SMCHD1

General Information

Gene Name       : SMCHD1
Gene ID             : ENSG00000101596.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SMCHD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMCHD1ENSG00000101596.1555.4143.6949.55ENCSR000AEF
HepG2SMCHD1ENSG00000101596.1523.8942.0632.98ENCSR985KAT
K562SMCHD1ENSG00000101596.1546.5151.3848.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMCHD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMCHD1 RNA is bound by 51 proteins.  







eCLIP assay for SMCHD1 is not avaliable on ENCORE database.





51 proteins are bound to SMCHD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1827758082775884+3'-UTR,CDS3.562323.18236K562FXR1
chr1828042112804243+3'-UTR3.388215.32141K562UPF1
chr1827759022775923+3'-UTR,CDS,intron-Proximal3.691536.97808HepG2BCLAF1
chr1828025422802594+3'-UTR,CDS5.085627.80708K562FXR2
chr1828026062802627+3'-UTR3.013063.41227K562UCHL5
chr1828033452803399+3'-UTR3.093265.66400HepG2DDX55
chr1828048272804934+3'-UTR3.060376.48585K562KHSRP
chr1827636362763647+3'-UTR,CDS4.241307.53358HepG2BCLAF1
chr1828033422803387+3'-UTR4.0398914.11909K562PABPC4
chr1827964042796429+3'-UTR,CDS,intron-Proximal4.515527.97334HepG2BCLAF1
chr1827607142760736+3'-UTR,CDS3.780306.39464HepG2BCLAF1
chr1828025342802631+3'-UTR,CDS3.519904.87139HepG2FXR2
chr1828037622803809+3'-UTR3.634147.29435K562UPF1
chr1827636372763672+3'-UTR,CDS4.071695.80935K562ZNF622
chr1827960142796097+3'-UTR,CDS5.0175719.54581HepG2BCLAF1
chr1827636092763663+3'-UTR,CDS,intron-Proximal3.668935.83621K562AQR
chr1827722472772285+3'-UTR,CDS,intron-Proximal4.1906112.93761HepG2BCLAF1
chr1827715952771616+3'-UTR,CDS3.611848.66838HepG2BCLAF1
chr1827700732770106+3'-UTR,CDS3.982146.29174K562ZNF622
chr1827697452769819+3'-UTR,CDS,intron-Proximal3.386868.58389K562DDX24
chr1828040692804150+3'-UTR6.4145020.27105K562UPF1
chr1828033462803398+3'-UTR4.291993.60623K562APOBEC3C
chr1828044592804516+3'-UTR4.310005.97891K562FAM120A
chr1828041062804165+3'-UTR3.576395.53175K562FAM120A
chr1827715472771592+3'-UTR,CDS4.056564.30417K562YBX3
chr1828042862804393+3'-UTR3.689085.19341K562FAM120A
chr1827621022762161+3'-UTR,CDS,intron-Proximal4.3141415.55920HepG2BCLAF1
chr1827722492772374+3'-UTR,CDS,intron-Proximal3.465103.56099K562TRA2A
chr1827699872770043+3'-UTR,CDS3.9819614.49791K562DDX24
chr1827697612769819+3'-UTR,CDS,intron-Proximal3.5654611.74374HepG2BCLAF1
chr1827699862770022+3'-UTR,CDS,intron-Proximal5.8728213.58086HepG2BCLAF1
chr1827778032777810+3'-UTR,CDS,intron-Proximal4.178077.09561HepG2BCLAF1
chr1828038092803869+3'-UTR5.8248612.42760K562UPF1
chr1827960662796102+3'-UTR,CDS3.388383.09866HepG2FXR2
chr1827637182763786+3'-UTR,CDS4.3496211.86893K562DDX24
chr1828038902803942+3'-UTR3.536414.75109K562UPF1
chr1827722592772395+3'-UTR,CDS,intron-Proximal3.870325.89850HepG2AQR
chr1827700702770106+3'-UTR,CDS5.8421212.09921HepG2BCLAF1
chr1827960112796066+3'-UTR,CDS3.927864.28265HepG2FXR2
chr1828033422803403+3'-UTR4.872508.42748K562ZC3H11A
chr1827637352763780+3'-UTR,CDS3.7711810.68403HepG2BCLAF1
chr1827500392750064+5'-UTR,CDS,intron-Proximal3.429943.75245K562BUD13
chr1827292712729331+5'-UTR,CDS,intron-Proximal4.805336.76879K562U2AF2
chr1827407742740855+5'-UTR,CDS,intron-Proximal5.413424.35676HepG2PRPF8
chr1827513582751390+5'-UTR,CDS4.398694.38106HepG2PPIG
chr1827407622740817+5'-UTR,CDS5.8884826.18100HepG2BCLAF1
chr1827324262732452+5'-UTR,CDS3.748359.74534HepG2BCLAF1
chr1827501002750120+5'-UTR,CDS4.017577.23562HepG2BCLAF1
chr1826558942655973+5'-UTR4.808068.45462K562GEMIN5
chr1827476272747644+5'-UTR,CDS4.438448.85766HepG2BCLAF1
chr1827476392747681+5'-UTR,CDS,intron-Proximal4.518454.85612K562PRPF8
chr1826557752655839+5'-UTR3.803524.57394K562HNRNPM
chr1827249922725028+5'-UTR,CDS,intron-Proximal3.972874.84268K562SF3B4
chr1827525162752586+5'-UTR,CDS,intron-Proximal3.439396.04213K562PRPF8
chr1827503362750383+5'-UTR,CDS,intron-Proximal3.431393.46826K562U2AF1
chr1827292702729321+5'-UTR,CDS,intron-Proximal4.429834.52791K562U2AF1
chr1827384022738452+5'-UTR,CDS4.0312010.78406HepG2BCLAF1
chr1827503392750372+5'-UTR,CDS,intron-Proximal4.820454.40745K562SF3B4
chr1827249362725028+5'-UTR,CDS,intron-Proximal3.413389.52204K562EFTUD2
chr1827524502752508+5'-UTR,CDS,intron-Proximal3.196974.46214K562U2AF2
chr1826559072656004+5'-UTR3.8937820.34347HepG2DDX3X
chr1827500412750070+5'-UTR,CDS4.6695810.19430HepG2BCLAF1
chr1827524442752505+5'-UTR,CDS,intron-Proximal4.032167.97066HepG2U2AF2
chr1827437402743787+5'-UTR,CDS,intron-Proximal5.031906.23414HepG2BUD13
chr1827284402728495+5'-UTR,CDS,intron-Proximal3.285317.93438HepG2U2AF2
chr1826557512655861+5'-UTR4.022186.67587HepG2DDX3X
chr1826557812655862+5'-UTR3.747095.06399K562DDX3X
chr1827503402750361+5'-UTR,CDS,intron-Proximal3.688916.86521K562U2AF2
chr1827504812750504+5'-UTR,CDS4.145968.51432HepG2BCLAF1
chr1827264412726503+5'-UTR,CDS,intron-Proximal3.846095.18845HepG2U2AF2
chr1827501082750120+5'-UTR,CDS3.362265.24083K562U2AF2
chr1827524192752494+5'-UTR,CDS,intron-Proximal4.509707.08280K562SF3B4
chr1827324782732528+5'-UTR,CDS,intron-Proximal3.318743.40058K562PRPF8
chr1827525152752570+5'-UTR,CDS,intron-Proximal5.197955.93840HepG2PRPF8
chr1827385422738554+5'-UTR,CDS,intron-Proximal5.3957914.28850K562AQR
chr1827284412728502+5'-UTR,CDS,intron-Proximal3.5913911.60641K562SF3B4
chr1827475692747616+5'-UTR,CDS4.846599.30195HepG2BCLAF1
chr1827264402726497+5'-UTR,CDS,intron-Proximal3.4822510.51392K562BUD13
chr1827284472728491+5'-UTR,CDS,intron-Proximal3.650455.24632K562U2AF1
chr1827322392732310+5'-UTR,CDS,intron-Proximal3.040374.43994HepG2U2AF2
chr1827503472750389+5'-UTR,CDS,intron-Proximal4.3456010.24470HepG2BCLAF1
chr1827513642751383+5'-UTR,CDS3.469145.15500HepG2BCLAF1
chr1827324522732470+5'-UTR,CDS4.073879.69111HepG2BCLAF1
chr1827249172724991+5'-UTR,CDS4.1410418.14334HepG2BCLAF1
chr1827524602752495+5'-UTR,CDS,intron-Proximal4.201924.95436K562GPKOW
chr1827292602729321+5'-UTR,CDS,intron-Proximal3.423736.36450HepG2U2AF2
chr1827284432728495+5'-UTR,CDS,intron-Proximal3.700266.03804K562U2AF2
