SCLT1

General Information

Gene Name       : SCLT1
Gene ID             : ENSG00000151466.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCLT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCLT1ENSG00000151466.1113.3311.8012.57ENCSR000AEF
HepG2SCLT1ENSG00000151466.112.684.773.72ENCSR985KAT
K562SCLT1ENSG00000151466.1113.7716.2715.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCLT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCLT1 RNA is bound by 18 proteins.  







eCLIP assay for SCLT1 is not avaliable on ENCORE database.





18 proteins are bound to SCLT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4130014605130014670-5'-UTR,intron-Distal,intron-Proximal4.171314.15208K562RBM15
chr4130014274130014332-5'-UTR,intron-Distal3.612694.22460K562RBM15
chr4130014305130014394-5'-UTR,intron-Distal3.118983.73997K562ZNF622
chr4130014577130014679-5'-UTR,intron-Distal,intron-Proximal5.091694.97000K562DDX3X
chr4130003449130003531-5'-UTR,CDS,intron-Distal,intron-Proximal3.144365.11643K562ZNF622
chr4130014340130014370-5'-UTR,intron-Distal5.3672810.03208K562RBM15
chr4130014370130014384-5'-UTR,intron-Distal5.156858.28112K562RBM15
chr4129867159129867308-CDS,intron-Distal,intron-Proximal4.661095.50697K562UCHL5
chr4130003364130003472-CDS,intron-Distal,intron-Proximal4.547797.35008K562PRPF8
chr4129965143129965207-CDS,intron-Distal,intron-Proximal3.039303.41227K562UCHL5
chr4129964547129964623-CDS,intron-Distal,intron-Proximal3.650844.51739HepG2BCLAF1
chr4129940584129940645-intron-Distal3.776544.83406HepG2QKI
chr4129935697129935800-intron-Distal3.909843.04254K562UCHL5
chr4129943183129943266-intron-Distal3.381963.39827HepG2MATR3
chr4130002977130003043-intron-Distal3.416055.20123K562KHSRP
chr4129984873129984937-intron-Distal3.896713.25633K562PPIL4
chr4129984782129984864-intron-Distal3.143164.05044K562PPIL4
chr4129987618129987697-intron-Distal3.313807.63715K562KHSRP
chr4129952022129952088-intron-Distal3.846056.10949K562EXOSC5
chr4129964368129964491-intron-Distal,intron-Proximal3.479464.13575K562KHSRP
chr4129903122129903203-intron-Distal3.461843.27944K562PTBP1
chr4129954946129955042-intron-Distal4.758716.80456K562KHSRP
chr4129951688129951730-intron-Distal4.706985.44508K562EXOSC5
chr4129894500129894659-intron-Distal4.389438.82626HepG2PCBP2
chr4129951214129951260-intron-Distal3.410703.43829K562EXOSC5
chr4129976931129976956-intron-Distal3.170813.84692K562UCHL5
chr4129976662129976736-intron-Distal3.638953.12651K562SAFB2
chr4129966062129966145-intron-Distal3.157534.76345K562KHSRP
chr4130000561130000634-intron-Distal3.153655.60196K562PPIL4
chr4129935714129935780-intron-Distal3.961473.54264K562SAFB2
chr4129951159129951214-intron-Distal4.045075.80877K562EXOSC5
chr4130008266130008360-intron-Distal4.354304.75674K562MATR3
chr4129976956129976977-intron-Distal3.140113.84692K562UCHL5
chr4129936709129936812-intron-Distal4.647316.48449K562SAFB2
chr4130010252130010302-intron-Distal4.338503.89080K562EXOSC5
chr4129989106129989220-intron-Distal3.940174.84244K562XRCC6
chr4129989107129989230-intron-Distal4.477745.63023K562SAFB2
chr4129955258129955321-intron-Distal4.217476.89837K562KHSRP
chr4129977950129978061-intron-Distal3.978803.28334K562HLTF
chr4129936734129936826-intron-Distal4.528925.14565K562UCHL5
chr4129994515129994642-intron-Distal3.974023.33164K562SAFB2
chr4129925540129925679-intron-Distal4.628874.58794K562KHSRP
chr4129967199129967277-intron-Distal4.555504.07352K562KHSRP
chr4129988030129988109-intron-Distal3.053595.39758K562KHSRP
chr4129977937129978052-intron-Distal3.961883.91527K562PPIL4
chr4129987807129987871-intron-Distal3.167873.76473K562KHSRP
chr4129929057129929151-intron-Distal3.059904.58292K562SAFB2
chr4129944091129944189-intron-Distal4.566604.80399K562EXOSC5
chr4129997059129997115-intron-Distal3.217493.92844K562PPIL4
chr4129936829129936929-intron-Distal4.042773.86679K562SAFB2
chr4129898695129898830-intron-Distal5.9672813.55741K562PTBP1
chr4129984104129984195-intron-Distal3.855323.01412K562SAFB2
chr4129953161129953227-intron-Distal3.290545.29801K562EXOSC5
chr4129987091129987154-intron-Distal3.242493.68839K562KHSRP
chr4129897849129897978-intron-Distal4.461847.59321K562PTBP1
chr4129940587129940655-intron-Distal5.135605.61339K562QKI
chr4130003364130003440-intron-Distal,intron-Proximal3.213143.80983K562TIA1
chr4129828481129828606-intron-Distal3.926323.50357HepG2QKI
chr4129987233129987299-intron-Distal3.601235.35459K562KHSRP
chr4129944254129944310-intron-Distal3.058033.35050HepG2SUGP2
chr4129987531129987618-intron-Distal3.968515.95946K562KHSRP
chr4129994870129994934-intron-Distal3.807483.70663K562PPIL4
chr4129955370129955503-intron-Distal5.4034612.41115K562KHSRP
chr4129952782129952818-intron-Distal4.461533.30687K562EXOSC5
chr4130007891130008023-intron-Distal3.557714.26619K562MATR3
chr4129944058129944170-intron-Distal4.063243.62238HepG2MATR3
chr4129966496129966589-intron-Distal3.138013.76473K562KHSRP
chr4129976927129976977-intron-Distal4.010984.51328K562SAFB2
chr4129911884129911960-intron-Distal4.546025.44433K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCLT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCLT1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of SCLT1.  








