CHMP3

General Information

Gene Name       : CHMP3
Gene ID             : ENSG00000115561.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHMP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHMP3ENSG00000115561.1539.2538.6538.95ENCSR000AEF
HepG2CHMP3ENSG00000115561.15119.25136.42127.83ENCSR985KAT
K562CHMP3ENSG00000115561.1535.9235.3435.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHMP3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHMP3 RNA is bound by 21 proteins.  







eCLIP assay for CHMP3 is not avaliable on ENCORE database.





21 proteins are bound to CHMP3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr28675644386756521-3'-UTR,CDS,intron-Distal,intron-Proximal3.199865.20111HepG2GRWD1
chr28673119086731256-3'-UTR,intron-Distal3.234193.66977HepG2PCBP2
chr28673207186732155-3'-UTR,intron-Distal3.957596.50645HepG2IGF2BP1
chr28675638486756523-3'-UTR,CDS,intron-Distal,intron-Proximal3.265486.06509HepG2PPIG
chr28675648486756521-3'-UTR,CDS,intron-Distal,intron-Proximal4.070614.51739HepG2BCLAF1
chr28675638886756484-3'-UTR,CDS,intron-Distal,intron-Proximal4.5451411.11870HepG2BCLAF1
chr28679048086790564-5'-UTR,intron-Distal,intron-Proximal4.251158.22731HepG2NCBP2
chr28679042686790481-5'-UTR,CDS,intron-Distal3.342296.87079K562DDX3X
chr28679048186790553-5'-UTR,intron-Distal,intron-Proximal4.394886.71767K562DDX3X
chr28679047986790564-5'-UTR,intron-Distal,intron-Proximal4.517489.23400HepG2DDX3X
chr28684753886847603-5'-UTR,CDS,intron-Distal,intron-Proximal3.872203.28461K562BUD13
chr28673303686733073-CDS,intron-Distal,intron-Proximal3.826265.35703HepG2BCLAF1
chr28673460186734625-CDS,intron-Distal,intron-Proximal3.241304.74886HepG2BCLAF1
chr28673462586734716-CDS,intron-Distal4.591505.35719HepG2GRWD1
chr28676937486769390-CDS,intron-Distal,intron-Proximal3.171633.94979HepG2BCLAF1
chr28684742486847503-CDS,intron-Distal,intron-Proximal5.384769.27403HepG2PRPF8
chr28675633486756394-CDS,intron-Distal,intron-Proximal4.554084.01763HepG2GRWD1
chr28673462586734712-CDS,intron-Distal3.918128.08603HepG2BCLAF1
chr28673461186734704-CDS,intron-Distal3.419934.08867HepG2LARP4
chr28673294286733005-CDS,intron-Distal,intron-Proximal4.276288.58502K562LIN28B
chr28678321486783329-intron-Distal4.381695.85485K562KHSRP
chr28677746086777570-intron-Distal4.617646.44310K562ILF3
chr28684974086849793-CDS,intron-Distal,intron-Proximal3.140155.08034HepG2EFTUD2
chr28683233686832379-CDS,intron-Distal4.359824.34038HepG2BCLAF1
chr28677958386779631-intron-Distal4.198484.30850HepG2QKI
chr28684093486841042-intron-Distal3.987973.22073HepG2KHSRP
chr28685072286850786-5'-UTR,intron-Distal4.117853.81597K562RBM15
chr28684981086849858-CDS,intron-Distal3.898595.83487K562RBM15
chr28684971286849877-CDS,intron-Distal,intron-Proximal3.259665.33133K562BUD13
chr28685080786850853-5'-UTR,intron-Distal3.4823614.44873HepG2DDX3X
chr28684970386849753-intron-Distal,intron-Proximal3.999723.16051HepG2PPIG
chr28684973086849786-CDS,intron-Distal,intron-Proximal4.416115.63763K562AQR
chr28683074086830825-3'-UTR,intron-Distal3.691334.59124HepG2FUBP3