chr1827264642726514+5'-UTR,CDS3.033763.40321HepG2GRWD1
chr1827249892725041+5'-UTR,CDS,intron-Proximal3.031116.62672K562AQR
chr1827263972726451+5'-UTR,CDS,intron-Proximal4.7200918.60316K562SF3B4
chr1827385152738540+5'-UTR,CDS3.895367.58784HepG2BCLAF1
chr1827524382752488+5'-UTR,CDS,intron-Proximal4.469216.48405K562AQR
chr1827503612750383+5'-UTR,CDS3.381505.24083K562U2AF2
chr1827183302718375+CDS3.8318310.68403HepG2BCLAF1
chr1826562422656339+CDS,intron-Proximal3.591846.25527HepG2PRPF8
chr1826945242694554+CDS,intron-Proximal3.7268512.60692HepG2BCLAF1
chr1826668682666924+CDS,intron-Proximal4.479024.74293HepG2ZNF800
chr1827075602707640+CDS,intron-Proximal3.969153.61890HepG2G3BP1
chr1827078472707890+CDS4.106213.49332HepG2PPIG
chr1826978322697917+CDS3.7914220.24655K562DDX24
chr1826945232694548+CDS,intron-Proximal3.8329913.12700K562DDX24
chr1826741202674144+CDS4.298077.82678K562ZNF622
chr1827005642700600+CDS3.496786.60490HepG2BCLAF1
chr1827078042707814+CDS,intron-Proximal3.758644.52024HepG2PPIG
chr1826883912688449+CDS,intron-Proximal4.4285021.98661K562DDX24
chr1827075702707598+CDS3.687848.66838HepG2BCLAF1
chr1827005082700558+CDS,intron-Proximal3.062043.93988K562U2AF1
chr1826668692666986+CDS4.2744433.55819K562DDX24
chr1826886252688655+CDS,intron-Proximal3.322436.17838K562ZNF622
chr1826945582694629+CDS3.591158.43531K562ZNF622
chr1826669162666944+CDS4.1523012.93761HepG2BCLAF1
chr1826561922656263+CDS,intron-Proximal3.745495.18314K562SRSF1
chr1826946672694721+CDS,intron-Proximal5.6802611.09609HepG2PRPF8
chr1827009042700915+CDS3.857396.81385HepG2BCLAF1
chr1827225872722647+CDS,intron-Distal3.130083.80299HepG2GRWD1
chr1826884562688505+CDS3.5997310.03572K562ZNF622
chr1827078032707881+CDS,intron-Proximal5.9097026.18100HepG2BCLAF1
chr1826886452688747+CDS,intron-Proximal3.6165623.48789K562DDX24
chr1827006142700658+CDS,intron-Proximal3.9627719.59414HepG2BCLAF1
chr1826562542656323+CDS,intron-Proximal3.720525.50856K562EXOSC5
chr1827005042700555+CDS,intron-Proximal3.082406.02419K562AQR
chr1827078052707853+CDS4.765835.85077HepG2FXR2
chr1827225812722621+CDS,intron-Distal3.445389.03865HepG2BCLAF1
chr1827006972700759+CDS,intron-Proximal4.023547.98670K562SF3B4
chr1827036902703753+CDS4.8771015.10546HepG2BCLAF1
chr1827057482705811+CDS,intron-Proximal3.7681716.33569HepG2BCLAF1
chr1826945242694558+CDS,intron-Proximal3.199227.92361K562ZNF622
chr1826740852674141+CDS3.305924.41784HepG2GRWD1
chr1826740872674144+CDS3.6822715.59767HepG2BCLAF1
chr1826980022698034+CDS4.092408.94445HepG2BCLAF1
chr1826945772694633+CDS3.3141412.03080HepG2BCLAF1
chr1826886582688746+CDS,intron-Proximal4.4750724.61094HepG2BCLAF1
chr1826668682666929+CDS,intron-Proximal3.978644.95416K562ZNF800
chr1827007302700773+CDS,intron-Proximal4.1793615.80902HepG2BCLAF1
chr1826883912688439+CDS,intron-Proximal4.0745917.71485HepG2BCLAF1
chr1826886792688703+CDS3.252618.54654K562ZNF622
chr1826945782694635+CDS3.107183.79741HepG2GRWD1
chr1826979582697975+CDS3.800626.39464HepG2BCLAF1
chr1827183072718359+CDS,intron-Proximal3.465974.57435K562SF3B4
chr1827075592707602+CDS,intron-Proximal3.588173.23276K562FXR1
chr1826970352697085+CDS3.5745910.65310HepG2BCLAF1
chr1827005262700594+CDS,intron-Proximal4.950718.92460K562U2AF2
chr1826886552688679+CDS4.086929.36792K562ZNF622
chr1826740142674120+CDS3.3569819.45982K562ZNF622
chr1826884492688500+CDS3.524839.24221K562DDX24
chr1826561102656141+CDS4.134714.82666HepG2DDX3X
chr1827006862700767+CDS,intron-Proximal3.378593.24842K562RBM22
chr1826978372697909+CDS3.9511316.61867HepG2BCLAF1
chr1826978422697906+CDS3.218373.79741HepG2GRWD1
chr1826561742656257+CDS4.489447.08325K562FXR2
chr1826562332656390+CDS,intron-Distal,intron-Proximal4.3780622.30872K562EFTUD2
chr1826945252694557+CDS3.444393.95214K562GPKOW
chr1826668752666915+CDS3.218108.30608K562YBX3
chr1827004862700568+CDS,intron-Proximal3.215298.31472K562SF3B4
chr1826741112674145+CDS,intron-Proximal4.8561924.91507K562DDX24
chr1827005082700576+CDS,intron-Proximal3.155599.01228K562GPKOW
chr1826668692666916+CDS3.9985916.85893HepG2BCLAF1
chr1826733252673356+CDS4.136025.74136K562DDX24
chr1826740162674080+CDS3.7525714.71579HepG2BCLAF1
chr1826740132674066+CDS,intron-Proximal3.062483.50639HepG2PPIG
chr1826669472666999+CDS5.3674317.91753HepG2BCLAF1
chr1826946642694751+CDS,intron-Proximal4.3315619.02275K562PRPF8
chr1827075182707569+CDS,intron-Proximal3.815726.67591K562SF3B4
chr1826884632688500+CDS3.199468.23663HepG2BCLAF1
chr1827038412703863+CDS3.785224.06757K562UCHL5
chr1827075612707646+CDS,intron-Proximal4.5911315.99366HepG2PPIG
chr1826670012667068+CDS,intron-Proximal3.317987.52282K562PRPF8
chr1826670032667027+CDS3.007056.17838K562ZNF622
chr1827075982707643+CDS4.6355320.44120HepG2BCLAF1
chr1827007312700760+CDS,intron-Proximal3.776266.11414K562BUD13
chr1827236712723710+intron-Distal3.450823.62418K562PTBP1
chr1826674462667511+intron-Distal3.837577.20117K562PTBP1
chr1827163972716432+intron-Distal4.8350014.70278K562HNRNPM
chr1827325402732618+intron-Distal,intron-Proximal3.005234.58586K562EFTUD2
chr1827354912735555+intron-Distal3.648743.03056K562PPIL4
chr1827146572714685+intron-Distal5.4775812.51380K562KHSRP
chr1827146852714754+intron-Distal3.7298512.03035K562KHSRP
chr1827160942716146+intron-Distal5.7981613.65405K562EXOSC5
chr1827145152714528+intron-Distal3.674579.85515K562KHSRP
chr1826835162683549+intron-Distal3.097303.37654K562EXOSC5
chr1827104812710515+intron-Distal5.299509.02315K562EXOSC5
chr1827342952734401+intron-Distal4.651575.47569HepG2U2AF2
chr1827065192706635+intron-Distal,intron-Proximal3.9993015.50889K562KHSRP
chr1827265792726666+intron-Distal,intron-Proximal3.4271013.55197K562KHSRP
chr1827179502718056+intron-Distal3.918099.94478K562KHSRP
chr1827079932708093+intron-Distal,intron-Proximal6.4265721.88108K562PRPF8
chr1826719732672111+intron-Distal4.320746.70726K562MATR3
chr1827269302727053+intron-Distal4.1214912.40108HepG2KHSRP
chr1827060422706096+intron-Distal3.188243.31157HepG2KHSRP
chr1827106682710707+intron-Distal4.931027.06230K562EXOSC5
chr1827527482752819+intron-Distal4.805267.24774K562KHSRP
