CTIF

General Information

Gene Name       : CTIF
Gene ID             : ENSG00000134030.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTIF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTIFENSG00000134030.130.671.651.16ENCSR000AEF
HepG2CTIFENSG00000134030.1319.907.4913.70ENCSR985KAT
K562CTIFENSG00000134030.133.002.602.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTIF is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTIF RNA is bound by 35 proteins.  







eCLIP assay for CTIF is not avaliable on ENCORE database.





35 proteins are bound to CTIF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr184638905646389189+3'-UTR,intron-Distal,intron-Proximal5.413859.83131K562UPF1
chr184638597946386102+3'-UTR4.456783.92497HepG2UPF1
chr184638905946389182+3'-UTR,intron-Distal,intron-Proximal3.128715.25167K562TIA1
chr184638599146386092+3'-UTR3.517574.85828HepG2BCLAF1
chr184638905046389125+3'-UTR,intron-Distal,intron-Proximal4.283913.35850HepG2TIAL1
chr184638907446389186+3'-UTR,intron-Distal,intron-Proximal4.672574.92659K562FAM120A
chr184638590846386027+3'-UTR,CDS3.283793.41665HepG2GRWD1
chr184628428446284415+3'-UTR,CDS,intron-Proximal3.059994.71502HepG2GRWD1
chr184628427246284324+3'-UTR,CDS,intron-Proximal3.562478.96569HepG2U2AF2
chr184614590846145969+3'-UTR,5'-UTR,CDS,intron-Proximal3.476296.89519HepG2PPIG
chr184606641546066440+5'-UTR,intron-Distal,intron-Proximal3.468115.68177HepG2CSTF2T
chr184606562746065685+5'-UTR,intron-Proximal3.329383.28035HepG2NCBP2
chr184606632146066387+5'-UTR,intron-Distal3.799425.37486K562NONO
chr184606633246066389+5'-UTR,intron-Distal3.132803.13437HepG2IGF2BP1
chr184606563246065684+5'-UTR,intron-Proximal4.439379.58174HepG2PPIG
chr184606594146065990+5'-UTR,intron-Distal3.119467.53777HepG2CSTF2T
chr184606633646066393+5'-UTR,intron-Distal4.1138415.20402HepG2CSTF2T
chr184606544946065477+5'-UTR5.463906.97910HepG2PCBP2
chr184606559946065671+5'-UTR4.6295017.90700HepG2PCBP2
chr184606631246066389+5'-UTR,intron-Distal3.059527.68772HepG2NKRF
chr184606644646066494+5'-UTR,intron-Distal,intron-Proximal3.550097.96389HepG2CSTF2T
chr184606581246065864+5'-UTR,intron-Distal3.820397.32269HepG2CSTF2T
chr184606630846066380+5'-UTR,intron-Distal4.734644.79919K562GEMIN5
chr184606656946066590+5'-UTR,intron-Distal4.687084.14795HepG2SFPQ
chr184606599046066040+5'-UTR,intron-Distal,intron-Proximal3.658738.28562HepG2CSTF2T
chr184606547746065599+5'-UTR6.9286131.76929HepG2PCBP2
chr184623798846238022+CDS,intron-Proximal3.194005.31654HepG2PPIG
chr184619707746197135+CDS,intron-Proximal4.5658114.23489HepG2PPIG
chr184619703646197077+CDS,intron-Proximal3.035545.77687HepG2PPIG
chr184619081446190865+CDS,intron-Proximal4.130839.28811HepG2GRWD1
chr184619013246190182+CDS3.603959.12797HepG2PPIG
chr184623805946238111+CDS,intron-Proximal4.022745.31213HepG2PRPF8
chr184619081646190861+CDS,intron-Proximal3.5593217.61272HepG2PPIG
chr184619018246190196+CDS3.3730513.68252HepG2PPIG
chr184623802246238068+CDS,intron-Proximal3.067876.34055HepG2PPIG
chr184606676146066792+intron-Distal,intron-Proximal4.720094.66110HepG2SFPQ
chr184625674746256843+intron-Distal3.826444.38996HepG2HNRNPM
chr184606695546066993+intron-Distal5.7450110.73431HepG2CSTF2T
chr184606631746066336+intron-Distal4.7423110.78166HepG2CSTF2T
chr184606731646067336+intron-Distal3.320396.13981HepG2CSTF2T
chr184630789146307945+intron-Distal4.184863.45219HepG2RBFOX2
chr184610336446103429+intron-Distal4.455193.97018HepG2HNRNPM
chr184625079946250902+intron-Distal3.504227.26220HepG2PCBP2
chr184606697346067059+intron-Distal3.156253.77798HepG2IGF2BP1
chr184606696346067058+intron-Distal5.178548.40158HepG2FASTKD2
chr184612963746129688+intron-Distal4.131126.56790HepG2FAM120A
chr184631148546311580+intron-Distal5.4263521.51135HepG2PTBP1
chr184636038946360466+intron-Distal5.1566014.08485HepG2PCBP2
