ARHGEF10

General Information

Gene Name       : ARHGEF10
Gene ID             : ENSG00000104728.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARHGEF10)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARHGEF10ENSG00000104728.150.070.080.08ENCSR000AEF
HepG2ARHGEF10ENSG00000104728.150.000.010.01ENCSR985KAT
K562ARHGEF10ENSG00000104728.152.873.313.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARHGEF10 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARHGEF10 RNA is bound by 29 proteins.  







eCLIP assay for ARHGEF10 is not avaliable on ENCORE database.





29 proteins are bound to ARHGEF10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr818516571851844+3'-UTR,CDS,intron-Distal,intron-Proximal4.518454.85612K562PRPF8
chr817722121772296+5'-UTR,intron-Proximal3.921318.91837K562GEMIN5
chr817721971772283+5'-UTR,intron-Proximal3.767545.77496K562DDX24
chr817721781772326+5'-UTR,intron-Proximal3.671297.18598K562DROSHA
chr817721991772280+5'-UTR,intron-Proximal3.568363.26275K562BUD13
chr817722261772286+5'-UTR,intron-Proximal3.890586.00014K562CSTF2T
chr817721761772350+5'-UTR,intron-Proximal4.763923.96837K562XRCC6
chr817722161772281+5'-UTR,intron-Proximal4.810875.14565K562UCHL5
chr818082731808351+CDS,intron-Proximal3.748653.95301K562ZNF622
chr818061601806276+CDS4.544437.51551K562UCHL5
chr818248451824890+CDS3.333623.02345K562ZNF622
chr818061491806280+CDS5.9247211.96442K562ZNF622
chr818425651842662+CDS3.209824.59873K562UCHL5
chr818247791824899+CDS4.000039.71209K562UCHL5
chr817903971790447+intron-Distal4.909424.38162K562DDX52
chr817801511780240+intron-Distal7.4831727.27691K562DDX52
chr817735851773656+intron-Distal3.922543.80512K562CSTF2T
chr817831251783188+intron-Distal4.237247.83370K562DHX30
chr817925571792618+intron-Distal3.716057.92390K562PHF6
chr817824101782453+intron-Distal4.547743.13033K562TBRG4
chr817803731780464+intron-Distal5.844039.45304K562TBRG4
chr817824941782518+intron-Distal3.882205.50026K562DDX52
chr817925651792606+intron-Distal3.507628.85871K562DDX52
chr817824791782533+intron-Distal5.192495.19708K562TBRG4
chr817868011786864+intron-Distal5.417195.05269K562DHX30
chr817867761786844+intron-Distal4.236687.21727K562DDX52
chr817814821781527+intron-Distal5.136515.34664K562TBRG4
chr817800081780119+intron-Distal5.5966222.42927K562DDX52
chr817879371787983+intron-Distal4.101695.80675K562EIF4G2
chr817801341780233+intron-Distal6.0443218.06947K562PHF6
chr817803811780432+intron-Distal4.217716.47402K562PHF6
chr817867951786855+intron-Distal4.438395.28165K562CSTF2T
chr817819251781989+intron-Distal5.259649.71719K562DDX52
chr817892171789256+intron-Distal5.718985.36159K562DHX30
chr817827231782771+intron-Distal3.953157.83418K562DDX52
chr817781261778235+intron-Distal4.5082413.12854K562DHX30
chr817887661788826+intron-Distal4.890965.17678K562EIF4G2
chr817818291781843+intron-Distal4.718984.70758K562DHX30
chr817802331780314+intron-Distal6.6486114.69532K562PHF6
chr817801541780247+intron-Distal6.3855218.03663K562TBRG4
chr817925321792565+intron-Distal4.040949.34337K562DDX52
chr817801871780276+intron-Distal5.367904.49804K562ABCF1
chr817801731780313+intron-Distal4.087096.66441K562AKAP1
chr817821911782257+intron-Distal6.5376910.68131K562DHX30
chr817815371781557+intron-Distal5.070395.02959K562DDX52
chr817794011779428+intron-Distal4.381033.38171K562TBRG4
chr817745641774722+intron-Distal4.478788.03551K562EIF4G2
chr817801611780253+intron-Distal5.8664912.00900K562GEMIN5
chr817853141785366+intron-Distal3.701904.99689K562DDX52
chr817925231792624+intron-Distal5.3680072.12815K562DDX51
chr817794481779514+intron-Distal6.6494513.13040K562DHX30
