TSNAX

General Information

Gene Name       : TSNAX
Gene ID             : ENSG00000116918.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSNAX)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSNAXENSG00000116918.1328.1824.6126.39ENCSR000AEF
HepG2TSNAXENSG00000116918.1325.7128.4127.06ENCSR985KAT
K562TSNAXENSG00000116918.1339.3238.9739.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSNAX is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSNAX RNA is bound by 18 proteins.  







eCLIP assay for TSNAX is not avaliable on ENCORE database.





18 proteins are bound to TSNAX RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1231700787231700841+3'-UTR,intron-Distal3.5124715.32158K562PUM2
chr1231702137231702191+3'-UTR,intron-Distal3.938724.30850K562ZC3H11A
chr1231702116231702210+3'-UTR,intron-Distal3.292727.26174K562FAM120A
chr1231701763231701806+3'-UTR,intron-Distal4.155675.46178K562ZC3H11A
chr1231701764231701804+3'-UTR,intron-Distal4.7523723.61018K562PABPC4
chr1231701765231701806+3'-UTR,intron-Distal4.037925.13092K562APOBEC3C
chr1231701934231701968+3'-UTR,intron-Distal3.155355.04948K562PUM2
chr1231700743231700787+3'-UTR,intron-Distal3.345049.17239K562PUM2
chr1231701764231701816+3'-UTR,intron-Distal3.6540312.31596K562DDX6
chr1231701642231701685+3'-UTR,intron-Distal3.438515.75623K562FAM120A
chr1231701771231701818+3'-UTR,intron-Distal5.7880711.77145K562TIA1
chr1231701053231701099+3'-UTR,intron-Distal3.285614.86623K562PUM2
chr1231701684231701758+3'-UTR,intron-Distal3.1952114.57073K562PUM2
chr1231701915231702004+3'-UTR,intron-Distal4.3584814.69752K562FAM120A
chr1231664417231664512+5'-UTR3.402447.23788K562DDX3X
chr1231672958231673014+CDS,intron-Distal,intron-Proximal3.755565.37538K562ZNF622
chr1231696952231697011+5'-UTR,CDS,intron-Distal,intron-Proximal4.026883.02457HepG2BCLAF1
chr1231678298231678358+CDS,intron-Distal,intron-Proximal4.272535.47804K562ZNF622
chr1231664569231664653+CDS,intron-Proximal5.2528524.48086K562AQR
chr1231673014231673073+CDS,intron-Distal3.167154.44630K562ZNF622
chr1231664980231665023+CDS,intron-Proximal3.234827.65545K562AQR
chr1231665016231665109+5'-UTR,CDS,intron-Proximal3.599063.05298K562GRWD1
chr1231700261231700349+CDS,intron-Distal,intron-Proximal3.362265.24083K562U2AF2
chr1231696824231696905+5'-UTR,CDS,intron-Distal,intron-Proximal5.776729.44792K562SF3B4
chr1231676639231676719+intron-Distal4.044974.07352K562KHSRP
chr1231664653231664701+intron-Distal,intron-Proximal4.628629.04436K562AQR
chr1231673583231673673+intron-Distal3.774565.78005K562KHSRP
chr1231671939231672047+intron-Distal6.3185212.53103K562QKI
chr1231671797231671888+intron-Distal3.587284.83406HepG2QKI
chr1231667949231667964+intron-Distal3.692163.19036K562HNRNPL
chr1231697043231697114+intron-Distal,intron-Proximal3.985256.15234K562PRPF8
chr1231676560231676622+intron-Distal3.739363.06150K562KHSRP
chr1231676764231676844+intron-Distal3.109103.73266K562KHSRP
chr1231667964231667990+intron-Distal3.804353.39667K562HNRNPL
chr1231697042231697138+intron-Distal,intron-Proximal3.7520310.37908K562KHSRP
chr1231664803231664857+intron-Distal3.347433.20886K562PRPF8
chr1231671888231671996+intron-Distal3.745035.75173HepG2QKI
chr1231665108231665142+intron-Proximal4.091953.12843K562PRPF8
chr1231664963231664980+intron-Proximal3.553545.35619K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSNAX is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSNAX is not available on ENCORE database.

