SMIM15

General Information

Gene Name       : SMIM15
Gene ID             : ENSG00000188725.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMIM15)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMIM15ENSG00000188725.766.6456.7161.67ENCSR000AEF
HepG2SMIM15ENSG00000188725.749.0042.6545.83ENCSR985KAT
K562SMIM15ENSG00000188725.790.0983.2186.65ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMIM15 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMIM15 RNA is bound by 10 proteins.  







eCLIP assay for SMIM15 is not avaliable on ENCORE database.





10 proteins are bound to SMIM15 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr56045691960456998-3'-UTR,5'-UTR,intron-Distal3.082723.60157HepG2GRWD1
chr56045691460456938-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.393184.49055K562YBX3
chr56045693860457002-3'-UTR,5'-UTR,intron-Distal4.0724212.32818K562YBX3
chr56045692060456988-3'-UTR,5'-UTR,intron-Distal3.246824.89070K562UCHL5
chr56045697660457043-3'-UTR,5'-UTR,intron-Distal3.033955.96481K562DDX3X
chr56045377260453843-3'-UTR,intron-Distal4.436165.29390K562TARDBP
chr56045593560456008-3'-UTR,5'-UTR,CDS,intron-Distal3.321143.91115K562LIN28B
chr56045700260457043-3'-UTR,5'-UTR,intron-Distal3.076883.69775K562YBX3
chr56045501460455077-3'-UTR,intron-Distal4.191564.50986K562IGF2BP1
chr56045699660457055-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.9295739.62434K562PUM2
chr56045808060458278-5'-UTR,intron-Distal,intron-Proximal4.1191423.51144K562DDX3X
chr56045804360458265-5'-UTR,intron-Distal,intron-Proximal4.7635322.72633HepG2DDX3X
chr56045804360458081-5'-UTR,intron-Distal,intron-Proximal5.1132911.82794K562PUM2
chr56045814960458229-5'-UTR,intron-Distal,intron-Proximal4.798865.00258K562FTO
chr56045813260458273-5'-UTR,intron-Distal,intron-Proximal4.937147.22444HepG2NCBP2
chr56045804360458080-5'-UTR,intron-Distal,intron-Proximal3.615706.73521K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMIM15 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMIM15 is not available on ENCORE database.

  • 80 RBPs can affect the levels of SMIM15.  








The Knockdown/knockout RNA-Seq assay for SMIM15 is not available on ENCORE database.