chr184606721946067305+intron-Distal3.719687.57997HepG2NKRF
chr184613056146130603+intron-Distal3.618213.07834HepG2STAU2
chr184606756346067626+intron-Distal5.8843412.05287HepG2CSTF2T
chr184635135546351433+intron-Distal3.765156.21080HepG2PCBP2
chr184609842246098563+intron-Distal4.7855713.13634HepG2PCBP2
chr184628763546287729+intron-Distal,intron-Proximal5.8816154.57858HepG2SF3A3
chr184613008346130136+intron-Distal4.939455.38024HepG2FAM120A
chr184607296846073057+intron-Distal3.782055.52268HepG2RBFOX2
chr184612969746129755+intron-Distal3.190446.77715HepG2FAM120A
chr184628505246285158+intron-Distal5.7457941.95923HepG2RBFOX2
chr184625959046259682+intron-Distal3.116183.65608HepG2RBFOX2
chr184606714046067188+intron-Distal4.643959.31613HepG2CSTF2T
chr184625069746250781+intron-Distal4.325457.70131HepG2PCBP2
chr184613025246130279+intron-Distal3.716633.10063HepG2STAU2
chr184636559646365689+intron-Distal4.571648.88051HepG2PCBP2
chr184613002546130117+intron-Distal6.6122617.25166HepG2DKC1
chr184634683146346946+intron-Distal3.500655.14763HepG2HNRNPK
chr184606699346067067+intron-Distal4.4726613.46200HepG2CSTF2T
chr184606695446066996+intron-Distal4.2214012.15448HepG2FAM120A
chr184606722146067296+intron-Distal5.256555.22630HepG2SLTM
chr184611496446115050+intron-Distal4.118636.92189HepG2PCBP2
chr184606745446067537+intron-Distal4.1978313.54100HepG2CSTF2T
chr184606699646067062+intron-Distal3.5047314.95727HepG2FAM120A
chr184628486546284920+intron-Distal,intron-Proximal3.188046.78376HepG2EFTUD2
chr184606674746066814+intron-Distal,intron-Proximal3.7559311.50942HepG2CSTF2T
chr184620143146201509+intron-Distal4.205643.85108HepG2GTF2F1
chr184606722046067316+intron-Distal3.4269113.45529HepG2CSTF2T
chr184606675046066804+intron-Distal,intron-Proximal5.0038815.66890HepG2FAM120A
chr184606696546067074+intron-Distal4.023843.85482HepG2CDC40
chr184606695846067038+intron-Distal3.948015.28966HepG2XRN2
chr184607035546070455+intron-Distal3.825528.65817HepG2HNRNPM
chr184613001846130085+intron-Distal4.916273.26170K562EIF4G2
chr184613001646130078+intron-Distal4.443993.94684HepG2CSTF2T
chr184606695646067077+intron-Distal3.8937213.64578HepG2NKRF
chr184606697946067055+intron-Distal4.503415.86222K562NONO
chr184607313146073212+intron-Distal5.5326712.22491HepG2RBFOX2
chr184626332746263454+intron-Distal3.395977.73325HepG2RBFOX2
chr184608045246080594+intron-Distal4.380344.66899HepG2HNRNPM
chr184606701446067083+intron-Distal4.369255.36494K562DROSHA
chr184606676046066805+intron-Distal,intron-Proximal4.205643.30705HepG2GTF2F1
chr184612927246129322+intron-Distal4.503713.99130HepG2FAM120A
chr184613023546130252+intron-Distal3.716633.10063HepG2STAU2
chr184625377646253841+intron-Distal4.217544.59145HepG2XPO5
chr184606742246067444+intron-Distal4.372195.10887HepG2FAM120A
chr184613001746130083+intron-Distal5.8701413.74793HepG2FAM120A
chr184625095246251019+intron-Distal3.806389.63789HepG2PCBP2
chr184609846546098569+intron-Distal4.1945011.64729HepG2PTBP1
chr184633305246333137+intron-Distal4.341473.71028HepG2NKRF
chr184606696346067050+intron-Distal4.868857.58609HepG2PRPF4
chr184626490346265004+intron-Distal3.153966.79234HepG2RBFOX2
chr184606728146067309+intron-Distal4.788855.22156HepG2SFPQ
chr184626315046263286+intron-Distal5.3636310.00219HepG2RBFOX2
chr184620098346201062+intron-Distal5.056584.82195HepG2XPO5
chr184625739946257446+intron-Distal4.105934.36133HepG2CSTF2T
chr184628485546284935+intron-Distal,intron-Proximal3.013778.55117HepG2RBFOX2
chr184628768546287735+intron-Proximal3.853596.08339HepG2SF3B4
chr184628479746284862+intron-Proximal3.370833.47089HepG2TIAL1
chr184619021746190284+intron-Proximal3.717265.05356HepG2PRPF8
chr184628481646284857+intron-Proximal4.106603.94390HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTIF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTIF is not available on ENCORE database.

