VSNL1

General Information

Gene Name       : VSNL1
Gene ID             : ENSG00000163032.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VSNL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VSNL1ENSG00000163032.110.130.060.10ENCSR000AEF
HepG2VSNL1ENSG00000163032.1175.2383.9779.60ENCSR985KAT
K562VSNL1ENSG00000163032.110.000.030.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VSNL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VSNL1 RNA is bound by 17 proteins.  







eCLIP assay for VSNL1 is not avaliable on ENCORE database.





17 proteins are bound to VSNL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr21783701017837063+3'-UTR3.590686.66729HepG2DDX55
chr21783700617837123+3'-UTR3.556507.50798HepG2ZC3H11A
chr21783668117836788+3'-UTR4.4927533.14967HepG2HNRNPL
chr21783700217837056+3'-UTR3.211013.96118HepG2LARP4
chr21783705617837134+3'-UTR4.214225.47244HepG2LARP4
chr21783706317837134+3'-UTR3.859517.77645HepG2DDX55
chr21783675817836853+3'-UTR3.866463.61326HepG2AGGF1
chr21772196217722027+5'-UTR,intron-Distal3.268076.01904HepG2NCBP2
chr21772215817722213+5'-UTR,intron-Distal,intron-Proximal4.153015.93840HepG2PRPF8
chr21772255717722628+5'-UTR,intron-Distal3.829443.05155HepG2TAF15
chr21772230417722458+5'-UTR,intron-Distal5.442409.88285HepG2RBFOX2
chr21772214017722230+5'-UTR,intron-Distal,intron-Proximal4.5150716.74652HepG2CSTF2
chr21777342317773525+CDS,intron-Proximal5.6314913.84231HepG2GRWD1
chr21783650417836611+CDS3.259094.91547HepG2GRWD1
chr21777341317773501+CDS3.060088.30744HepG2BCLAF1
chr21776684217766919+intron-Distal3.449053.48223HepG2RBFOX2
chr21772426817724308+intron-Distal3.677504.84410HepG2SUGP2
chr21783582917835902+intron-Distal3.921296.30359HepG2QKI
chr21775404817754140+intron-Distal3.858964.64467HepG2HNRNPL
chr21772977117729802+intron-Distal3.796253.04224HepG2SUGP2
chr21779431917794373+intron-Distal5.413899.83211HepG2PCBP2
chr21779297617793084+intron-Distal3.705506.70242HepG2PCBP2
chr21783571117835798+intron-Distal3.658264.84410HepG2SUGP2
chr21775584817755894+intron-Distal3.977533.16028HepG2SUGP2
chr21773672017736812+intron-Distal3.725045.03298HepG2HNRNPL
chr21779426817794319+intron-Distal3.356744.39142HepG2PCBP2
chr21778091717780961+intron-Distal5.9692821.51135HepG2PTBP1
chr21775811917758184+intron-Distal4.201824.40847HepG2PTBP1
chr21772511117725193+intron-Distal4.0626521.44612HepG2PTBP1
chr21778083617780965+intron-Distal3.325023.57598HepG2MATR3
chr21773833417738441+intron-Distal3.078785.01860HepG2HNRNPL
chr21783284517832918+intron-Distal3.719895.78794HepG2SUGP2
chr21778085817780917+intron-Distal5.6223024.48487HepG2PTBP1
chr21783263617832680+intron-Distal4.703895.97584HepG2MATR3
chr21783410317834192+intron-Distal3.193905.10681HepG2SUGP2
chr21772976317729828+intron-Distal3.439703.10961HepG2MATR3
chr21775518817755240+intron-Distal4.250444.31720HepG2MATR3
chr21772413817724186+intron-Distal3.368816.55984HepG2SUGP2
chr21772457617724631+intron-Distal3.643498.52173HepG2SUGP2
chr21772521417725275+intron-Distal4.558223.96879HepG2MATR3
chr21775595817755999+intron-Distal3.338973.84025HepG2SUGP2
chr21773000017730090+intron-Distal3.502359.84031HepG2SUGP2
chr21783262917832727+intron-Distal4.0087611.22696HepG2SUGP2
chr21775405417754114+intron-Distal4.177363.09122HepG2PTBP1
chr21773017217730235+intron-Distal3.666025.79523HepG2SUGP2
chr21778065617780730+intron-Distal4.123104.65731HepG2CSTF2
chr21775890617758974+intron-Distal3.381214.36650HepG2SUGP2
chr21775821317758320+intron-Distal3.272878.91653HepG2HNRNPL
chr21772357517723608+intron-Distal4.265554.51299HepG2SUGP2
chr21775073417750787+intron-Distal4.161363.41738HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VSNL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VSNL1 is not available on ENCORE database.

  • 88 RBPs can affect the levels of VSNL1.  








The Knockdown/knockout RNA-Seq assay for VSNL1 is not available on ENCORE database.