chr1826589282659022+intron-Distal3.561963.27276HepG2HNRNPL
chr1826797912679869+intron-Distal3.733979.35458K562MATR3
chr1827528042752870+intron-Distal3.515954.35635K562PRPF8
chr1827139302714027+intron-Distal3.6057512.14799K562KHSRP
chr1827522732752355+intron-Distal3.545715.04794HepG2KHSRP
chr1826828932682932+intron-Distal3.708504.02241K562EXOSC5
chr1827074432707502+intron-Distal,intron-Proximal4.635603.66199K562QKI
chr1827163412716430+intron-Distal4.0285914.35826HepG2HNRNPM
chr1826866382686708+intron-Distal4.883147.88729K562TARDBP
chr1827591952759281+intron-Distal3.232568.11912K562KHSRP
chr1826783112678320+intron-Distal4.9860211.52400K562PTBP1
chr1827162112716272+intron-Distal5.1183536.76457K562HNRNPM
chr1827288282728883+intron-Distal7.3742136.00986K562FMR1
chr1826702182670417+intron-Distal3.743973.68462HepG2MATR3
chr1827192092719230+intron-Distal4.142623.03891HepG2PTBP1
chr1826589352658977+intron-Distal4.222718.46806K562HNRNPL
chr1827145532714597+intron-Distal3.7183710.98514K562EXOSC5
chr1827192342719253+intron-Distal3.324556.21509K562MATR3
chr1826728632672974+intron-Distal3.4203910.99059K562KHSRP
chr1826566542656722+intron-Distal4.030826.35873K562PRPF8
chr1827142752714309+intron-Distal3.521628.16768K562EXOSC5
chr1826833452683409+intron-Distal5.4684310.67022K562EXOSC5
chr1828023222802386+intron-Distal5.3173211.62275K562KHSRP
chr1826702252670291+intron-Distal3.933175.47496K562MATR3
chr1826836612683747+intron-Distal4.5397814.02635K562HNRNPM
chr1826783092678352+intron-Distal4.294034.40847HepG2PTBP1
chr1827365942736630+intron-Distal3.609673.10466K562SAFB2
chr1827146282714657+intron-Distal4.2100911.86374K562KHSRP
chr1827325422732606+intron-Distal,intron-Proximal4.474718.53255K562PRPF8
chr1827265832726653+intron-Distal,intron-Proximal5.056727.22833HepG2KHSRP
chr1827717002771765+intron-Distal,intron-Proximal4.554954.53454K562PRPF8
chr1826865782686638+intron-Distal3.967677.54016K562TARDBP
chr1827192532719309+intron-Distal3.953438.38505K562MATR3
chr1826652742665338+intron-Distal3.850163.39716K562U2AF2
chr1827058702705939+intron-Distal,intron-Proximal3.259313.53952HepG2KHSRP
chr1827622982762341+intron-Distal,intron-Proximal4.846024.86944K562AQR
chr1826658482665939+intron-Distal4.1653911.54160K562KHSRP
chr1826830642683125+intron-Distal3.201654.34882K562EXOSC5
chr1827590032759195+intron-Distal3.3825513.35405K562KHSRP
chr1826875122687580+intron-Distal3.961536.71166K562EXOSC5
chr1826803282680380+intron-Distal4.522874.48623K562EXOSC5
chr1826702132670330+intron-Distal3.978095.65979HepG2PTBP1
chr1826702912670358+intron-Distal4.359753.45817K562MATR3
chr1827780372778101+intron-Distal,intron-Proximal4.263024.37030K562KHSRP
chr1827140482714110+intron-Distal3.9913414.53524K562KHSRP
chr1826800092680088+intron-Distal3.079535.38571K562MATR3
chr1827141202714145+intron-Distal4.500989.10500K562EXOSC5
chr1827365142736594+intron-Distal4.165183.65589K562SAFB2
chr1826865882686686+intron-Distal3.138544.60537K562EXOSC5
chr1827163432716397+intron-Distal5.1880637.03594K562HNRNPM
chr1827143772714416+intron-Distal4.3824112.46178K562EXOSC5
chr1827282442728271+intron-Distal3.9164617.99345K562KHSRP
chr1827393162739359+intron-Distal,intron-Proximal3.869147.22994K562KHSRP
chr1827147942714876+intron-Distal4.7083122.43880K562EXOSC5
chr1827333752733445+intron-Distal3.791413.49896K562KHDRBS1
chr1827633862763431+intron-Distal3.856813.89294K562KHSRP
chr1826672092667344+intron-Distal4.050465.97215K562MATR3
chr1827261352726180+intron-Distal3.610495.96041K562KHSRP
chr1827314922731588+intron-Distal3.360357.30615K562KHSRP
chr1827294262729547+intron-Distal,intron-Proximal4.4234023.40850K562KHSRP
chr1827288082728832+intron-Distal,polyA_site3.726685.55220K562CSTF2T
chr1827313422731361+intron-Distal3.139355.78064K562KHSRP
chr1827591022759162+intron-Distal4.620926.07481HepG2SUGP2
chr1826867082686786+intron-Distal3.359804.38938K562TARDBP
chr1827288832728919+intron-Distal4.703808.53601K562FMR1
chr1826803732680450+intron-Distal3.515275.28799K562MATR3
chr1827192212719345+intron-Distal6.3216651.89983K562PTBP1
chr1827832002783286+intron-Distal3.182706.82127K562KHSRP
chr1826968392696896+intron-Distal4.739366.73684K562KHSRP
chr1826835112683556+intron-Distal3.343703.10810K562HNRNPM
chr1826801672680221+intron-Distal3.528264.03284K562MATR3
chr1827148242714860+intron-Distal4.265934.12480HepG2HNRNPM
chr1827251672725216+intron-Distal3.996497.05443K562KHSRP
chr1827313902731420+intron-Distal3.242846.24191K562KHSRP
chr1827596082759638+intron-Distal3.823693.03357HepG2HNRNPC
chr1827144592714515+intron-Distal3.9075711.26860K562KHSRP
chr1827283332728357+intron-Distal,intron-Proximal3.149295.82594K562KHSRP
chr1828022322802301+intron-Distal4.856818.57350K562KHSRP
chr1827270532727151+intron-Distal4.464149.59273HepG2KHSRP
chr1827233232723456+intron-Distal5.062916.79824HepG2HNRNPM
chr1827288302728937+intron-Distal5.183727.22648HepG2CSTF2
chr1827064892706617+intron-Distal,intron-Proximal3.8375412.85356K562EFTUD2
chr1827831222783194+intron-Distal3.517599.66830K562KHSRP
chr1827146002714628+intron-Distal3.579348.76942K562KHSRP
chr1827362832736370+intron-Distal3.370796.76076K562SAFB2
chr1827374182737481+intron-Distal3.418905.74046K562SAFB2
chr1826803912680497+intron-Distal3.397156.31916HepG2SUGP2
chr1827357842735842+intron-Distal4.246324.95197K562SAFB2
chr1826930942693180+intron-Distal5.5973711.37219K562LSM11
chr1826674502667537+intron-Distal3.201823.59395HepG2PTBP1
chr1827357952735832+intron-Distal3.726133.33192K562SAFB
chr1827356092735743+intron-Distal3.341835.94978K562SAFB2
chr1827314332731572+intron-Distal4.931737.27881HepG2KHSRP
chr1826867072686812+intron-Distal4.591989.69330K562EXOSC5
chr1826829922683044+intron-Distal3.111315.41698K562EXOSC5
chr1827162632716312+intron-Distal4.4124813.07109K562EXOSC5
chr1827109832711033+intron-Distal3.425997.41185K562EXOSC5
chr1827267912726845+intron-Distal3.2479710.88479K562KHSRP
chr1827234912723571+intron-Distal5.486589.21686K562HNRNPM
chr1827142662714308+intron-Distal4.0684613.13856K562KHSRP
chr1826563162656393+intron-Distal,intron-Proximal5.131916.80961HepG2EFTUD2