80 RBPs can affect the gene expression of SMIM15 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMIM15ENSG00000188725.3581.86760710.97660-0.289102.386101.81470HepG2ACO1
SMIM15ENSG00000188725.3865.256801096.17880-0.341301.793001.35480HepG2AKAP1
SMIM15ENSG00000188725.3561.93510714.27600-0.346102.993302.19930HepG2AKAP8L
SMIM15ENSG00000188725.3799.770901019.13980-0.349703.608402.84190HepG2AUH
SMIM15ENSG00000188725.3283.84230530.36320-0.901905.519304.43410HepG2CNOT7
SMIM15ENSG00000188725.3580.16630791.65340-0.448403.093502.37150HepG2CPSF6
SMIM15ENSG00000188725.3672.36170498.446300.431703.132702.15890HepG2DDX24
SMIM15ENSG00000188725.3812.95100595.565700.448802.790701.49670HepG2DDX27
SMIM15ENSG00000188725.3716.89000422.379100.763106.956505.57920HepG2EIF3D
SMIM15ENSG00000188725.3635.50960481.101400.401502.758901.67860HepG2EIF3G
SMIM15ENSG00000188725.31298.84600933.022700.477102.803902.11050HepG2EIF4B
SMIM15ENSG00000188725.31444.283101170.123800.303603.365502.71230HepG2ETF1
SMIM15ENSG00000188725.3317.71770508.39360-0.678203.703402.80130HepG2FUBP3
SMIM15ENSG00000188725.3770.77070966.83950-0.327001.901101.32280HepG2FXR1
SMIM15ENSG00000188725.3652.04120896.92720-0.460003.057002.35880HepG2G3BP1
SMIM15ENSG00000188725.3475.71320897.46760-0.915805.124804.27130HepG2GPKOW
SMIM15ENSG00000188725.3511.93040664.87610-0.377102.304101.66600HepG2HNRNPC
SMIM15ENSG00000188725.3506.95000723.49320-0.513105.521004.55050HepG2HNRNPF
SMIM15ENSG00000188725.3339.15300517.31280-0.609104.056102.92440HepG2HNRNPM
SMIM15ENSG00000188725.3517.62000660.48240-0.351601.846601.34220HepG2HNRNPU
SMIM15ENSG00000188725.3310.95610674.66560-1.1175019.5803017.83410HepG2ILF2
SMIM15ENSG00000188725.3758.64020606.886100.321902.349201.60110HepG2MSI2
SMIM15ENSG00000188725.3739.19540995.52360-0.429502.768002.13510HepG2NCBP2
SMIM15ENSG00000188725.3578.93090886.62700-0.614905.138504.16730HepG2PABPC4
SMIM15ENSG00000188725.3359.77740479.87180-0.415503.075402.26580HepG2PRPF4
SMIM15ENSG00000188725.3674.77660858.62830-0.347603.151002.57470HepG2PTBP1
SMIM15ENSG00000188725.31144.55150952.683600.264602.191301.65120HepG2PUM1
SMIM15ENSG00000188725.3541.33260724.16860-0.419804.438703.69390HepG2PUS1
SMIM15ENSG00000188725.3651.63600929.93120-0.513105.608204.76490HepG2QKI
SMIM15ENSG00000188725.3922.40040568.615600.697803.816402.99280HepG2RAVER1
SMIM15ENSG00000188725.3675.96120978.00380-0.532906.717705.99500HepG2RBM22
SMIM15ENSG00000188725.3762.54730955.57690-0.325502.996902.43810HepG2NELFE
SMIM15ENSG00000188725.3289.35480412.49270-0.511502.765701.82650HepG2SERBP1
SMIM15ENSG00000188725.3385.56930947.13160-1.296604.331802.44680HepG2SFPQ
SMIM15ENSG00000188725.3526.10920685.97360-0.382803.840503.10290HepG2SMN1
SMIM15ENSG00000188725.31214.23080933.091200.379904.329803.77040HepG2SRSF1
SMIM15ENSG00000188725.3509.05180912.09230-0.841406.846605.21750HepG2SRSF3
SMIM15ENSG00000188725.3541.36140710.79830-0.392803.435002.67150HepG2SRSF7
SMIM15ENSG00000188725.3868.34280633.621200.454502.975702.27810HepG2SUPV3L1
SMIM15ENSG00000188725.3531.05580647.51250-0.286002.211901.69630HepG2TRIM56
SMIM15ENSG00000188725.3635.94690927.92960-0.545103.982902.96810HepG2UBE2L3
SMIM15ENSG00000188725.3272.32650374.31730-0.458902.180501.50570HepG2UCHL5
SMIM15ENSG00000188725.3589.55550721.99330-0.292402.267801.30620HepG2UTP18
SMIM15ENSG00000188725.3637.00510772.51970-0.278302.534702.00500HepG2ZNF622
SMIM15ENSG00000188725.31371.077401017.231700.430604.078002.61310K562AARS
SMIM15ENSG00000188725.31699.224301297.297600.389305.581704.81990K562AGGF1
SMIM15ENSG00000188725.31812.356602511.25620-0.470502.976902.37160K562AQR
SMIM15ENSG00000188725.31047.733101387.47910-0.405205.769304.36910K562BCLAF1
SMIM15ENSG00000188725.3328.73870486.01820-0.564103.956102.64690K562CCAR1
SMIM15ENSG00000188725.31038.998102099.77730-1.015008.652306.74650K562CNOT7
SMIM15ENSG00000188725.3698.170201402.22660-1.0061011.469009.85650K562CPSF6