88 RBPs can affect the gene expression of VSNL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VSNL1ENSG00000163032.7886.395901184.09780-0.417806.005005.17780HepG2ACO1
VSNL1ENSG00000163032.7848.387202678.72580-1.6588035.0176033.40310HepG2AKAP1
VSNL1ENSG00000163032.71293.593201746.79860-0.433303.388702.24570HepG2AKAP8
VSNL1ENSG00000163032.71500.323101189.551600.334804.214503.28250HepG2AKAP8L
VSNL1ENSG00000163032.72181.197301791.166800.284103.611902.84510HepG2AUH
VSNL1ENSG00000163032.7648.310401099.39950-0.762006.874805.52970HepG2BCLAF1
VSNL1ENSG00000163032.73133.824301829.982100.776005.294104.50000HepG2BOP1
VSNL1ENSG00000163032.72600.325101932.577400.428103.902303.00950HepG2CALR
VSNL1ENSG00000163032.72760.243002105.768000.390303.409102.55620HepG2CIRBP
VSNL1ENSG00000163032.71770.058401183.708900.5804014.4560013.18490HepG2CKAP4
VSNL1ENSG00000163032.7955.137201430.60040-0.582803.427202.56870HepG2CNOT7
VSNL1ENSG00000163032.71269.690701664.11500-0.390303.808602.51640HepG2CPSF7
VSNL1ENSG00000163032.71466.49900781.583900.9078014.6619012.52470HepG2CSTF2
VSNL1ENSG00000163032.71614.050301350.922500.256602.483501.39100HepG2DDX1
VSNL1ENSG00000163032.7952.742801511.21930-0.665608.903307.75770HepG2DDX21
VSNL1ENSG00000163032.73023.088401907.843000.664003.908702.75790HepG2DDX59
VSNL1ENSG00000163032.72230.033401709.658200.383302.303801.38240HepG2DDX5
VSNL1ENSG00000163032.7605.111902204.18090-1.8650041.6540039.68390HepG2DDX6
VSNL1ENSG00000163032.71955.848401132.826700.7878021.2833019.82440HepG2DKC1
VSNL1ENSG00000163032.7776.633601391.81330-0.841708.427506.56360HepG2AGO1
VSNL1ENSG00000163032.71142.397302119.05830-0.8914012.9013011.68300HepG2EIF2S1
VSNL1ENSG00000163032.71223.713201532.89870-0.325002.911001.71060HepG2EIF2S2
VSNL1ENSG00000163032.7854.910301264.52860-0.564804.969803.78360HepG2EIF3D
VSNL1ENSG00000163032.72453.392602101.068700.223602.389601.60320HepG2EIF4G1
VSNL1ENSG00000163032.72334.714101750.471700.415403.969202.68140HepG2ESF1
VSNL1ENSG00000163032.71342.179002056.54790-0.6156014.1362012.94750HepG2ETF1
VSNL1ENSG00000163032.71395.125501156.958300.270002.048401.33190HepG2EWSR1
VSNL1ENSG00000163032.71595.237502040.47370-0.355102.363701.64800HepG2FIP1L1
VSNL1ENSG00000163032.71456.338202362.66400-0.698108.679707.51360HepG2FXR1
VSNL1ENSG00000163032.71587.589102191.81410-0.465303.853803.07350HepG2G3BP1
VSNL1ENSG00000163032.71519.833201125.903100.432703.263002.27980HepG2GEMIN5
VSNL1ENSG00000163032.7922.520801356.24400-0.556005.172303.77290HepG2GNB2L1
VSNL1ENSG00000163032.7745.124501209.28610-0.698605.364503.38730HepG2HNRNPA0
VSNL1ENSG00000163032.71786.464101479.401900.272003.019202.27210HepG2HNRNPF
VSNL1ENSG00000163032.71639.010102219.18430-0.437204.272103.41970HepG2HNRNPK
VSNL1ENSG00000163032.73985.893601817.667101.132707.886506.88470HepG2HNRNPLL
VSNL1ENSG00000163032.7901.344401407.82420-0.643308.848007.30980HepG2HNRNPM
VSNL1ENSG00000163032.71357.006401902.19430-0.487203.528402.13770HepG2HSPD1
VSNL1ENSG00000163032.71680.919902227.96560-0.406503.352902.61610HepG2IGF2BP2
VSNL1ENSG00000163032.72059.322401509.435800.4481010.514209.18090HepG2ILF2
VSNL1ENSG00000163032.7973.047101394.60000-0.519303.174001.74610HepG2ILF3
VSNL1ENSG00000163032.7946.035501362.72660-0.526503.824902.38450HepG2KHDRBS1
VSNL1ENSG00000163032.71517.679402376.74610-0.647106.572805.63270HepG2MATR3
VSNL1ENSG00000163032.71086.536101651.40200-0.604008.365007.02690HepG2MSI2
VSNL1ENSG00000163032.71949.918702432.75610-0.319202.122201.56440HepG2NCBP2
VSNL1ENSG00000163032.71462.302002111.91650-0.530308.920507.57410HepG2NOL12
VSNL1ENSG00000163032.7607.339901307.43320-1.106209.263507.58940HepG2PABPC1
VSNL1ENSG00000163032.71107.258601462.71930-0.401704.851303.76730HepG2PARN