  • 72 RBPs can affect the levels of CTIF.  








The Knockdown/knockout RNA-Seq assay for CTIF is not available on ENCORE database.





72 RBPs can affect the gene expression of CTIF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTIFENSG00000134030.91135.19660800.206100.504404.334303.17430HepG2ABCF1
CTIFENSG00000134030.9728.34920438.086100.733304.004502.83120HepG2ADAR
CTIFENSG00000134030.9509.61200879.08040-0.786606.755505.96530HepG2AKAP1
CTIFENSG00000134030.9428.74790727.32130-0.762506.967205.74560HepG2ASCC1
CTIFENSG00000134030.9300.91470521.04600-0.792107.400606.22220HepG2CALR
CTIFENSG00000134030.91141.64000868.081400.395102.161701.30890HepG2CCAR1
CTIFENSG00000134030.9905.02510691.019500.389102.470201.73530HepG2CIRBP
CTIFENSG00000134030.9886.71900658.530400.429105.479004.60270HepG2CKAP4
CTIFENSG00000134030.9344.01600602.22280-0.807803.535202.66440HepG2CNOT7
CTIFENSG00000134030.9559.46670336.731100.732405.477104.03940HepG2CSTF2
CTIFENSG00000134030.9299.18660457.56760-0.612902.778601.42220HepG2CSTF2T
CTIFENSG00000134030.9815.24180609.181900.420305.195404.09990HepG2DDX19B
CTIFENSG00000134030.9823.79570492.294900.742708.385907.27450HepG2DDX21
CTIFENSG00000134030.9580.71380841.99820-0.536003.968303.23060HepG2DDX3X
CTIFENSG00000134030.91140.85670630.176900.8562017.8105016.43030HepG2DKC1
CTIFENSG00000134030.9574.32140437.276600.393202.845002.18550HepG2DNAJC2
CTIFENSG00000134030.9799.01690609.027300.391602.283501.44420HepG2EEF2
CTIFENSG00000134030.9673.15450465.183000.533004.843003.46050HepG2EIF3G
CTIFENSG00000134030.91005.35760748.247500.426002.170801.55930HepG2EIF4B
CTIFENSG00000134030.9325.88700469.36780-0.526303.584402.30710HepG2FASTKD2
CTIFENSG00000134030.9267.17270464.27890-0.797202.783401.76420HepG2FTO
CTIFENSG00000134030.9986.45910775.501100.347002.115901.50780HepG2FXR1
CTIFENSG00000134030.91065.41400763.767300.480103.714202.67300HepG2G3BP2
CTIFENSG00000134030.9814.59050440.141500.8880010.110908.46730HepG2GEMIN5
CTIFENSG00000134030.9905.43330557.587800.699304.762303.31350HepG2GRSF1
CTIFENSG00000134030.9971.22880445.326801.124806.694205.75510HepG2HNRNPA1
CTIFENSG00000134030.91026.46360728.673000.494204.080803.24640HepG2HNRNPK
CTIFENSG00000134030.9910.03700665.749500.450806.376805.39370HepG2HNRNPL
CTIFENSG00000134030.9914.88560704.922600.376003.241702.46240HepG2IGF2BP1
CTIFENSG00000134030.91386.47080916.500400.597104.612403.53120HepG2LARP4
CTIFENSG00000134030.9358.42300517.35030-0.529502.438401.44830HepG2METAP2
CTIFENSG00000134030.9937.44810724.733500.371203.505402.64730HepG2NOL12
CTIFENSG00000134030.9575.49160444.554600.372301.976301.33900HepG2NSUN2
CTIFENSG00000134030.9588.25990797.99520-0.439903.271801.53430HepG2NUP35
CTIFENSG00000134030.9373.05600487.05580-0.384702.555401.73850HepG2PARN
CTIFENSG00000134030.9959.61430790.224100.280102.359101.78930HepG2PCBP1
CTIFENSG00000134030.9668.59940438.901400.607106.942605.81530HepG2PPIL4
CTIFENSG00000134030.9846.41110577.277900.552003.023801.75650HepG2PRPF6
CTIFENSG00000134030.9664.60850413.400900.684903.103502.25250HepG2PRPF8
CTIFENSG00000134030.91043.80660691.838200.593206.724705.84920HepG2PUF60
CTIFENSG00000134030.9931.00940670.907700.472605.329704.52500HepG2PUS1
CTIFENSG00000134030.9768.65390471.600200.704705.286403.81240HepG2RCC2