chr1827172902717333+intron-Distal3.290545.29801K562EXOSC5
chr1827307132730786+intron-Distal3.007643.81193HepG2QKI
chr1826834462683488+intron-Distal3.013004.09304K562EXOSC5
chr1827281602728306+intron-Distal3.3865910.80452HepG2KHSRP
chr1827249972725101+intron-Distal,intron-Proximal3.394467.78008K562PRPF8
chr1827228332722959+intron-Distal3.1969313.21686K562KHSRP
chr1827058722705918+intron-Distal,intron-Proximal4.646214.96013K562PRPF8
chr1827140662714099+intron-Distal3.696276.13002K562EXOSC5
chr1827522512752338+intron-Distal4.071073.50357HepG2QKI
chr1827065262706611+intron-Distal,intron-Proximal3.613454.03817HepG2KHSRP
chr1827527122752748+intron-Distal3.776806.89837K562KHSRP
chr1827229592723087+intron-Distal3.030808.32991K562KHSRP
chr1827145382714599+intron-Distal3.1587715.23771K562KHSRP
chr1827162722716331+intron-Distal3.616156.91468HepG2HNRNPM
chr1826845072684561+intron-Distal3.493765.17040K562KHSRP
chr1826834232683499+intron-Distal4.434937.46973K562KHSRP
chr1827312842731342+intron-Distal5.4685112.29181K562KHSRP
chr1827236582723704+intron-Distal4.232183.96879HepG2MATR3
chr1827058272705962+intron-Distal,intron-Proximal4.1699917.27386K562KHSRP
chr1826719992672101+intron-Distal3.565043.30286HepG2PTBP1
chr1826703952670455+intron-Distal3.446514.26619K562MATR3
chr1827133092713348+intron-Distal3.260396.83596K562EXOSC5
chr1827160532716094+intron-Distal4.457258.51158K562EXOSC5
chr1827146062714641+intron-Distal5.0549815.79894K562EXOSC5
chr1826704012670469+intron-Distal5.154866.90462K562PTBP1
chr1827582672758329+intron-Distal3.299584.86332HepG2SUGP2
chr1827589242758982+intron-Distal3.707256.25586HepG2SUGP2
chr1826703772670474+intron-Distal3.764595.07626HepG2PTBP1
chr1827161882716211+intron-Distal3.448607.25781K562HNRNPM
chr1827162722716327+intron-Distal4.7380719.38141K562HNRNPM
chr1826832482683272+intron-Distal3.957253.01456K562EXOSC5
chr1827148052714871+intron-Distal4.116185.30350K562HNRNPM
chr1827152152715258+intron-Distal3.3215210.70285K562EXOSC5
chr1826699652670014+intron-Distal3.222783.56409K562MATR3
chr1827138742713921+intron-Distal5.7246110.01029K562EXOSC5
chr1827147162714840+intron-Distal4.939706.80441HepG2MATR3
chr1827142312714266+intron-Distal5.170308.49499K562KHSRP
chr1827147172714777+intron-Distal4.6907714.87928K562EXOSC5
chr1827268522726877+intron-Distal3.360353.90146K562KHSRP
chr1826835602683641+intron-Distal4.3947512.46063K562EXOSC5
chr1826835632683645+intron-Distal4.900328.56038K562HNRNPM
chr1827143172714435+intron-Distal4.2794618.56785K562KHSRP
chr1827237162723776+intron-Distal3.903806.71800K562MATR3
chr1827282712728333+intron-Distal4.7016421.40218K562KHSRP
chr1827103542710416+intron-Distal4.1911210.61937K562EXOSC5
chr1827267202726763+intron-Distal4.485565.37430HepG2KHSRP
chr1827161872716263+intron-Distal4.5998514.87928K562EXOSC5
chr1827236332723716+intron-Distal3.673808.11042K562MATR3
chr1826702212670283+intron-Distal4.080288.27870K562PTBP1
chr1827347602734819+intron-Distal3.104385.94978K562SAFB2
chr1827065502706628+intron-Distal,intron-Proximal3.820054.94908K562TIA1
chr1827265802726645+intron-Distal,intron-Proximal3.163886.78249K562PRPF8
chr1827141552714167+intron-Distal3.651774.91037K562EXOSC5
chr1826796642679696+intron-Distal4.061823.90241K562MATR3
chr1827666462766776+intron-Distal5.001427.47576K562KHSRP
chr1826877362687853+intron-Distal4.111324.97279K562MATR3
chr1827163392716418+intron-Distal3.8886512.27348K562EXOSC5
chr1827278452727887+intron-Distal3.002695.82594K562KHSRP
chr1827595812759608+intron-Distal3.823693.03357HepG2HNRNPC
chr1827229972723052+intron-Distal4.296324.12401HepG2U2AF2
chr1827288072728828+intron-Distal,polyA_site5.5564411.99995K562FMR1
chr1827334602733537+intron-Distal3.189575.51957K562SAFB2
chr1826651102665169+intron-Distal3.235595.31451K562KHSRP
chr1827250282725101+intron-Distal,intron-Proximal3.3623610.22136K562EFTUD2
chr1827165312716570+intron-Distal3.582127.69952K562EXOSC5
chr1827564952756590+intron-Distal3.400876.55984HepG2SUGP2
chr1827147112714791+intron-Distal3.604976.42612HepG2HNRNPM
chr1827601682760229+intron-Distal3.529755.38829K562KHSRP
chr1826657562665848+intron-Distal3.872129.72619K562KHSRP
chr1827201972720239+intron-Distal3.685563.76275K562PTBP1
chr1827295472729652+intron-Distal4.3217716.60718K562KHSRP
chr1827192302719327+intron-Distal6.9061529.17063HepG2PTBP1
chr1826589772659031+intron-Distal3.885779.01990K562HNRNPL
chr1827146592714717+intron-Distal5.2035618.09185K562EXOSC5
chr1827064942706646+intron-Distal,intron-Proximal4.9295721.02369K562PRPF8
chr1827525912752682+intron-Distal,intron-Proximal4.4747612.60106K562KHSRP
chr1827169892717021+intron-Distal6.873919.45782K562WRN
chr1827655872765677+intron-Distal4.155223.84248K562LSM11
chr1827592232759290+intron-Distal3.764996.26907HepG2SUGP2
chr1827288322728930+intron-Distal4.7837724.47235K562CSTF2T
chr1826836712683710+intron-Distal3.556916.40711K562EXOSC5
chr1828023012802322+intron-Distal4.483576.27552K562KHSRP
chr1827079912708057+intron-Distal,intron-Proximal3.232987.14496K562KHSRP
chr1827347152734760+intron-Distal3.884763.22483K562SAFB2
chr1826834652683511+intron-Distal4.542514.51309K562HNRNPM
chr1827362812736375+intron-Distal3.141976.16943K562SAFB
chr1827233522723463+intron-Distal5.4019318.07987K562HNRNPM
chr1827146972714805+intron-Distal3.553875.90941K562HNRNPM
chr1827263412726423+intron-Distal,intron-Proximal3.318213.14650K562TIA1
chr1826877412687843+intron-Distal4.5843913.62123K562PTBP1
chr1827945452794636+intron-Distal4.048883.05187HepG2QKI
chr1827585122758597+intron-Distal4.169558.05781HepG2SUGP2
chr1827148762714901+intron-Distal4.4705510.29529K562EXOSC5
chr1826783202678350+intron-Distal4.4618411.16945K562PTBP1
chr1827237202723774+intron-Distal4.047503.29248HepG2SUGP2
chr1827525952752651+intron-Distal,intron-Proximal3.816734.65388K562PRPF8
chr1827588792758987+intron-Distal3.189235.42089K562MATR3
chr1826897242689798+intron-Distal6.0568910.50400K562LIN28B
chr1826982682698367+intron-Distal3.533106.92889K562KHSRP
chr1826657382665865+intron-Distal3.356453.78824HepG2KHSRP