SMIM15ENSG00000188725.3855.038401052.60960-0.299902.368801.40160K562CSTF2
SMIM15ENSG00000188725.3830.003301030.37840-0.312002.400401.43290K562DDX3X
SMIM15ENSG00000188725.32862.922902278.752700.329105.414804.54750K562DDX47
SMIM15ENSG00000188725.31648.964902076.03050-0.332301.980601.35400K562EIF2S2
SMIM15ENSG00000188725.3874.913601076.46420-0.299102.102301.38170K562EIF4A3
SMIM15ENSG00000188725.31185.014201711.85350-0.530705.961004.68170K562FIP1L1
SMIM15ENSG00000188725.31028.856001426.62980-0.471604.361903.28680K562FMR1
SMIM15ENSG00000188725.31689.159501119.472800.5934010.889709.77560K562FXR1
SMIM15ENSG00000188725.31581.746801146.713100.463903.067302.31650K562G3BP2
SMIM15ENSG00000188725.3754.224501338.82370-0.827908.325306.94100K562GPKOW
SMIM15ENSG00000188725.32192.694202766.81700-0.335502.016001.36460K562GRSF1
SMIM15ENSG00000188725.3652.547501113.25360-0.7706010.567509.46250K562HNRNPC
SMIM15ENSG00000188725.3688.48580994.04970-0.529905.193703.56320K562HNRNPF
SMIM15ENSG00000188725.31520.823202059.32510-0.437305.084603.60080K562HNRNPL
SMIM15ENSG00000188725.3813.874801306.82350-0.683207.512406.03830K562METAP2
SMIM15ENSG00000188725.31273.885601613.23630-0.340704.763003.72480K562MTPAP
SMIM15ENSG00000188725.31515.311701124.904400.429702.588701.74090K562NAA15
SMIM15ENSG00000188725.31228.066101792.55080-0.5456012.4889011.06270K562NSUN2
SMIM15ENSG00000188725.3827.606801095.97070-0.405202.764401.34930K562NUSAP1
SMIM15ENSG00000188725.3762.686801125.41080-0.561304.777203.68660K562PCBP3
SMIM15ENSG00000188725.3828.228901086.81420-0.392003.161501.61820K562PHF6
SMIM15ENSG00000188725.31586.568101943.22510-0.292502.209901.48000K562PPIG
SMIM15ENSG00000188725.31611.210601104.208800.545005.883704.78760K562PRPF8
SMIM15ENSG00000188725.3648.36210998.12430-0.622406.102604.68210K562PSIP1
SMIM15ENSG00000188725.32021.329601338.830700.594206.978706.16200K562PUS1
SMIM15ENSG00000188725.31679.486901304.389500.364504.133503.42490K562RBM15
SMIM15ENSG00000188725.3602.58940910.54220-0.595606.333404.83700K562RCC2
SMIM15ENSG00000188725.31414.564301124.942000.330402.210601.48390K562RPS19
SMIM15ENSG00000188725.31339.254401768.64090-0.401205.803404.65580K562SF3A3
SMIM15ENSG00000188725.3711.495101517.50920-1.092806.339504.03830K562SFPQ
SMIM15ENSG00000188725.3450.09750863.18180-0.9394011.920109.40400K562SRFBP1
SMIM15ENSG00000188725.3999.389301237.84040-0.308702.885201.69010K562SRSF7
SMIM15ENSG00000188725.31371.32240865.825200.6633010.205208.62390K562SYNCRIP
SMIM15ENSG00000188725.31101.182101390.09180-0.336103.074302.20350K562TIA1
SMIM15ENSG00000188725.3627.66100960.04280-0.613105.347204.00700K562TIAL1
SMIM15ENSG00000188725.3610.193701019.79090-0.740909.055407.12590K562TRIM56
SMIM15ENSG00000188725.31570.823602002.77590-0.350502.731801.36140K562TRIP6
SMIM15ENSG00000188725.32795.070803556.02650-0.347403.247401.71440K562UBE2L3
SMIM15ENSG00000188725.31546.127401900.67170-0.297903.997903.14830K562UPF1
SMIM15ENSG00000188725.31143.243201626.35770-0.508505.271904.04350K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMIM15 is not available on ENCORE database.





5 RBPs can affect the splicing of SMIM15 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMIM15ENSG00000188725.3chr5-604580436045818660456914604570546045827260458295-0.203000.000110.00654excludedK562PRPF8
SESMIM15ENSG00000188725.3chr5-604580436045818660456914604570546045827260458295-0.063000.000020.01295excludedK562PUM1
SESMIM15ENSG00000188725.3chr5-6045804360458186604569146045705460458272604582950.089000.000000.00091includedK562ABCF1
SESMIM15ENSG00000188725.3chr5-604580436045818660456914604570546045827260458295-0.081000.000000.00306excludedK562APOBEC3C
SESMIM15ENSG00000188725.3chr5-604580436045818660456914604570546045827260458295-0.071000.007020.09008excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMIM15 is not avaliable on ENCORE database.