  • 91 RBPs can affect the levels of TSNAX.  








The Knockdown/knockout RNA-Seq assay for TSNAX is not available on ENCORE database.





91 RBPs can affect the gene expression of TSNAX :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSNAXENSG00000116918.9847.56150701.084100.273601.937301.41170HepG2ACO1
TSNAXENSG00000116918.9339.98410704.42490-1.0510019.2745017.51480HepG2AKAP8L
TSNAXENSG00000116918.9954.131401159.97380-0.281802.764102.07930HepG2AUH
TSNAXENSG00000116918.9423.32940752.74880-0.830406.580505.10260HepG2BCCIP
TSNAXENSG00000116918.9911.97510700.269200.381002.990102.19030HepG2CALR
TSNAXENSG00000116918.9581.36490700.98820-0.269902.202001.59800HepG2CKAP4
TSNAXENSG00000116918.9442.70000667.28600-0.592002.308401.67230HepG2CPSF6
TSNAXENSG00000116918.9330.12610540.09200-0.710206.016204.42610HepG2CPSF7
TSNAXENSG00000116918.9786.638201037.25830-0.399004.577903.78790HepG2CELF1
TSNAXENSG00000116918.9932.470001115.42960-0.258502.955702.19300HepG2DAZAP1
TSNAXENSG00000116918.9762.92380603.973600.337002.104101.50360HepG2DDX21
TSNAXENSG00000116918.9772.60010590.955900.386602.898901.96170HepG2DDX24
TSNAXENSG00000116918.9766.752901071.17310-0.482402.496101.90770HepG2DDX6
TSNAXENSG00000116918.9387.44900549.75720-0.504805.345604.48290HepG2DNAJC2
TSNAXENSG00000116918.9558.875601030.03750-0.882105.437104.62280HepG2EIF2S1
TSNAXENSG00000116918.9549.585001138.45420-1.050706.739005.73880HepG2EIF4A3
TSNAXENSG00000116918.9647.596601108.17460-0.775004.805203.91360HepG2EIF4B
TSNAXENSG00000116918.9802.513201054.06890-0.393403.078202.22110HepG2EIF4G2
TSNAXENSG00000116918.9797.457301065.37160-0.417901.954101.39080HepG2G3BP1
TSNAXENSG00000116918.9512.88420669.36890-0.384203.533302.43930HepG2HDGF
TSNAXENSG00000116918.9544.89750774.19330-0.506705.721504.73650HepG2HNRNPF
TSNAXENSG00000116918.9632.842201078.25890-0.768805.196004.26200HepG2HNRNPK
TSNAXENSG00000116918.9758.452001016.10810-0.421906.130005.16190HepG2HNRNPL
TSNAXENSG00000116918.9466.28100721.94210-0.630702.626802.01090HepG2HNRNPLL
TSNAXENSG00000116918.9543.06670762.36220-0.489304.431503.53360HepG2IGF2BP1
TSNAXENSG00000116918.9809.495401083.00710-0.419901.966401.38870HepG2IGF2BP2
TSNAXENSG00000116918.9451.14730632.04070-0.486405.831804.80320HepG2ILF2
TSNAXENSG00000116918.9557.84850772.25450-0.469203.400302.05080HepG2LIN28B
TSNAXENSG00000116918.9464.782701182.38760-1.3471010.234609.05870HepG2NCBP2
TSNAXENSG00000116918.91014.40610704.769000.525302.966301.89250HepG2PCBP2
TSNAXENSG00000116918.9223.91900387.67090-0.791903.208701.88320HepG2PKM
TSNAXENSG00000116918.9443.90540951.49020-1.0999025.4299024.09170HepG2PTBP1
TSNAXENSG00000116918.9492.271301055.78870-1.1008019.4732018.08260HepG2PUF60
TSNAXENSG00000116918.9735.550301120.72650-0.6075012.6395011.56790HepG2PUM1
TSNAXENSG00000116918.9303.59720714.10790-1.2340027.2159025.65780HepG2PUS1