chr28678985986790015-intron-Distal3.525306.75245K562NONO
chr28683083686830929-3'-UTR,intron-Distal4.373217.42412HepG2FUBP3
chr28685021686850261-5'-UTR,intron-Distal,intron-Proximal3.390334.01566HepG2RBM15
chr28685085386850936-5'-UTR,intron-Distal4.5440548.15230HepG2DDX3X
chr28685020586850250-5'-UTR,intron-Distal,intron-Proximal3.9810712.81656HepG2DDX3X
chr28684973186849786-CDS,intron-Distal,intron-Proximal5.130257.92973HepG2PRPF8
chr28685046686850533-5'-UTR,intron-Distal3.9228121.62565HepG2DDX3X
chr28685067886850721-5'-UTR,intron-Distal6.8014318.18439HepG2DDX3X
chr28677965286779700-intron-Distal3.822323.16986HepG2QKI
chr28684778386847918-intron-Distal4.307645.46313K562KHSRP
chr28683124786831328-CDS,intron-Distal3.539115.56491HepG2BCLAF1
chr28677495786775027-intron-Distal3.751553.50219HepG2CSTF2
chr28685054886850639-5'-UTR,intron-Distal5.0425031.07355HepG2DDX3X
chr28685013586850205-5'-UTR,intron-Distal,intron-Proximal4.4885330.05454HepG2DDX3X
chr28678035486780452-intron-Distal3.382553.68839K562KHSRP
chr28683933186839424-CDS,intron-Distal,intron-Proximal3.132233.42396HepG2U2AF2
chr28677746686777558-intron-Distal5.6891116.92837HepG2PCBP2
chr28685035386850432-5'-UTR,intron-Distal3.2940622.91550HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHMP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHMP3 is not available on ENCORE database.

  • 106 RBPs can affect the levels of CHMP3.  








The Knockdown/knockout RNA-Seq assay for CHMP3 is not available on ENCORE database.





106 RBPs can affect the gene expression of CHMP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHMP3ENSG00000115561.103657.777602442.646300.582406.986805.57870HepG2ABCF1
CHMP3ENSG00000115561.102391.392301687.569800.5028012.1143011.03330HepG2ACO1
CHMP3ENSG00000115561.104023.826402889.914700.477404.068903.44130HepG2AKAP1
CHMP3ENSG00000115561.102063.696801695.445200.283503.680102.80750HepG2AKAP8L
CHMP3ENSG00000115561.101700.370702997.12310-0.817707.255806.34060HepG2BOP1
CHMP3ENSG00000115561.102838.424002137.639300.409005.371204.34170HepG2CALR
CHMP3ENSG00000115561.102810.464202271.794700.306902.312401.60050HepG2CIRBP
CHMP3ENSG00000115561.102237.986101615.928100.469702.534001.80360HepG2CNOT7
CHMP3ENSG00000115561.101483.094201160.270500.354002.693201.62960HepG2CSTF2
CHMP3ENSG00000115561.102724.149401670.496900.7054011.5463010.27120HepG2DDX21
CHMP3ENSG00000115561.102048.191701634.480000.325403.173802.19360HepG2DDX24
CHMP3ENSG00000115561.103424.175702768.409800.306602.202601.63820HepG2DDX3X
CHMP3ENSG00000115561.102207.590701614.530400.451308.389507.33590HepG2DKC1
CHMP3ENSG00000115561.101210.521701555.21310-0.361506.091705.17960HepG2DNAJC2
CHMP3ENSG00000115561.102448.837901732.680300.499005.195903.96730HepG2EEF2
CHMP3ENSG00000115561.101904.169601577.361300.271502.312901.32320HepG2EIF3G
CHMP3ENSG00000115561.104131.666602526.569000.709408.294607.19210HepG2EIF4A3
CHMP3ENSG00000115561.103274.012102459.775000.412402.560101.89610HepG2EIF4B
CHMP3ENSG00000115561.103347.991302424.081400.4658010.643409.20640HepG2EIF4G1