chr1826976642697711+intron-Distal3.329653.90146K562KHSRP
chr1827141492714203+intron-Distal3.1280711.02305K562KHSRP
chr1827139842714022+intron-Distal5.4867010.67022K562EXOSC5
chr1826968962696974+intron-Distal,intron-Proximal4.312738.55611K562KHSRP
chr1826719842672097+intron-Distal3.669358.08605K562PTBP1
chr1827058072705911+intron-Distal,intron-Proximal4.1230716.24867K562AQR
chr1827385992738643+intron-Proximal3.213834.30679K562KHSRP
chr1826971202697163+intron-Proximal5.123635.69951K562AQR
chr1827283912728441+intron-Proximal6.0166119.63584K562SF3B4
chr1827622362762285+intron-Proximal5.592938.83608K562AQR
chr1827180562718120+intron-Proximal3.228837.63715K562KHSRP
chr1827437172743758+intron-Proximal5.035846.04760K562AQR
chr1827250292725054+intron-Proximal4.1608410.16833K562KHSRP
chr1826980392698112+intron-Proximal4.421106.48405K562AQR
chr1826562722656345+intron-Proximal3.852745.99425K562CSTF2T
chr1826731982673232+intron-Proximal3.176913.20886K562PRPF8
chr1827283882728442+intron-Proximal3.006217.25876K562KHSRP
chr1827250572725087+intron-Proximal3.031465.33344K562KHSRP
chr1827005112700526+intron-Proximal4.431216.24021K562U2AF2
chr1826732262673277+intron-Proximal4.546306.11702K562SF3B4
chr1827182582718300+intron-Proximal5.311915.40008K562SF3B4
chr1827063182706354+intron-Proximal4.344498.34041K562KHSRP
chr1827062902706318+intron-Proximal3.863005.14864K562KHSRP
chr1827605972760644+intron-Proximal5.913858.42776K562SF3B4
chr1827385542738585+intron-Proximal6.5939116.98862K562AQR
chr1827076522707685+intron-Proximal4.681374.09264K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMCHD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMCHD1 is not available on ENCORE database.

  • 120 RBPs can affect the levels of SMCHD1.  








The Knockdown/knockout RNA-Seq assay for SMCHD1 is not available on ENCORE database.





120 RBPs can affect the gene expression of SMCHD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMCHD1ENSG00000101596.101911.232802525.01220-0.401804.867704.10380HepG2ACO1
SMCHD1ENSG00000101596.101795.889802517.63890-0.487402.359201.86340HepG2AKAP1
SMCHD1ENSG00000101596.101606.920202537.12690-0.6589010.641509.25870HepG2AKAP8L
SMCHD1ENSG00000101596.101369.048002083.23250-0.605704.136103.18530HepG2ASCC1
SMCHD1ENSG00000101596.102638.626203360.87210-0.349006.163205.20230HepG2AUH
SMCHD1ENSG00000101596.101007.415802042.08680-1.019406.541605.06760HepG2BCCIP
SMCHD1ENSG00000101596.101147.710301774.66800-0.628803.371502.38210HepG2BCLAF1
SMCHD1ENSG00000101596.101879.875403059.76180-0.7028011.4540010.34810HepG2BOP1
SMCHD1ENSG00000101596.102271.106102820.81970-0.312703.635502.76770HepG2CALR
SMCHD1ENSG00000101596.101533.863001979.18280-0.367702.004701.33950HepG2CIRBP
SMCHD1ENSG00000101596.101500.847602524.76580-0.7504017.9871016.61500HepG2CKAP4
SMCHD1ENSG00000101596.101481.333602384.49880-0.686804.797703.78500HepG2CNOT7
SMCHD1ENSG00000101596.101832.777302809.00070-0.616008.205307.07330HepG2CPSF6
SMCHD1ENSG00000101596.101780.248402332.23140-0.389603.826602.53080HepG2CPSF7
SMCHD1ENSG00000101596.102181.046602685.37960-0.300104.303603.53350HepG2CELF1
SMCHD1ENSG00000101596.102364.926902887.77580-0.288205.916804.89060HepG2DAZAP1
SMCHD1ENSG00000101596.101762.346702335.41360-0.406207.317306.06930HepG2DDX19B
SMCHD1ENSG00000101596.101498.072101878.13150-0.326202.849102.16240HepG2DDX21
SMCHD1ENSG00000101596.101174.397202411.91740-1.038308.547007.49800HepG2DDX3X
SMCHD1ENSG00000101596.101248.418902007.66300-0.685403.783602.89520HepG2DDX55
SMCHD1ENSG00000101596.101899.344002415.83070-0.347004.549603.71880HepG2DKC1
SMCHD1ENSG00000101596.101023.798102005.31710-0.9699028.0701026.10520HepG2DNAJC21
SMCHD1ENSG00000101596.101274.785901987.68360-0.6408018.9242017.36720HepG2DNAJC2
SMCHD1ENSG00000101596.101641.776902126.08400-0.372902.906201.96290HepG2EEF2
SMCHD1ENSG00000101596.101322.304701772.50630-0.422703.596902.32220HepG2EFTUD2
SMCHD1ENSG00000101596.101493.386601991.77060-0.415502.073701.55250HepG2EIF2S1
SMCHD1ENSG00000101596.101527.451302201.37790-0.527302.575101.95770HepG2EIF4A3
SMCHD1ENSG00000101596.102879.410203858.70030-0.422308.488607.53570HepG2ETF1
SMCHD1ENSG00000101596.102031.521102467.65650-0.280602.486901.69410HepG2EWSR1
SMCHD1ENSG00000101596.101178.877301542.46800-0.387804.197402.72820HepG2FAM120A
SMCHD1ENSG00000101596.101893.925402813.87230-0.571202.215301.31500HepG2FTO
SMCHD1ENSG00000101596.101936.689401192.135000.6999011.003309.48150HepG2FUBP3
SMCHD1ENSG00000101596.101209.456302060.10580-0.768405.713204.77100HepG2G3BP1
SMCHD1ENSG00000101596.10904.188601536.76660-0.765209.641408.02340HepG2GEMIN5
SMCHD1ENSG00000101596.101586.776802027.54470-0.353602.395001.45180HepG2GNB2L1
SMCHD1ENSG00000101596.102196.408403184.14620-0.535805.292004.42460HepG2GPKOW
SMCHD1ENSG00000101596.10980.342702024.52940-1.0462022.1619020.63580HepG2HNRNPA1
SMCHD1ENSG00000101596.102115.089402653.78780-0.327305.369104.14030HepG2HNRNPA2B1
SMCHD1ENSG00000101596.101334.032702251.93920-0.7554012.3715010.99660HepG2HNRNPC
SMCHD1ENSG00000101596.101904.248602272.71400-0.255203.023702.27580HepG2HNRNPF
SMCHD1ENSG00000101596.101801.449702630.64390-0.5463017.2866015.73390HepG2HNRNPL
SMCHD1ENSG00000101596.101991.993403038.69610-0.609207.629306.64320HepG2HNRNPLL
SMCHD1ENSG00000101596.101311.279202237.04890-0.7706023.7320022.09260HepG2HNRNPU
SMCHD1ENSG00000101596.101743.021102237.98250-0.360603.972903.11880HepG2IGF2BP1
SMCHD1ENSG00000101596.101475.639002094.18690-0.505103.051302.34700HepG2IGF2BP2
SMCHD1ENSG00000101596.101804.589302285.06720-0.340607.225606.10080HepG2ILF2
SMCHD1ENSG00000101596.101728.640002308.36580-0.417207.337605.73050HepG2KIF1C
SMCHD1ENSG00000101596.101594.123202085.81550-0.387803.235601.92410HepG2LIN28B
SMCHD1ENSG00000101596.101704.590902233.70040-0.390002.010201.46760HepG2MATR3
SMCHD1ENSG00000101596.101200.484201806.42000-0.589503.266502.12330HepG2METAP2
SMCHD1ENSG00000101596.101733.119002314.47480-0.417304.394503.38900HepG2MSI2
SMCHD1ENSG00000101596.101636.404602286.41150-0.482602.950702.29810HepG2NCBP2
