBX3 is not available on ENCORE database.

  • 92 RBPs can affect the levels of TBX3.  








The Knockdown/knockout RNA-Seq assay for TBX3 is not available on ENCORE database.





92 RBPs can affect the gene expression of TBX3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBX3ENSG00000135111.102044.876901415.325900.530806.397904.83840HepG2AATF
TBX3ENSG00000135111.102925.300902066.238100.5015013.1876012.06620HepG2ACO1
TBX3ENSG00000135111.102026.845301450.224900.482904.405303.42400HepG2ASCC1
TBX3ENSG00000135111.103758.946002962.286900.343506.466405.48620HepG2AUH
TBX3ENSG00000135111.101137.312701663.35990-0.548504.186103.03500HepG2BCCIP
TBX3ENSG00000135111.101030.804501445.38770-0.487703.726502.69560HepG2BCLAF1
TBX3ENSG00000135111.101935.191302992.12440-0.628704.149903.43350HepG2BOP1
TBX3ENSG00000135111.101780.278502264.46950-0.347103.926003.03040HepG2CALR
TBX3ENSG00000135111.101762.391002747.03390-0.640303.750302.96260HepG2CPSF6
TBX3ENSG00000135111.101312.125701733.74340-0.402003.703002.52400HepG2YBX3
TBX3ENSG00000135111.103269.039502357.850900.471309.642008.57980HepG2CELF1
TBX3ENSG00000135111.101916.799302535.24580-0.403408.971607.75670HepG2DAZAP1
TBX3ENSG00000135111.101552.055501911.05100-0.300204.696903.64780HepG2DDX19B
TBX3ENSG00000135111.101127.085201562.11330-0.470904.978904.09620HepG2DDX21
TBX3ENSG00000135111.101199.527201678.93190-0.485104.158503.40470HepG2DDX3X
TBX3ENSG00000135111.102930.339403938.28770-0.426504.905303.21110HepG2DDX47
TBX3ENSG00000135111.105145.678503119.425500.722004.818103.54120HepG2DDX59
TBX3ENSG00000135111.101500.711502149.06280-0.518105.591104.20170HepG2DDX5
TBX3ENSG00000135111.102657.665801442.425800.8816011.4670010.31080HepG2DDX6
TBX3ENSG00000135111.101122.266601641.86700-0.548906.293904.85910HepG2DHX30
TBX3ENSG00000135111.101334.672201976.87310-0.5667011.8944010.69300HepG2DKC1
TBX3ENSG00000135111.101184.001801702.24210-0.523806.060405.05160HepG2DNAJC21
TBX3ENSG00000135111.102517.543601564.557900.686208.840607.31490HepG2EIF3D
TBX3ENSG00000135111.10985.333801532.10170-0.636805.853304.92510HepG2EIF4A3
TBX3ENSG00000135111.102212.114901491.888800.568204.119303.28830HepG2EIF4B
TBX3ENSG00000135111.101837.719802395.98140-0.382703.477102.57170HepG2EIF4G2
TBX3ENSG00000135111.101688.615902283.97200-0.435704.288602.95780HepG2ESF1
TBX3ENSG00000135111.102543.882103401.13310-0.419008.807007.83600HepG2ETF1
TBX3ENSG00000135111.101544.681902019.23200-0.386504.104803.08850HepG2EWSR1
TBX3ENSG00000135111.101812.921301398.328200.374504.257002.77840HepG2FAM120A
TBX3ENSG00000135111.105060.676202662.287300.9266014.4707012.93800HepG2FIP1L1
TBX3ENSG00000135111.101316.415202751.53290-1.063606.081804.57950HepG2FTO
TBX3ENSG00000135111.101420.517901064.349100.416303.683602.78550HepG2FUBP3
TBX3ENSG00000135111.102906.376602053.692900.500903.318702.09310HepG2FUS
TBX3ENSG00000135111.102334.161801546.100300.594206.506205.46920HepG2FXR1
TBX3ENSG00000135111.101596.472003114.25290-0.964007.355906.34220HepG2GPKOW
TBX3ENSG00000135111.102470.759101972.767100.324605.121603.83400HepG2HDGF
TBX3ENSG00000135111.101203.280401718.55260-0.514204.868804.04420HepG2HNRNPA1