VSNL1ENSG00000163032.71815.045902255.54200-0.313504.627603.87710HepG2PCBP1
VSNL1ENSG00000163032.71286.500201045.731500.298802.652601.44990HepG2PKM
VSNL1ENSG00000163032.7729.327801282.83690-0.814705.901503.71550HepG2PNPT1
VSNL1ENSG00000163032.71821.077201523.511400.257302.836302.05550HepG2PRPF4
VSNL1ENSG00000163032.71583.776602295.09250-0.5352011.5746010.60740HepG2PTBP1
VSNL1ENSG00000163032.71466.418402015.96760-0.459205.438404.63780HepG2PUF60
VSNL1ENSG00000163032.71233.415502139.98990-0.7949030.1301028.59860HepG2PUM1
VSNL1ENSG00000163032.71205.883702138.45700-0.8265011.9475010.61010HepG2PUM2
VSNL1ENSG00000163032.71470.198101206.061200.285603.551202.87170HepG2PUS1
VSNL1ENSG00000163032.71671.092002485.65430-0.5728010.633609.52390HepG2QKI
VSNL1ENSG00000163032.7367.029901776.52000-2.2751033.1656031.01800HepG2RAVER1
VSNL1ENSG00000163032.71595.409802255.88630-0.499806.714205.70450HepG2RBM25
VSNL1ENSG00000163032.71904.132302554.22240-0.423807.904507.07400HepG2NELFE
VSNL1ENSG00000163032.71833.513302378.90220-0.375706.392505.51040HepG2RECQL
VSNL1ENSG00000163032.72745.890801745.046600.653904.810203.58050HepG2RPS10
VSNL1ENSG00000163032.7712.824501230.43490-0.7875011.8144010.64940HepG2RPS19
VSNL1ENSG00000163032.71353.08620949.415600.511004.221703.27280HepG2RRP9
VSNL1ENSG00000163032.72716.166701932.705200.490902.981701.39750HepG2RTF1
VSNL1ENSG00000163032.71112.263401315.98390-0.242602.614801.98590HepG2SAFB2
VSNL1ENSG00000163032.71061.281002389.49800-1.1709047.8474045.97920HepG2SF3B4
VSNL1ENSG00000163032.7793.938201962.89290-1.305904.360202.47230HepG2SFPQ
VSNL1ENSG00000163032.71101.948401534.69220-0.477909.804308.71050HepG2SMN1
VSNL1ENSG00000163032.71120.292002001.92780-0.837502.751701.97270HepG2SNRNP70
VSNL1ENSG00000163032.72271.698201941.397500.226602.639002.14520HepG2SRFBP1
VSNL1ENSG00000163032.72854.699902494.114300.194702.304101.86220HepG2SRSF1
VSNL1ENSG00000163032.72634.761301935.687100.444703.274202.17530HepG2SRSF3
VSNL1ENSG00000163032.71343.540401990.41600-0.5670012.3402011.14650HepG2SRSF5
VSNL1ENSG00000163032.7946.118502029.09110-1.1007043.4974041.82760HepG2SRSF9
VSNL1ENSG00000163032.73015.496601685.561300.8391031.6956030.39300HepG2SSB
VSNL1ENSG00000163032.71411.398801894.99260-0.425102.944701.62240HepG2SSRP1
VSNL1ENSG00000163032.7933.327801249.12650-0.420502.515301.47380HepG2STIP1
VSNL1ENSG00000163032.71225.950401660.19490-0.437502.462801.33100HepG2SUB1
VSNL1ENSG00000163032.71966.685102263.70130-0.202902.736102.11730HepG2SUCLG1
VSNL1ENSG00000163032.7667.381201377.80510-1.0458021.1776018.84180HepG2SUPT6H
VSNL1ENSG00000163032.72632.840501771.183400.571802.489401.79600HepG2TARDBP
VSNL1ENSG00000163032.71163.152101448.69750-0.316704.034103.37850HepG2TRIM56
VSNL1ENSG00000163032.71614.996102084.56420-0.368202.754001.91960HepG2UBE2L3
VSNL1ENSG00000163032.72338.594801659.125200.4951011.2732010.03770HepG2UPF1
VSNL1ENSG00000163032.71235.869401746.90770-0.499303.227301.85430HepG2XRCC5
VSNL1ENSG00000163032.72506.159801503.540200.7370014.4280013.08890HepG2ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VSNL1 is not available on ENCORE database.





4 RBPs can affect the splicing of VSNL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVSNL1ENSG00000163032.7chr2+1772197417722185177212331772144917773336177735030.135000.000160.01477includedHepG2RBM22
SEVSNL1ENSG00000163032.7chr2+1772197117722185177212331772144917773336177735030.165000.000000.00155includedHepG2UPF1
SEVSNL1ENSG00000163032.7chr2+1772197117722185177212331772144917773336177735030.107000.002670.06547includedHepG2SF3A3
SEVSNL1ENSG00000163032.7chr2+1772197417722185177212331772144917773336177735030.107000.000660.07117includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VSNL1 is not avaliable on ENCORE database.