chr817985631798669+intron-Distal4.059383.43867K562CSTF2T
chr817736081773725+intron-Distal3.033843.15376K562ILF3
chr817889811789085+intron-Distal4.514927.66106K562EIF4G2
chr817871061787171+intron-Distal5.309217.68107K562EIF4G2
chr817821061782217+intron-Distal6.8452919.03854K562DDX52
chr817791701779271+intron-Distal3.801996.25903K562DDX6
chr817871261787196+intron-Distal5.467166.89646K562DDX52
chr817740041774072+intron-Distal3.898083.17740K562CSTF2T
chr817925341792607+intron-Distal4.2664410.72003K562TBRG4
chr817814461781662+intron-Distal6.3711010.91183K562DDX6
chr817830111783049+intron-Distal6.3687610.01612K562DHX30
chr817817811781859+intron-Distal5.2838912.17768K562DDX52
chr817814121781648+intron-Distal6.8432917.66641K562EFTUD2
chr817801641780316+intron-Distal7.5272145.59003K562DHX30
chr817800041780113+intron-Distal4.8103514.47949K562TBRG4
chr817801631780240+intron-Distal5.628398.96986K562DDX6
chr817890361789086+intron-Distal4.424165.24207K562PHF6
chr817827461782782+intron-Distal5.187205.19823K562PHF6
chr817792231779327+intron-Distal3.963053.70058K562CSTF2T
chr817823091782348+intron-Distal5.616946.84641K562DDX52
chr817870251787190+intron-Distal3.287815.37119K562CSTF2T
chr817825921782642+intron-Distal5.123447.83161K562GEMIN5
chr817794751779505+intron-Distal3.436543.50054K562TBRG4
chr817925161792620+intron-Distal5.4668111.78824K562FUS
chr817847711784832+intron-Distal5.259645.02959K562DDX52
chr817814771781575+intron-Distal7.1813010.24526K562AARS
chr817793641779465+intron-Distal6.485429.35248K562DDX52
chr817925611792608+intron-Distal4.0175518.92661K562DHX30
chr817925261792561+intron-Distal4.4345910.21823K562DHX30
chr817803901780437+intron-Distal6.137476.67863K562DHX30
chr817887731788834+intron-Distal4.116714.22598K562CSTF2T
chr817801621780255+intron-Distal4.230274.19588K562ZC3H8
chr817792201779285+intron-Distal5.581308.97553K562TBRG4
chr817803751780441+intron-Distal6.5238315.17169K562DDX52
chr817885981788717+intron-Distal6.1297712.13671K562ZRANB2
chr817925251792630+intron-Distal4.4013920.20504K562CSTF2T
chr817870081787077+intron-Distal5.389105.64863K562DDX52
chr817925411792612+intron-Distal3.567286.18168K562FAM120A
chr817890311789096+intron-Distal6.1712010.69070K562DDX52
chr817869981787057+intron-Distal4.696213.72755K562EIF4G2
chr817800121780070+intron-Distal5.036186.00251K562DDX6
chr817800571780106+intron-Distal6.6374712.03817K562DHX30
chr817781371778216+intron-Distal4.454727.21727K562DDX52
chr817925181792624+intron-Distal5.1101318.67002K562EWSR1
chr818610121861070+intron-Distal3.903793.01445K562EXOSC5
chr817882921788336+intron-Distal3.390963.87725K562EIF4G2
chr817823041782350+intron-Distal5.744937.23636K562PHF6
chr817852811785374+intron-Distal4.215024.04290K562CSTF2T
chr817783371778390+intron-Distal4.438874.96672K562DDX52
chr817925211792620+intron-Distal5.5280724.38387K562AKAP1
chr817746521774744+intron-Distal3.289093.99385K562CSTF2T
chr818524641852595+intron-Distal,intron-Proximal3.088783.73266K562KHSRP
chr817815211781578+intron-Distal4.399906.12175K562AKAP1
chr817814731781600+intron-Distal5.6003810.58433K562PUM1
chr817868011786859+intron-Distal4.581304.16086K562TBRG4
chr817890121789126+intron-Distal5.070284.67460K562TBRG4
chr817801711780297+intron-Distal4.674044.28644K562PUM1
chr817778921777940+intron-Distal4.277914.92624K562DDX52
chr817903431790435+intron-Distal3.337573.74491K562CSTF2T
chr817859151785961+intron-Distal5.485425.64863K562DDX52
chr817838041783900+intron-Distal3.869213.28464K562EWSR1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARHGEF10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARHGEF10 is not available on ENCORE database.