The Knockdown/knockout RNA-Seq assay for SCLT1 is not available on ENCORE database.





80 RBPs can affect the gene expression of SCLT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCLT1ENSG00000151466.736.20950109.36910-1.594806.325905.16180HepG2ASCC1
SCLT1ENSG00000151466.749.63770119.05760-1.262204.511003.38740HepG2BCLAF1
SCLT1ENSG00000151466.765.02530199.92040-1.6204010.904809.81860HepG2BOP1
SCLT1ENSG00000151466.766.34640125.72420-0.922204.027703.25420HepG2CKAP4
SCLT1ENSG00000151466.767.56550183.54380-1.441806.907905.85940HepG2CPSF6
SCLT1ENSG00000151466.7130.28340202.00860-0.632803.116102.44170HepG2CELF1
SCLT1ENSG00000151466.7149.00920217.21350-0.543702.846602.09520HepG2DAZAP1
SCLT1ENSG00000151466.756.8791098.45430-0.791602.303301.67690HepG2DDX21
SCLT1ENSG00000151466.764.06620126.61870-0.982903.427102.73970HepG2DDX3X
SCLT1ENSG00000151466.799.72400208.42550-1.063503.255202.19690HepG2DDX59
SCLT1ENSG00000151466.734.65920108.77450-1.650006.210005.31410HepG2DDX6
SCLT1ENSG00000151466.773.07320119.80800-0.713302.448401.78220HepG2DNAJC21
SCLT1ENSG00000151466.777.12580118.74390-0.622602.047301.46990HepG2DNAJC2
SCLT1ENSG00000151466.743.34290104.56120-1.270504.250103.52420HepG2EIF2S1
SCLT1ENSG00000151466.770.71370115.54930-0.708402.029201.47900HepG2EIF4A3
SCLT1ENSG00000151466.792.60900205.27730-1.148406.816905.56540HepG2EIF4G2
SCLT1ENSG00000151466.799.08740183.84600-0.891702.320501.39670HepG2FTO
SCLT1ENSG00000151466.788.73130208.07750-1.229606.614905.65380HepG2GPKOW
SCLT1ENSG00000151466.768.38170120.95570-0.822802.543901.92150HepG2HNRNPA1
SCLT1ENSG00000151466.7127.48250199.62320-0.647003.128702.14230HepG2HNRNPA2B1
SCLT1ENSG00000151466.777.56740134.53880-0.794502.611701.93610HepG2HNRNPC
SCLT1ENSG00000151466.783.41210136.05010-0.705802.418501.74480HepG2HNRNPF
SCLT1ENSG00000151466.762.94410109.52610-0.799102.232101.60000HepG2HNRNPK
SCLT1ENSG00000151466.770.22540197.86620-1.4945011.7411010.43790HepG2HNRNPL
SCLT1ENSG00000151466.790.47520198.57070-1.134105.804204.92680HepG2HNRNPLL
SCLT1ENSG00000151466.770.53730133.64950-0.922004.195103.46190HepG2HNRNPU
SCLT1ENSG00000151466.776.10760133.97370-0.815802.819502.08800HepG2IGF2BP1
SCLT1ENSG00000151466.786.12910136.51890-0.664502.859802.11660HepG2ILF2
SCLT1ENSG00000151466.7128.16740265.85210-1.052606.213404.96010HepG2LARP4
SCLT1ENSG00000151466.7207.74310117.285800.824703.455002.75660HepG2MATR3
SCLT1ENSG00000151466.7141.23260215.38820-0.608902.999002.20560HepG2NOL12
SCLT1ENSG00000151466.787.23180176.05900-1.013104.394703.45710HepG2NSUN2
SCLT1ENSG00000151466.763.51220113.97970-0.843702.621501.61000HepG2PCBP2