CHMP3ENSG00000115561.102654.968402116.195100.327103.008301.87300HepG2ESF1
CHMP3ENSG00000115561.103661.956203213.591400.188302.255001.70310HepG2ETF1
CHMP3ENSG00000115561.102138.506801649.000300.374903.982002.98080HepG2EWSR1
CHMP3ENSG00000115561.103137.288102466.565100.346902.438801.71310HepG2FIP1L1
CHMP3ENSG00000115561.102297.958701584.078300.536606.836705.88810HepG2HNRNPA1
CHMP3ENSG00000115561.101842.747202258.12110-0.293303.764902.70070HepG2HNRNPA2B1
CHMP3ENSG00000115561.102383.116101762.001500.435504.737103.84700HepG2HNRNPC
CHMP3ENSG00000115561.101579.055002394.02850-0.600407.571606.46080HepG2HNRNPK
CHMP3ENSG00000115561.101944.850002238.14370-0.202602.618201.96220HepG2HNRNPL
CHMP3ENSG00000115561.103228.518402403.657500.425504.004503.20580HepG2IGF2BP2
CHMP3ENSG00000115561.102093.953601787.925100.227803.290602.49710HepG2ILF2
CHMP3ENSG00000115561.104363.818103048.016900.517604.169703.14420HepG2LARP4
CHMP3ENSG00000115561.102157.009701732.539300.316004.468203.42200HepG2PARN
CHMP3ENSG00000115561.101984.969402390.09540-0.268003.754503.07060HepG2PCBP1
CHMP3ENSG00000115561.101070.591101561.17260-0.544208.886507.61230HepG2PPIL4
CHMP3ENSG00000115561.102102.730801424.668400.561505.635404.52620HepG2PRPF8
CHMP3ENSG00000115561.102927.789202325.771400.332003.373702.72480HepG2PUF60
CHMP3ENSG00000115561.102068.240202468.93480-0.255504.168103.47230HepG2PUM1
CHMP3ENSG00000115561.102046.382501718.889900.251503.347902.68570HepG2PUS1
CHMP3ENSG00000115561.103269.061802634.018400.311503.746203.03620HepG2QKI
CHMP3ENSG00000115561.101799.018602685.98680-0.5782011.8318010.91470HepG2RBM22
CHMP3ENSG00000115561.101797.114302390.47190-0.411604.976504.09610HepG2RBM25
CHMP3ENSG00000115561.104949.971103120.954600.6653011.4072010.18470HepG2RPLP0
CHMP3ENSG00000115561.102412.972301368.640800.8180016.2983014.98150HepG2RPS19
CHMP3ENSG00000115561.101888.279901373.651700.459004.370403.20000HepG2SERBP1
CHMP3ENSG00000115561.102140.489002532.10240-0.242403.208302.57750HepG2SF3B4
CHMP3ENSG00000115561.102343.127501817.771700.366207.970406.96850HepG2SMN1
CHMP3ENSG00000115561.103482.943703033.757000.199103.008702.49310HepG2SRFBP1
CHMP3ENSG00000115561.103861.296102642.903900.5469015.7575014.82670HepG2SRSF1
CHMP3ENSG00000115561.103410.770902296.391300.5706015.7461014.42450HepG2SRSF5
CHMP3ENSG00000115561.102409.970002846.56670-0.240202.854002.14770HepG2SRSF7
CHMP3ENSG00000115561.101906.983602150.08900-0.173101.928101.45130HepG2SRSF9
CHMP3ENSG00000115561.103058.176402634.078200.215302.938002.41340HepG2SSB
CHMP3ENSG00000115561.101223.214801647.81860-0.429902.791001.54900HepG2STAU1
CHMP3ENSG00000115561.103033.659502611.603200.216002.487901.89210HepG2SUCLG1
CHMP3ENSG00000115561.102364.993701838.606800.363102.384501.75020HepG2SUPV3L1
CHMP3ENSG00000115561.104169.916702900.892100.523406.099705.08220HepG2TARDBP
CHMP3ENSG00000115561.103574.725802091.660900.773104.098102.81850HepG2TBRG4
CHMP3ENSG00000115561.101377.938302110.18330-0.614907.172706.16910HepG2U2AF1
CHMP3ENSG00000115561.10738.135801086.09560-0.557205.034704.00480HepG2UCHL5