  • 25 RBPs can affect the levels of ARHGEF10.  








The Knockdown/knockout RNA-Seq assay for ARHGEF10 is not available on ENCORE database.





25 RBPs can affect the gene expression of ARHGEF10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARHGEF10ENSG00000104728.1117.425102.163203.009803.151102.26880HepG2EIF4G1
ARHGEF10ENSG00000104728.1115.617003.704002.075901.931901.41630HepG2HNRNPU
ARHGEF10ENSG00000104728.1117.803203.559702.322202.140901.68230HepG2SRFBP1
ARHGEF10ENSG00000104728.1113.977003.089702.177401.740901.31110HepG2SSB
ARHGEF10ENSG00000104728.11722.96090494.531600.547804.264502.72330K562ABCF1
ARHGEF10ENSG00000104728.11319.33140209.356900.609003.505802.29020K562CCAR1
ARHGEF10ENSG00000104728.11327.91620241.620200.440502.417401.43920K562CSTF2
ARHGEF10ENSG00000104728.11529.09270691.26340-0.385703.201502.25090K562DKC1
ARHGEF10ENSG00000104728.11167.42440272.92060-0.705003.736602.66350K562EFTUD2
ARHGEF10ENSG00000104728.11291.48500392.25440-0.428402.788702.06740K562EIF2S2
ARHGEF10ENSG00000104728.11615.69560783.40300-0.347502.397001.51850K562EIF4G2
ARHGEF10ENSG00000104728.11268.12130409.48220-0.610904.876004.10360K562FXR1
ARHGEF10ENSG00000104728.11541.35530357.618500.598103.782902.85990K562GPKOW
ARHGEF10ENSG00000104728.11216.12130303.98570-0.492202.370001.81130K562HNRNPC
ARHGEF10ENSG00000104728.11162.96000292.39250-0.843404.781903.52530K562HNRNPM
ARHGEF10ENSG00000104728.11597.19130476.134800.326702.382601.63190K562MTPAP
ARHGEF10ENSG00000104728.11134.48800265.58290-0.981705.801204.71230K562PRPF8
ARHGEF10ENSG00000104728.11405.64670637.07940-0.651205.290604.57110K562PUS1
ARHGEF10ENSG00000104728.11659.94350534.826800.303202.409201.52770K562SRPK2
ARHGEF10ENSG00000104728.11246.89640325.79870-0.400101.919101.31750K562SRSF1
ARHGEF10ENSG00000104728.11384.47340278.553700.464802.438101.55970K562TRIM56
ARHGEF10ENSG00000104728.11582.61970415.846600.486403.230401.70520K562TRIP6
ARHGEF10ENSG00000104728.11720.94620560.925000.362003.344802.55940K562UPF1
ARHGEF10ENSG00000104728.11982.92200705.194000.479004.702403.01170K562WRN
ARHGEF10ENSG00000104728.11834.80910670.190500.316802.168801.41570K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARHGEF10 is not available on ENCORE database.





1 RBPs can affect the splicing of ARHGEF10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEARHGEF10ENSG00000104728.11chr8+179151817916021772153177227918061251806281-0.392000.002480.03579excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARHGEF10 is not avaliable on ENCORE database.