SMCHD1ENSG00000101596.102186.628502863.49470-0.389104.078503.15210HepG2NOL12
SMCHD1ENSG00000101596.101863.933002214.26470-0.248503.001302.12290HepG2PARN
SMCHD1ENSG00000101596.101410.726301995.26460-0.500108.439807.20130HepG2PPIL4
SMCHD1ENSG00000101596.101386.702302733.36370-0.9790016.0954014.81960HepG2PUF60
SMCHD1ENSG00000101596.102440.740302901.47780-0.249504.764104.03010HepG2PUM1
SMCHD1ENSG00000101596.102479.591002899.42580-0.225702.230601.62600HepG2PUM2
SMCHD1ENSG00000101596.101878.503602571.93300-0.453309.128208.11660HepG2PUS1
SMCHD1ENSG00000101596.102936.448102111.529300.475707.983507.00600HepG2QKI
SMCHD1ENSG00000101596.102833.133803434.05890-0.277502.944102.06050HepG2RBM15
SMCHD1ENSG00000101596.102089.198703225.16580-0.6264011.8501010.93230HepG2RBM22
SMCHD1ENSG00000101596.102473.933201916.369400.368304.039303.23800HepG2RBM25
SMCHD1ENSG00000101596.102589.800802020.930600.357706.084405.21940HepG2RECQL
SMCHD1ENSG00000101596.101717.866902448.15030-0.511106.285605.31470HepG2RPLP0
SMCHD1ENSG00000101596.101056.320301679.38940-0.6689010.061608.97710HepG2RPS19
SMCHD1ENSG00000101596.101560.895402208.75320-0.500904.848603.80730HepG2RPS2
SMCHD1ENSG00000101596.101667.758302394.06690-0.521603.748102.81650HepG2RPS3A
SMCHD1ENSG00000101596.101019.495301532.81470-0.588302.947002.13830HepG2RRP9
SMCHD1ENSG00000101596.101546.190801992.17650-0.365606.438405.51710HepG2SAFB2
SMCHD1ENSG00000101596.101351.097301685.60920-0.319102.175201.33760HepG2SERBP1
SMCHD1ENSG00000101596.101589.639003128.28380-0.976702.757701.31670HepG2SFPQ
SMCHD1ENSG00000101596.102158.785803346.57090-0.632504.580903.56650HepG2SNRNP70
SMCHD1ENSG00000101596.102324.520502698.66850-0.215302.827402.19500HepG2SRSF5
SMCHD1ENSG00000101596.101563.878402232.83880-0.5138010.527109.32010HepG2SRSF7
SMCHD1ENSG00000101596.101957.587501723.729700.183401.925701.44910HepG2SRSF9
SMCHD1ENSG00000101596.102583.398903162.76080-0.291904.825704.18500HepG2SSB
SMCHD1ENSG00000101596.101505.317501931.03810-0.359303.164102.16470HepG2SUPT6H
SMCHD1ENSG00000101596.101169.218701998.80580-0.773604.389703.56620HepG2SUPV3L1
SMCHD1ENSG00000101596.102827.004601904.464900.5698011.8375010.80300HepG2TAF15
SMCHD1ENSG00000101596.101987.817902961.98660-0.575407.562906.44000HepG2TARDBP
SMCHD1ENSG00000101596.102276.934901749.887900.379704.500003.44200HepG2TIA1
SMCHD1ENSG00000101596.101092.194102173.61870-0.9929025.8617024.62370HepG2TIAL1
SMCHD1ENSG00000101596.101034.679502193.14840-1.0838042.2926040.42520HepG2TRIM56
SMCHD1ENSG00000101596.101646.394303356.96410-1.027802.725301.74410HepG2U2AF2
SMCHD1ENSG00000101596.10794.981601180.89830-0.570902.727401.97250HepG2UCHL5
SMCHD1ENSG00000101596.102001.768202893.48530-0.5315014.0147012.67300HepG2UPF1
SMCHD1ENSG00000101596.10951.812201830.84260-0.943804.964603.59720HepG2UPF2
SMCHD1ENSG00000101596.102373.142602974.06440-0.325605.061803.68670HepG2UTP18
SMCHD1ENSG00000101596.102194.063702793.53950-0.348506.240305.39950HepG2UTP3
SMCHD1ENSG00000101596.101540.611902144.35320-0.477003.081201.91770HepG2XPO5
SMCHD1ENSG00000101596.103102.403802236.050800.472303.079601.74310HepG2XRCC5
SMCHD1ENSG00000101596.10963.402201967.59880-1.030207.105805.95520HepG2XRN2
SMCHD1ENSG00000101596.101966.383703182.27360-0.6945029.2695027.97480HepG2ZNF622
SMCHD1ENSG00000101596.104297.236205496.11850-0.355007.777206.89400K562AGGF1
SMCHD1ENSG00000101596.103044.889203691.12510-0.277703.732701.95910K562AKAP1
SMCHD1ENSG00000101596.104529.055906039.26100-0.415204.515603.18500K562AKAP8
SMCHD1ENSG00000101596.103877.874005718.92540-0.560508.637807.41720K562AKAP8L
SMCHD1ENSG00000101596.105233.792506000.46320-0.197202.132701.33810K562ATP5C1
SMCHD1ENSG00000101596.103443.978304056.58630-0.236203.589102.49030K562BCLAF1
SMCHD1ENSG00000101596.105309.951706568.27700-0.306803.866202.44290K562CCDC124
SMCHD1ENSG00000101596.105529.103407249.07720-0.390807.873905.98240K562CPEB4
SMCHD1ENSG00000101596.102557.752703077.52520-0.266903.322802.14830K562CSTF2
SMCHD1ENSG00000101596.1013218.1469010864.160100.282804.266803.04660K562CELF1
SMCHD1ENSG00000101596.103037.966503740.05940-0.300002.669101.64400K562DDX3X
SMCHD1ENSG00000101596.102546.404303756.83760-0.561105.849403.43530K562DDX51
SMCHD1ENSG00000101596.102972.475003791.92700-0.351305.291703.27660K562DDX6
SMCHD1ENSG00000101596.105273.260006154.19320-0.222902.896001.99820K562DKC1
SMCHD1ENSG00000101596.103543.166204108.13910-0.213402.717301.52460K562EIF2S1
SMCHD1ENSG00000101596.103958.404405218.82140-0.398803.443902.65520K562EIF2S2
SMCHD1ENSG00000101596.103248.985103907.44130-0.266202.264501.51970K562EIF4A3
SMCHD1ENSG00000101596.102929.670803518.86520-0.264402.513301.43040K562EIF4B
SMCHD1ENSG00000101596.1010708.457908836.916000.277005.257503.98250K562EIF4G2
SMCHD1ENSG00000101596.103449.522405492.42810-0.6710011.347909.50910K562FIP1L1
SMCHD1ENSG00000101596.103837.913504661.60580-0.280502.729701.31240K562G3BP1
SMCHD1ENSG00000101596.106247.403304372.870700.514604.147903.24090K562G3BP2
SMCHD1ENSG00000101596.104016.070206955.31150-0.792308.120206.81370K562GRSF1
SMCHD1ENSG00000101596.102498.147403407.09570-0.447704.624103.87110K562HNRNPC
SMCHD1ENSG00000101596.105286.710406778.88440-0.358704.403903.03610K562HNRNPL
SMCHD1ENSG00000101596.103070.400504517.65250-0.557105.977504.54270K562HNRNPM
SMCHD1ENSG00000101596.104027.548404717.91600-0.228202.673901.79660K562HNRNPU
SMCHD1ENSG00000101596.105063.109407446.49360-0.556508.057806.71760K562HSPD1
SMCHD1ENSG00000101596.104831.986805809.74460-0.265902.521001.50960K562MAK16
SMCHD1ENSG00000101596.104226.205105114.22470-0.275202.776001.85080K562MATR3
SMCHD1ENSG00000101596.103971.336803417.186400.216702.077401.38320K562POLR2G
SMCHD1ENSG00000101596.103756.690906235.06720-0.7309012.6497010.50570K562PPIG
SMCHD1ENSG00000101596.102368.096303054.72560-0.367302.443901.59910K562PSIP1
SMCHD1ENSG00000101596.104009.091204978.57070-0.312503.542902.80260K562PTBP1
SMCHD1ENSG00000101596.104694.683205526.16100-0.235202.813802.21630K562RBM15
SMCHD1ENSG00000101596.103830.114704774.63840-0.318002.965502.09280K562RBM22
SMCHD1ENSG00000101596.102170.896902786.59510-0.360204.169402.94980K562RCC2