TSNAXENSG00000116918.9793.141701030.56320-0.377803.627402.92660HepG2QKI
TSNAXENSG00000116918.91294.24360680.204300.928006.551205.49140HepG2RAVER1
TSNAXENSG00000116918.91343.559601113.127600.271302.366201.87710HepG2RBM22
TSNAXENSG00000116918.91182.17740935.273700.337902.661601.99790HepG2RBM25
TSNAXENSG00000116918.9300.18670766.58220-1.352604.974802.66090HepG2RBM39
TSNAXENSG00000116918.9804.396901058.94680-0.396704.467603.80980HepG2NELFE
TSNAXENSG00000116918.9572.59800817.86720-0.514303.863502.92300HepG2RPS2
TSNAXENSG00000116918.9762.22180555.166600.457202.084001.38900HepG2RPS3A
TSNAXENSG00000116918.9759.25230564.881200.426502.616901.84980HepG2RRP9
TSNAXENSG00000116918.91010.45050760.600200.409702.382601.75810HepG2SF3A3
TSNAXENSG00000116918.9841.869701012.25510-0.265902.795002.08970HepG2SLBP
TSNAXENSG00000116918.91289.11330795.134000.697003.438702.56230HepG2SNRNP70
TSNAXENSG00000116918.91770.935201257.245500.494109.631408.85150HepG2SRFBP1
TSNAXENSG00000116918.91455.259501034.037600.492907.732107.03400HepG2SRSF1
TSNAXENSG00000116918.91321.972601091.602200.276103.055802.52240HepG2SSB
TSNAXENSG00000116918.9666.35400929.36110-0.480003.770703.13290HepG2TAF15
TSNAXENSG00000116918.9379.40080606.61130-0.677008.541907.63740HepG2TRIM56
TSNAXENSG00000116918.9903.40650566.454400.673304.775903.96360HepG2U2AF1
TSNAXENSG00000116918.9296.60200435.26090-0.553403.182202.36970HepG2UCHL5
TSNAXENSG00000116918.9510.18400725.27710-0.507503.061102.29940HepG2XRN2
TSNAXENSG00000116918.9921.61790741.861100.312903.431102.84050HepG2ZNF622
TSNAXENSG00000116918.91498.050101945.05420-0.376703.487902.75100K562AKAP8L
TSNAXENSG00000116918.91458.642301801.80880-0.304803.350201.87630K562BCCIP
TSNAXENSG00000116918.91451.377301741.11980-0.262603.034602.03250K562BCLAF1
TSNAXENSG00000116918.9386.78940622.89060-0.687406.171904.42670K562CCAR1
TSNAXENSG00000116918.91663.583302361.06320-0.505102.623401.59500K562CNOT7
TSNAXENSG00000116918.91383.996502621.88620-0.9218023.0962020.18290K562CPEB4
TSNAXENSG00000116918.9974.650501479.88590-0.602508.436107.05180K562CPSF6
TSNAXENSG00000116918.91076.571101320.89860-0.295102.693801.65000K562CSTF2
TSNAXENSG00000116918.91399.953001685.23310-0.267602.453401.31760K562DDX21
TSNAXENSG00000116918.91289.153101611.83800-0.322302.832301.77750K562DDX3X
TSNAXENSG00000116918.9488.23030697.26880-0.514203.871502.25030K562DHX30
TSNAXENSG00000116918.91318.452501770.62240-0.425404.171902.66540K562EIF2S1
TSNAXENSG00000116918.91612.536702262.41080-0.488508.761007.59080K562EIF2S2
TSNAXENSG00000116918.91440.590301789.69550-0.313103.656602.75060K562EIF3G
TSNAXENSG00000116918.9984.728601516.61790-0.623106.220204.36920K562EIF4B
TSNAXENSG00000116918.93230.451803723.91320-0.205102.135101.30380K562EIF4G2
TSNAXENSG00000116918.91183.573001505.76190-0.347302.567601.74460K562FMR1
TSNAXENSG00000116918.91157.547901412.92140-0.287602.096801.40130K562GPKOW