SCLT1ENSG00000151466.787.96670205.60560-1.224907.695806.76860HepG2PUF60
SCLT1ENSG00000151466.798.37250218.09940-1.148707.540006.45640HepG2PUM2
SCLT1ENSG00000151466.749.26360146.51250-1.572407.857106.79700HepG2RPLP0
SCLT1ENSG00000151466.744.22390196.55520-2.1520015.5303013.99910HepG2SF3B1
SCLT1ENSG00000151466.7125.01480197.14060-0.657103.304902.54870HepG2SLBP
SCLT1ENSG00000151466.791.48820138.80180-0.601402.188401.60550HepG2SMN1
SCLT1ENSG00000151466.772.05800218.69870-1.601708.801607.41490HepG2SNRNP70
SCLT1ENSG00000151466.764.13870206.37880-1.686004.293803.70910HepG2SRFBP1
SCLT1ENSG00000151466.7265.51700122.895601.111308.342307.62190HepG2SRSF1
SCLT1ENSG00000151466.7126.98580211.46730-0.735802.701801.71250HepG2SRSF3
SCLT1ENSG00000151466.7101.69200203.00380-0.997306.285805.39590HepG2SRSF5
SCLT1ENSG00000151466.778.23530133.65390-0.772602.751402.05670HepG2SRSF7
SCLT1ENSG00000151466.744.9560099.98210-1.153204.399203.73340HepG2SRSF9
SCLT1ENSG00000151466.7165.33610230.87270-0.481702.388801.80280HepG2SUCLG1
SCLT1ENSG00000151466.757.46980111.65660-0.958202.918001.95310HepG2SUPT6H
SCLT1ENSG00000151466.742.13890134.09780-1.670106.670605.69200HepG2SUPV3L1
SCLT1ENSG00000151466.786.23460193.50170-1.166006.286505.25390HepG2TARDBP
SCLT1ENSG00000151466.734.6023089.88750-1.377304.601503.36420HepG2TFIP11
SCLT1ENSG00000151466.738.30610129.87310-1.761509.901909.05960HepG2TIAL1
SCLT1ENSG00000151466.770.27430131.02580-0.898804.084903.42700HepG2TRIM56
SCLT1ENSG00000151466.7135.94840200.86550-0.563202.249901.46800HepG2TUFM
SCLT1ENSG00000151466.743.48170209.73770-2.270107.700205.96830HepG2U2AF2
SCLT1ENSG00000151466.769.89720116.39940-0.735802.598801.91830HepG2UPF1
SCLT1ENSG00000151466.769.80820128.01660-0.874903.798403.18500HepG2ZNF622
SCLT1ENSG00000151466.7783.55810921.99620-0.234701.834401.35290K562AGGF1
SCLT1ENSG00000151466.7694.86540959.36670-0.465304.093303.29630K562AKAP8L
SCLT1ENSG00000151466.7566.702401092.03010-0.9463012.2767011.16770K562AQR
SCLT1ENSG00000151466.7831.741901006.58350-0.275302.277201.45580K562ATP5C1
SCLT1ENSG00000151466.7765.745201032.42370-0.431105.086403.84720K562DKC1
SCLT1ENSG00000151466.7342.62110474.55640-0.470002.520801.65230K562EFTUD2
SCLT1ENSG00000151466.7349.07630563.76590-0.691606.169404.95330K562EIF4A3
SCLT1ENSG00000151466.71176.567401444.13210-0.295602.611101.69570K562EIF4G2
SCLT1ENSG00000151466.7367.99930492.12120-0.419302.621601.36860K562EWSR1
SCLT1ENSG00000151466.7424.37780658.42990-0.633705.618104.49090K562GPKOW
SCLT1ENSG00000151466.7854.395301044.87910-0.290402.010601.36050K562GRSF1
SCLT1ENSG00000151466.7666.425201021.54290-0.616207.207905.42170K562HNRNPL