SMCHD1ENSG00000101596.103662.727704548.64630-0.312503.760602.75980K562SF3B4
SMCHD1ENSG00000101596.103267.962005202.11820-0.670703.110901.69540K562SFPQ
SMCHD1ENSG00000101596.102095.672102641.66390-0.334002.975501.90100K562SRFBP1
SMCHD1ENSG00000101596.103526.600204608.86430-0.386104.031802.72330K562SRSF5
SMCHD1ENSG00000101596.104161.560703427.488100.279903.182702.30270K562SYNCRIP
SMCHD1ENSG00000101596.102936.724304939.72950-0.7502010.114008.62850K562TARDBP
SMCHD1ENSG00000101596.103538.008804764.83570-0.429506.287304.97890K562TIA1
SMCHD1ENSG00000101596.102066.555303120.94820-0.594808.749706.85970K562TRIM56
SMCHD1ENSG00000101596.106092.861605349.338500.187703.025202.14120K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMCHD1 is not available on ENCORE database.





29 RBPs can affect the splicing of SMCHD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMCHD1ENSG00000101596.10chr18+2673015267319326668682667030267327926733620.126000.000330.03460includedHepG2G3BP1
SESMCHD1ENSG00000101596.10chr18+2800520280073827964042796519280252528029260.067000.000240.00658includedK562SRSF1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.082000.000150.00443excludedK562SRSF1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.395000.000000.00000excludedK562SF3B4
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.206000.000000.00000excludedK562SF3B4
SESMCHD1ENSG00000101596.10chr18+277573127759222772247277237027778032777913-0.121000.000310.02479excludedHepG2RBM22
SESMCHD1ENSG00000101596.10chr18+2799278279938127964042796519280252528029260.084000.000340.00836includedHepG2U2AF1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.171000.000000.00000excludedHepG2U2AF1
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.180000.000000.00001excludedHepG2U2AF1
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.294000.005380.08057excludedHepG2U2AF1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.064000.002220.05759excludedK562AKAP8L
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.084000.000100.01399excludedK562XRCC6
SESMCHD1ENSG00000101596.10chr18+2778184277823727778032777913278444727846190.096000.000260.06582includedK562PUM1
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.232000.000350.07392excludedHepG2DKC1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.176000.000000.00000excludedHepG2U2AF2
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.314000.002070.02593excludedHepG2U2AF2
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.226000.000000.00012excludedHepG2U2AF2
SESMCHD1ENSG00000101596.10chr18+2727139272725027264492726522272845427285940.109000.000010.00028includedK562AQR
SESMCHD1ENSG00000101596.10chr18+271815527182332707804270791827183122718432-0.082000.000000.00010excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+277573127759222772247277237027778032777913-0.151000.000000.00000excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.289000.000000.00000excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+275127527513912750347275050527524852752550-0.061000.000390.00549excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+270073227009162700536270065727036892703884-0.182000.000000.00000excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+274070027408192739429273951827437582743926-0.057000.000110.00180excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+266615526662312655736265626026668682667030-0.216000.000000.00000excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+276064927607372752485275255027621022762234-0.168000.000000.00000excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+275004027501202747489274764527503472750505-0.136000.000000.00000excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+272489627249932722516272266127264492726522-0.090000.000000.00006excludedK562AQR
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.158000.000030.02257excludedK562ABCF1
SESMCHD1ENSG00000101596.10chr18+2799278279938127964042796519280252528050150.079000.000020.02368includedK562KHDRBS1
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.242000.000300.07997excludedHepG2BCLAF1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.108000.000000.00009excludedK562PUS1
SESMCHD1ENSG00000101596.10chr18+267327926733622666868266703026945242694691-0.104000.001680.02613excludedK562PUS1
SESMCHD1ENSG00000101596.10chr18+276064927607372752485275255027621022762234-0.109000.000820.01451excludedK562PUS1
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.079000.000000.00161excludedK562BUD13
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.370000.000610.04160excludedHepG2FTO
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.530000.000000.00000excludedK562U2AF1
SESMCHD1ENSG00000101596.10chr18+275127527513912750347275050527524852752550-0.253000.000000.00000excludedK562U2AF1
SESMCHD1ENSG00000101596.10chr18+270073227009162700536270065727036892703884-0.121000.000140.00454excludedK562U2AF1
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.117000.000020.00081excludedK562U2AF1
SESMCHD1ENSG00000101596.10chr18+272489627249932722516272266127264492726522-0.066000.002770.05180excludedK562U2AF1
SESMCHD1ENSG00000101596.10chr18+2778166277823727778032777913278444727846190.053000.000070.03245includedK562PPIL4
SESMCHD1ENSG00000101596.10chr18+2800520280073827964042796519280252528029260.087000.000740.02003includedHepG2SRSF1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.177000.000010.00051excludedHepG2SRSF1
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.199000.004500.08177excludedHepG2SRSF1
SESMCHD1ENSG00000101596.10chr18+277573127759222772247277237027778032777913-0.116000.002470.06160excludedHepG2SF3A3
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.170000.000000.00000excludedHepG2SF3A3
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.119000.000060.00326excludedHepG2SF3A3
SESMCHD1ENSG00000101596.10chr18+2778184277823727778032777913278444727846190.104000.000290.05015includedK562EIF4G2