TSNAXENSG00000116918.92263.285703014.96660-0.413705.011603.99590K562GRSF1
TSNAXENSG00000116918.91541.955302090.13760-0.438805.429803.94570K562HNRNPA1
TSNAXENSG00000116918.9876.140701506.67810-0.782104.119203.40590K562HNRNPC
TSNAXENSG00000116918.9870.924201345.05760-0.627003.174101.94740K562HNRNPF
TSNAXENSG00000116918.9586.894501033.90830-0.8169012.112608.84050K562HNRNPH1
TSNAXENSG00000116918.91654.563602451.54990-0.567208.121306.22530K562HNRNPL
TSNAXENSG00000116918.91627.702502258.01530-0.472203.666102.42210K562IGF2BP2
TSNAXENSG00000116918.91386.008102296.78140-0.7287011.749909.14960K562IGF2BP3
TSNAXENSG00000116918.92615.628702064.201900.341503.232902.33480K562KIF1C
TSNAXENSG00000116918.9857.710501206.47290-0.492203.119702.12110K562KRR1
TSNAXENSG00000116918.9969.935601527.24740-0.655003.452701.77340K562LIN28B
TSNAXENSG00000116918.91808.964802373.26840-0.391704.337503.28100K562MAGOH
TSNAXENSG00000116918.91895.622102368.48170-0.321303.169402.17820K562MATR3
TSNAXENSG00000116918.91371.610301862.74920-0.441607.928406.62430K562MTPAP
TSNAXENSG00000116918.91535.965002069.62060-0.4302010.151008.84440K562NSUN2
TSNAXENSG00000116918.91565.920402290.18640-0.548503.810301.94690K562PKM
TSNAXENSG00000116918.92975.636303826.41810-0.362804.859203.03130K562PNPT1
TSNAXENSG00000116918.9826.709401350.78130-0.708302.916801.98340K562PSIP1
TSNAXENSG00000116918.9863.831102305.76530-1.4164045.8928043.36380K562PTBP1
TSNAXENSG00000116918.92892.092204063.10890-0.490505.456404.31220K562PUF60
TSNAXENSG00000116918.91501.114401928.98730-0.361803.010402.44800K562PUS1
TSNAXENSG00000116918.92271.215101879.484900.273002.944902.33640K562RBM15
TSNAXENSG00000116918.91686.693502211.05360-0.390503.762702.76990K562RBM22
TSNAXENSG00000116918.9843.064201231.86620-0.547102.692801.71500K562RCC2
TSNAXENSG00000116918.91470.972201762.55940-0.260903.434501.67020K562RPS10
TSNAXENSG00000116918.9705.049201167.83290-0.728003.933702.64310K562SRFBP1
TSNAXENSG00000116918.91833.257502260.39810-0.302202.912502.18990K562SRSF1
TSNAXENSG00000116918.9663.73440992.22280-0.580106.064604.39620K562SRSF4
TSNAXENSG00000116918.91728.025502134.72490-0.304902.479501.49210K562SRSF5
TSNAXENSG00000116918.91201.264101503.74800-0.324003.474002.15190K562SRSF7
TSNAXENSG00000116918.9966.322501424.34060-0.559703.298402.18110K562SUPV3L1
TSNAXENSG00000116918.91714.365602206.74750-0.364204.066203.04630K562TIA1
TSNAXENSG00000116918.9736.304601299.29200-0.819404.035202.89060K562TIAL1
TSNAXENSG00000116918.9751.453001379.71960-0.876604.672603.36870K562TRIM56
TSNAXENSG00000116918.91723.710802190.74530-0.345902.668201.31980K562TRIP6
TSNAXENSG00000116918.91067.876401507.27240-0.497202.952501.89350K562UCHL5
TSNAXENSG00000116918.91920.627302194.46740-0.192302.053601.42880K562UPF1
TSNAXENSG00000116918.91121.781101534.48280-0.452002.712601.52070K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSNAX is not available on ENCORE database.