TBX3ENSG00000135111.102707.227002329.974500.216402.493601.60000HepG2HNRNPA2B1
TBX3ENSG00000135111.102425.950003172.82380-0.387206.792405.73550HepG2HNRNPF
TBX3ENSG00000135111.102364.615101452.483200.7030010.020708.76180HepG2HNRNPK
TBX3ENSG00000135111.101343.240002971.96390-1.145709.331308.25220HepG2HNRNPLL
TBX3ENSG00000135111.102233.987203124.35250-0.483906.979605.87430HepG2IGF2BP1
TBX3ENSG00000135111.101489.886402309.32210-0.632304.740902.99080HepG2ILF3
TBX3ENSG00000135111.101561.763402256.16930-0.530704.193502.67210HepG2KHDRBS1
TBX3ENSG00000135111.103355.199902429.472400.465703.244601.88920HepG2KRR1
TBX3ENSG00000135111.102224.936001670.203900.413604.365902.93720HepG2LARP7
TBX3ENSG00000135111.101159.405001753.88050-0.597207.019505.14770HepG2LIN28B
TBX3ENSG00000135111.103027.449901637.450200.886608.770307.01040HepG2METAP2
TBX3ENSG00000135111.101923.091403030.41380-0.656104.273303.05530HepG2MTPAP
TBX3ENSG00000135111.102509.645301501.568600.740904.748803.29640HepG2NONO
TBX3ENSG00000135111.101445.946302635.01400-0.865805.971504.89900HepG2NSUN2
TBX3ENSG00000135111.102895.005801879.592500.6230016.8175015.04750HepG2PARN
TBX3ENSG00000135111.101153.250801693.74840-0.554506.101605.03890HepG2PPIL4
TBX3ENSG00000135111.102605.050101472.138200.8233027.3318025.95840HepG2PTBP1
TBX3ENSG00000135111.101112.937202399.78750-1.1085027.0029025.40060HepG2PUF60
TBX3ENSG00000135111.103215.160502547.487600.335707.763406.87430HepG2PUM1
TBX3ENSG00000135111.101848.459201594.127800.213501.926801.39080HepG2QKI
TBX3ENSG00000135111.105053.272303158.345800.6779015.7271013.95630HepG2RBM15
TBX3ENSG00000135111.103352.927002842.711400.238102.769802.25180HepG2RBM22
TBX3ENSG00000135111.101831.277201525.979500.263003.201502.54480HepG2RECQL
TBX3ENSG00000135111.101300.854001842.83330-0.502502.992502.01210HepG2RPS10
TBX3ENSG00000135111.102836.153601522.390700.8975020.1844018.76060HepG2RPS19
TBX3ENSG00000135111.101394.736802377.72890-0.769607.392106.09850HepG2RPS3A
TBX3ENSG00000135111.101704.395101248.141700.449403.561202.68420HepG2RRP9
TBX3ENSG00000135111.101272.617901691.10280-0.410203.683802.95940HepG2SAFB2
TBX3ENSG00000135111.101662.991302239.07700-0.429102.943401.59280HepG2SART3
TBX3ENSG00000135111.101196.180302941.81640-1.2983010.792009.48370HepG2SF3B1
TBX3ENSG00000135111.101706.490802301.03690-0.431309.641308.45690HepG2SLBP
TBX3ENSG00000135111.102300.178601972.033000.222002.163001.58300HepG2SMN1
TBX3ENSG00000135111.102514.510601912.241700.394902.305801.44030HepG2SMNDC1
TBX3ENSG00000135111.104008.823303210.726300.320206.426905.74990HepG2SRFBP1
TBX3ENSG00000135111.101810.112701599.667000.178201.736001.33700HepG2SRSF1
TBX3ENSG00000135111.102902.679302369.449200.292704.478003.71600HepG2SRSF5
TBX3ENSG00000135111.102180.361701301.483600.7443023.3372022.02470HepG2SRSF9
TBX3ENSG00000135111.101126.014101778.31430-0.659305.476403.79790HepG2STAU1
TBX3ENSG00000135111.103392.063502694.709100.331907.108006.19140HepG2SUCLG1
TBX3ENSG00000135111.101127.506901797.78190-0.6731010.191808.49160HepG2SUPT6H
TBX3ENSG00000135111.101219.193301628.06170-0.417202.752202.07700HepG2SUPV3L1
TBX3ENSG00000135111.102018.274302896.01310-0.520903.103102.34130HepG2TARDBP