CTIFENSG00000134030.91628.58550894.853900.8638020.9403019.72270HepG2NELFE
CTIFENSG00000134030.91457.77710833.366600.8066018.3102016.95550HepG2RECQL
CTIFENSG00000134030.9697.97590481.069700.536804.621603.84890HepG2RPS19
CTIFENSG00000134030.9705.19060535.571900.396802.077001.37740HepG2RPS2
CTIFENSG00000134030.9354.73860482.75650-0.444502.715301.78560HepG2SERBP1
CTIFENSG00000134030.9830.57850663.404900.324103.392202.62860HepG2SLBP
CTIFENSG00000134030.9360.52690552.11750-0.614903.090702.26410HepG2SNRNP70
CTIFENSG00000134030.9745.04930533.972900.480502.689101.70320HepG2SRSF3
CTIFENSG00000134030.91672.87220989.820200.7570019.4544018.35880HepG2SSB
CTIFENSG00000134030.9357.40110539.95210-0.595302.596901.39340HepG2STAU1
CTIFENSG00000134030.9667.52370971.45690-0.541303.544802.02740HepG2SUGP2
CTIFENSG00000134030.9675.51110488.741400.466803.192302.41900HepG2TARDBP
CTIFENSG00000134030.9662.84040478.069100.471304.068303.48700HepG2TIAL1
CTIFENSG00000134030.9594.09530482.438200.300302.248101.72930HepG2TRIM56
CTIFENSG00000134030.9837.26340525.458400.672002.939902.19270HepG2XRN2
CTIFENSG00000134030.9491.53520605.35120-0.300502.308201.68750HepG2ZC3H8
CTIFENSG00000134030.9250.16840385.04550-0.622104.765304.05420K562AGGF1
CTIFENSG00000134030.9254.10320174.041500.545902.488701.58110K562BCLAF1
CTIFENSG00000134030.9343.65360460.17270-0.421202.830901.63850K562CCDC124
CTIFENSG00000134030.9454.24080276.369900.716803.461602.24950K562CNOT7
CTIFENSG00000134030.9434.53310302.561300.522103.509602.14240K562DDX21
CTIFENSG00000134030.9291.81050196.907300.567402.389101.62430K562EIF4A3
CTIFENSG00000134030.948.1619094.77130-0.976602.841302.12200K562G3BP2
CTIFENSG00000134030.9470.47390308.584100.608403.348402.52010K562GRSF1
CTIFENSG00000134030.9339.65280476.34400-0.487903.151602.17000K562MBNL1
CTIFENSG00000134030.9389.49900293.034100.410502.623601.83520K562MTPAP
CTIFENSG00000134030.9535.30730325.570300.717308.743107.51860K562NSUN2
CTIFENSG00000134030.9426.77980265.510800.684603.348001.96860K562PABPC1
CTIFENSG00000134030.9221.79190152.062800.544402.628601.97900K562PTBP1
CTIFENSG00000134030.9347.44400513.67590-0.564104.220402.88300K562PUM1
CTIFENSG00000134030.9284.53300397.38430-0.481902.494301.97250K562PUS1
CTIFENSG00000134030.9387.23090270.036900.519903.482202.15770K562SRSF7
CTIFENSG00000134030.9225.98830150.871000.582802.649401.95520K562TARDBP
CTIFENSG00000134030.957.4352094.87080-0.724002.089501.39250K562U2AF2
CTIFENSG00000134030.9288.94060161.917800.835404.748303.37370K562UCHL5
CTIFENSG00000134030.9454.43500345.210500.396502.780102.05940K562UPF1
CTIFENSG00000134030.9504.42330295.383500.771904.764903.60100K562WDR3
CTIFENSG00000134030.9260.45810164.939000.659003.117801.80730K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTIF is not available on ENCORE database.





2 RBPs can affect the splicing of CTIF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSCTIFENSG00000134030.9chr18+4628428946284782462842894628477646287760462880600.318000.001560.05485longerHepG2U2AF2
A5SSCTIFENSG00000134030.9chr18+4628428946284782462842894628477646287760462880600.564000.000040.00565longerK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTIF is not avaliable on ENCORE database.