CHMP3ENSG00000115561.102418.766802106.360700.199402.455101.79050HepG2UPF1
CHMP3ENSG00000115561.101672.711902033.61190-0.281903.862603.17290HepG2UTP3
CHMP3ENSG00000115561.102237.526801796.882100.316305.627904.72180HepG2ZC3H8
CHMP3ENSG00000115561.101124.686501938.81340-0.785707.489405.23920HepG2ZRANB2
CHMP3ENSG00000115561.101279.938101655.87440-0.371503.148101.82890K562ABCF1
CHMP3ENSG00000115561.10843.857201132.22500-0.424103.776003.01080K562AKAP8L
CHMP3ENSG00000115561.101656.651101323.798900.323502.635201.42670K562APOBEC3C
CHMP3ENSG00000115561.10798.541101163.44130-0.543004.927204.18420K562AQR
CHMP3ENSG00000115561.10491.91970650.63920-0.403403.588802.49030K562BCLAF1
CHMP3ENSG00000115561.10823.294201153.32720-0.486303.813602.08730K562BUD13
CHMP3ENSG00000115561.10614.27220812.80230-0.404003.363501.68310K562CEBPZ
CHMP3ENSG00000115561.10548.19200759.97260-0.471303.699102.20840K562CIRBP
CHMP3ENSG00000115561.10730.431101521.18830-1.058404.822503.36840K562CNOT7
CHMP3ENSG00000115561.10955.017601234.35610-0.370203.994202.65320K562CPEB4
CHMP3ENSG00000115561.10342.48090493.60690-0.527303.813402.54610K562CSTF2
CHMP3ENSG00000115561.101427.356101844.49570-0.369903.778302.63080K562CELF1
CHMP3ENSG00000115561.10604.91880934.18510-0.627008.426006.31100K562DDX21
CHMP3ENSG00000115561.10243.05530543.95340-1.1622011.930709.88880K562EFTUD2
CHMP3ENSG00000115561.101290.10990982.991200.392104.772603.86090K562EIF2S2
CHMP3ENSG00000115561.10623.88730396.448500.654103.257502.15820K562EIF3A
CHMP3ENSG00000115561.10853.76900641.027800.413403.562002.66540K562EIF3G
CHMP3ENSG00000115561.10626.24980486.271600.364902.274501.52780K562EIF4A3
CHMP3ENSG00000115561.10664.61700886.74250-0.416003.711102.21500K562EXOSC5
CHMP3ENSG00000115561.10364.28670566.69440-0.637506.624704.42780K562FUS
CHMP3ENSG00000115561.10954.98470505.701900.9171017.0820015.69140K562FXR1
CHMP3ENSG00000115561.10376.93920545.33790-0.532803.133201.60490K562GEMIN5
CHMP3ENSG00000115561.10617.33130874.54310-0.502505.229103.68960K562GLRX3
CHMP3ENSG00000115561.10891.408401309.99800-0.555406.013604.89430K562GRSF1
CHMP3ENSG00000115561.10992.76670674.730200.557005.868705.03090K562HNRNPC
CHMP3ENSG00000115561.10490.83750708.19950-0.528903.825802.34820K562HNRNPK
CHMP3ENSG00000115561.10924.845601154.40180-0.319902.499801.50010K562HNRNPL
CHMP3ENSG00000115561.101342.96310978.908300.456103.375102.33950K562HNRNPM
CHMP3ENSG00000115561.10618.97770806.46090-0.381703.346202.36580K562HNRNPU
CHMP3ENSG00000115561.102052.139601613.737000.346602.796201.99680K562HSPD1
CHMP3ENSG00000115561.10549.88890973.56080-0.824103.598302.51820K562KRR1
CHMP3ENSG00000115561.101207.803601599.12170-0.404902.763601.63500K562MSI2
CHMP3ENSG00000115561.10532.37110919.45390-0.7883010.388108.92760K562MTPAP
CHMP3ENSG00000115561.10578.186401021.67540-0.8213014.1905012.68390K562NSUN2
CHMP3ENSG00000115561.10456.42210663.05910-0.538804.375203.13930K562PCBP2
CHMP3ENSG00000115561.10789.124601127.93470-0.515404.070303.06010K562PCBP3
CHMP3ENSG00000115561.10638.64050865.18320-0.438003.858402.90510K562POLR2G