SCLT1ENSG00000151466.7624.24630779.73530-0.320902.536701.67980K562HNRNPU
SCLT1ENSG00000151466.7773.276101018.17060-0.396903.605702.64800K562KIF1C
SCLT1ENSG00000151466.7378.73300562.20120-0.569903.067802.07850K562KRR1
SCLT1ENSG00000151466.7543.83560750.51490-0.464703.890902.88610K562MAGOH
SCLT1ENSG00000151466.7491.04890642.69850-0.388302.600201.75520K562METAP2
SCLT1ENSG00000151466.7578.15350799.47580-0.467602.554501.71430K562NAA15
SCLT1ENSG00000151466.7403.00290780.45760-0.953505.044603.59590K562PABPN1
SCLT1ENSG00000151466.7667.80500492.549000.439103.400402.50550K562POLR2G
SCLT1ENSG00000151466.7394.01190533.30450-0.436702.494201.64110K562PSIP1
SCLT1ENSG00000151466.71103.274601575.67380-0.514205.488804.34190K562PUF60
SCLT1ENSG00000151466.7778.49300951.51580-0.289501.846701.38500K562PUS1
SCLT1ENSG00000151466.7611.12050927.03640-0.601207.549506.59970K562RBM15
SCLT1ENSG00000151466.7490.63990699.22810-0.511104.163203.10740K562RBM22
SCLT1ENSG00000151466.7431.68890713.77970-0.725502.634101.47440K562SF1
SCLT1ENSG00000151466.7436.90240626.16820-0.519203.189002.14250K562SF3B1
SCLT1ENSG00000151466.7370.28630592.97310-0.679307.100905.69200K562SF3B4
SCLT1ENSG00000151466.7451.81800819.68360-0.859303.931502.37390K562SNRNP200
SCLT1ENSG00000151466.7456.77860723.46090-0.663406.078004.99820K562TARDBP
SCLT1ENSG00000151466.7369.03670512.94460-0.475002.741101.80940K562TIAL1
SCLT1ENSG00000151466.7419.63110544.98450-0.377102.296401.44700K562TRIM56
SCLT1ENSG00000151466.7397.24740552.78560-0.476702.712401.63320K562U2AF1
SCLT1ENSG00000151466.7327.78610570.87740-0.800408.984807.52830K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCLT1 is not available on ENCORE database.





5 RBPs can affect the splicing of SCLT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCLT1ENSG00000151466.7chr4-1299574321299574771299248951299250311299601951299602510.148000.000580.00776includedK562AQR
SESCLT1ENSG00000151466.7chr4-1299977491299978121299651471299652061300034601300035280.075000.000040.02721includedK562ABCF1
SESCLT1ENSG00000151466.7chr4-129864150129864343129857809129858006129867161129867307-0.134000.008760.09513excludedK562PUS1
SESCLT1ENSG00000151466.7chr4-1299977491299978121299651471299652061300034601300035280.073000.000250.04195includedK562HNRNPM
A3SSSCLT1ENSG00000151466.7chr4-1298807541298809651298807541298809321298863811298864890.089000.000980.00680longerK562AQR
RISCLT1ENSG00000151466.7chr4-130014224130014565130014224130014322130014400130014565-0.073000.010480.08053excludedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCLT1 is not avaliable on ENCORE database.