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.474000.000000.00000excludedK562U2AF2
SESMCHD1ENSG00000101596.10chr18+275127527513912750347275050527524852752550-0.213000.000000.00000excludedK562U2AF2
SESMCHD1ENSG00000101596.10chr18+277573127759222772247277237027778032777913-0.073000.004340.06474excludedK562U2AF2
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.167000.000000.00000excludedK562U2AF2
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.126000.000400.00927excludedK562U2AF2
SESMCHD1ENSG00000101596.10chr18+277573127759222772247277237027778032777913-0.060000.001190.04325excludedK562TARDBP
SESMCHD1ENSG00000101596.10chr18+277818427782372777803277791327844472784619-0.180000.002070.06504excludedK562TARDBP
SESMCHD1ENSG00000101596.10chr18+266615526662312655736265626026668682667030-0.089000.003500.09663excludedK562HNRNPU
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.100000.000010.00052excludedK562RBM15
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.069000.001050.02882excludedK562AGGF1
SESMCHD1ENSG00000101596.10chr18+276064927607372752485275255027621022762234-0.123000.000330.01149excludedK562AGGF1
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.060000.002800.06054excludedK562AGGF1
SESMCHD1ENSG00000101596.10chr18+276064927607372752485275255027621022762234-0.202000.000210.01202excludedK562SF3B1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.098000.000030.00255excludedK562SF3B1
SESMCHD1ENSG00000101596.10chr18+275004027501202747519274764527503472750505-0.122000.000000.00024excludedK562SF3B1
SESMCHD1ENSG00000101596.10chr18+277816627782372777803277791327844472784619-0.083000.000220.01460excludedK562HNRNPK
SESMCHD1ENSG00000101596.10chr18+272251627226612718312271843227248962724993-0.119000.001630.05866excludedK562PTBP1
SESMCHD1ENSG00000101596.10chr18+2799278279938127964042796519280252528029260.051000.000090.00248includedK562HNRNPC
A3SSSMCHD1ENSG00000101596.10chr18+274375827439262743804274392627407002740819-0.065000.002120.06865shorterK562U2AF2
A3SSSMCHD1ENSG00000101596.10chr18+275127527513912751302275139127503662750505-0.174000.000010.00031shorterHepG2U2AF2
A3SSSMCHD1ENSG00000101596.10chr18+2728401272859427284542728594272644927265220.056000.006100.03442longerK562AQR
A3SSSMCHD1ENSG00000101596.10chr18+2751242275139127512752751391275043027505050.106000.000000.00001longerK562AQR
A3SSSMCHD1ENSG00000101596.10chr18+2772223277237027722472772370277153027716160.055000.000040.00037longerK562AQR
A3SSSMCHD1ENSG00000101596.10chr18+2739403273951827394292739518273829727385430.073000.000000.00000longerK562AQR
A3SSSMCHD1ENSG00000101596.10chr18+2697003269712026970292697120269452426946910.113000.000000.00000longerK562AQR
A3SSSMCHD1ENSG00000101596.10chr18+2762080276223427621022762234276064927607370.085000.000000.00000longerK562AQR
A3SSSMCHD1ENSG00000101596.10chr18+2707780270791827078042707918270756027076430.150000.000000.00001longerK562AQR
A5SSSMCHD1ENSG00000101596.10chr18+280052028007382800520280073428025252805015-0.367000.003420.05280shorterK562AQR
MXESMCHD1ENSG00000101596.10chr18+279927827993812800520280073427964042796519280252528029260.504000.001970.035951includedHepG2U2AF1
MXESMCHD1ENSG00000101596.10chr18+279927827993812800520280073827964042796519280252528029260.446000.004980.072211includedHepG2U2AF1
MXESMCHD1ENSG00000101596.10chr18+27225162722661272489627249932718312271843227264492726522-0.158000.001560.047462includedK562PTBP1
MXESMCHD1ENSG00000101596.10chr18+27992782799381280052028007342796404279651928025252805015-0.406000.000050.003002includedK562PTBP1
MXESMCHD1ENSG00000101596.10chr18+27992782799381280052028007382796404279651928025252805015-0.421000.000010.000852includedK562PTBP1
MXESMCHD1ENSG00000101596.10chr18+27992782799381280052028007342796404279651928025252802926-0.389000.000000.000072includedK562SRSF1
MXESMCHD1ENSG00000101596.10chr18+27992782799381280052028007382796404279651928025252802926-0.407000.000000.000022includedK562SRSF1
MXESMCHD1ENSG00000101596.10chr18+277780327779132778166277823727757312775922278444727846190.158000.000020.000271includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+277780327779132784447278461927722472772370279594627961050.104000.000000.000001includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+271812527182332718312271843227078042707918272251627225480.056000.001930.016151includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+277776227779132778166277823727757312775922278444727846190.326000.000000.000001includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+272251627226612724896272499327181552718233272644927265220.093000.000000.000021includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+27181552718233271831227184322707804270791827225162722661-0.133000.003250.025092includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+27181552718233271831227184322707804270791827248962724993-0.159000.000000.000002includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+27524852752550276208027622342751275275139127636342763787-0.123000.001680.014322includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+27781662778237278444727845672777803277791327959462796105-0.264000.000000.000002includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+27781662778237278444727846192777803277791327959462796105-0.150000.000010.000192includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+27007322700916270368927037482700536270065727056912705805-0.174000.000000.000052includedK562AQR
MXESMCHD1ENSG00000101596.10chr18+276064927607372762102276223427524852752550276363427637870.117000.002470.032781includedK562U2AF2
MXESMCHD1ENSG00000101596.10chr18+27992782799381280052028007382796404279651928025252805015-0.283000.003940.092392includedHepG2SF3A3
MXESMCHD1ENSG00000101596.10chr18+27394292739518274070027408192738394273854327437582743926-0.121000.000400.018092includedK562SBDS
MXESMCHD1ENSG00000101596.10chr18+279927827993812800520280073827964042796519280252528029260.382000.007830.098981includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMCHD1 is not avaliable on ENCORE database.