TBX3ENSG00000135111.101393.577301091.262000.352702.501401.54760HepG2TFIP11
TBX3ENSG00000135111.101590.405901321.150200.267502.384801.60640HepG2TIA1
TBX3ENSG00000135111.101397.092001844.94290-0.401104.233103.64270HepG2TIAL1
TBX3ENSG00000135111.103096.586902277.465500.443104.567303.77050HepG2U2AF1
TBX3ENSG00000135111.101531.94370961.779000.671507.780706.50870HepG2UCHL5
TBX3ENSG00000135111.101220.909502129.67520-0.802707.604405.78700HepG2XPO5
TBX3ENSG00000135111.102813.204401844.812200.608604.635002.98700HepG2XRCC5
TBX3ENSG00000135111.10950.147501602.64680-0.754208.657007.39100HepG2XRN2
TBX3ENSG00000135111.101983.111002362.01360-0.252303.819703.05250HepG2ZC3H8
TBX3ENSG00000135111.1051.0850020.525101.315402.324901.78000K562AQR
TBX3ENSG00000135111.1040.3041015.675501.362302.293801.56450K562POLR2G
TBX3ENSG00000135111.1031.172509.607601.697902.084101.42930K562PRPF8
TBX3ENSG00000135111.1043.0486016.872001.351202.162301.31380K562SF3B1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBX3 is not available on ENCORE database.





19 RBPs can affect the splicing of TBX3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.282000.000000.00000includedHepG2G3BP1
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.278000.000000.00001includedHepG2HNRNPK
SETBX3ENSG00000135111.10chr12-115117717115117777115117309115117456115118683115118951-0.470000.000000.00000excludedHepG2U2AF2
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.199000.000010.00195includedHepG2AKAP1
SETBX3ENSG00000135111.10chr12-115117717115117777115117309115117456115118683115118951-0.110000.000640.05792excludedHepG2SRSF7
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.327000.000000.00008includedHepG2UCHL5
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.220000.000040.01248includedHepG2TIA1
SETBX3ENSG00000135111.10chr12-115117717115117777115117309115117456115118683115118951-0.250000.000020.00201excludedHepG2SFPQ
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.296000.000000.00000includedHepG2MATR3
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.253000.000000.00000includedHepG2DDX6
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.169000.000000.00021includedHepG2RBM15
SETBX3ENSG00000135111.10chr12-115117717115117777115117309115117456115118683115118951-0.252000.000000.00128excludedHepG2HNRNPUL1
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.399000.000000.00000includedHepG2SRSF1
SETBX3ENSG00000135111.10chr12-1151190771151193151151186831151189511151206161151219690.055000.000420.01533includedHepG2SF3A3
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.230000.000000.00045includedHepG2IGF2BP3
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.168000.000190.01921includedHepG2TIAL1
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.282000.000000.00000includedHepG2EIF3D
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.182000.000200.04930includedHepG2FUS
SETBX3ENSG00000135111.10chr12-1151177171151177771151173091151174561151186831151189510.280000.000000.00001includedHepG2KHSRP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBX3 is not avaliable on ENCORE database.