CHMP3ENSG00000115561.101048.227301351.04280-0.366102.923402.07720K562PPIG
CHMP3ENSG00000115561.10455.79050604.94530-0.408402.671101.78510K562PSIP1
CHMP3ENSG00000115561.101428.975701740.94430-0.284902.405301.41570K562PUM1
CHMP3ENSG00000115561.10741.01740560.822000.401902.306701.40270K562RPS3
CHMP3ENSG00000115561.101229.09520770.840200.673008.776306.91360K562SAFB
CHMP3ENSG00000115561.101127.81070796.985600.500804.650302.76060K562SDAD1
CHMP3ENSG00000115561.10414.362201008.01450-1.2826028.2728025.97300K562SF3A3
CHMP3ENSG00000115561.10463.898901084.28350-1.224906.578505.04270K562SF3B1
CHMP3ENSG00000115561.10293.84780511.62900-0.800008.656707.09980K562SF3B4
CHMP3ENSG00000115561.10405.14530656.68090-0.696807.980905.17010K562SLTM
CHMP3ENSG00000115561.101064.88120709.795800.585106.798105.69950K562SRSF1
CHMP3ENSG00000115561.10448.81770670.35550-0.578804.896503.42480K562SRSF5
CHMP3ENSG00000115561.10571.02250833.61380-0.545806.550104.74480K562SRSF7
CHMP3ENSG00000115561.10622.726301428.42540-1.1978014.5248011.69700K562STAU1
CHMP3ENSG00000115561.10253.93890512.65130-1.013508.698806.84940K562SUPV3L1
CHMP3ENSG00000115561.101276.79500867.775300.557006.777105.48190K562SYNCRIP
CHMP3ENSG00000115561.10307.89880467.22400-0.601703.545001.63730K562TFIP11
CHMP3ENSG00000115561.10298.50750581.86850-0.962909.118807.34690K562TIAL1
CHMP3ENSG00000115561.10955.838201392.58090-0.542905.312103.24270K562TRIP6
CHMP3ENSG00000115561.10776.076601009.91790-0.380004.186202.62540K562TROVE2
CHMP3ENSG00000115561.10300.46720476.94440-0.666604.402402.95830K562U2AF1
CHMP3ENSG00000115561.10187.03280492.57330-1.3970020.4794018.26490K562U2AF2
CHMP3ENSG00000115561.10819.809901083.29780-0.402103.616702.80310K562UPF1
CHMP3ENSG00000115561.10560.93630926.95400-0.724709.447507.78860K562WDR3
CHMP3ENSG00000115561.10593.89520963.85390-0.698609.284607.83420K562WDR43
CHMP3ENSG00000115561.101080.053301378.42630-0.351903.127801.74550K562WRN
CHMP3ENSG00000115561.10892.767701310.67360-0.554006.253904.87020K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHMP3 is not available on ENCORE database.





7 RBPs can affect the splicing of CHMP3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECHMP3ENSG00000115561.10chr2-8676823986768487867563408675652086769374867694350.107000.000270.06187includedK562METAP2
SECHMP3ENSG00000115561.10chr2-8676823986768487867563408675652086769374867694900.057000.009460.07771includedK562AQR
SECHMP3ENSG00000115561.10chr2-867563408675652086737480867376028679042686790602-0.137000.000010.01093excludedK562ABCF1
SECHMP3ENSG00000115561.10chr2-867563408675652086737480867376028679042686790602-0.057000.002520.09229excludedHepG2SF3B4
SECHMP3ENSG00000115561.10chr2-8676937486769435867563408675652086790426867904970.085000.001500.05128includedK562HNRNPU
SECHMP3ENSG00000115561.10chr2-867682398676848786756340867565208676937486769435-0.054000.000540.01690excludedK562AGGF1
SECHMP3ENSG00000115561.10chr2-8676823986768487867563408675652086769374867694350.125000.000040.00130includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHMP3 is not avaliable on ENCORE database.