23 RBPs can affect the splicing of TSNAX :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSNAXENSG00000116918.9chr1+231699210231699375231696873231697001231700273231702270-0.069000.002080.03776excludedK562SF3B4
SETSNAXENSG00000116918.9chr1+231699210231699375231696873231697001231700273231702270-0.052000.000380.00908excludedHepG2U2AF1
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.144000.000000.00001includedK562AKAP8L
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.238000.000000.00000includedK562AQR
SETSNAXENSG00000116918.9chr1+231672958231673073231665000231665105231678226231678299-0.106000.000000.00000excludedK562AQR
SETSNAXENSG00000116918.9chr1+231699210231699375231696873231697001231700273231702270-0.065000.000020.00197excludedK562FXR1
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.109000.000000.00082includedK562HNRNPA1
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.171000.000000.00000includedK562SUPV3L1
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.280000.000000.00000includedK562PUS1
SETSNAXENSG00000116918.9chr1+231672958231673073231665000231665105231696873231697001-0.112000.000010.00022excludedK562PUS1
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.080000.000020.00610includedK562NSUN2
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.087000.000050.02710includedK562UCHL5
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.067000.000000.00139includedK562BUD13
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.075000.000000.00028includedK562LARP4
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.087000.000070.06169includedK562DDX21
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.074000.000000.00051includedK562HNRNPUL1
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.082000.000070.05632includedK562HLTF
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.103000.000010.00330includedK562SRSF7
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.060000.000340.05949includedK562UPF1
SETSNAXENSG00000116918.9chr1+2316992102316994542316968732316970012317002732317022700.051000.000090.00383includedK562AGGF1
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.171000.000000.00001includedK562CPSF6
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.103000.000000.00000includedK562ZC3H8
SETSNAXENSG00000116918.9chr1+231699210231699375231696873231697001231700273231702270-0.076000.000140.00838excludedK562PTBP1
SETSNAXENSG00000116918.9chr1+2316903662316905562316782262316783572316968732316970010.076000.000000.00003includedK562HNRNPC
SETSNAXENSG00000116918.9chr1+2316992102316993752316968732316970012317002732317022700.138000.000000.00000includedK562HNRNPC
SETSNAXENSG00000116918.9chr1+231672958231673073231665006231665105231678226231678357-0.073000.000170.00438excludedK562HNRNPC
MXETSNAXENSG00000116918.9chr1+2316782262316783572316968492316970012316729112316730732317002732317022700.167000.000010.000141includedK562AQR
MXETSNAXENSG00000116918.9chr1+2316782262316783572316968732316970012316650002316651052317002732317022700.168000.000000.000001includedK562AQR
MXETSNAXENSG00000116918.9chr1+2316782262316783572316968732316970012316729582316730732317002732317022700.158000.000020.000301includedK562AQR
MXETSNAXENSG00000116918.9chr1+231672958231673073231678226231678299231665000231665105231696873231696975-0.069000.000000.000002includedK562AQR
MXETSNAXENSG00000116918.9chr1+2316729582316730732316782262316783572316650002316651052316968732316970010.150000.011540.060601includedHepG2U2AF2
MXETSNAXENSG00000116918.9chr1+231678226231678357231696873231697001231672958231673073231700273231702270-0.101000.020590.094562includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSNAX is not avaliable on ENCORE database.