SNRPD1

General Information

Gene Name       : SNRPD1
Gene ID             : ENSG00000167088.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNRPD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNRPD1ENSG00000167088.10162.75136.90149.82ENCSR000AEF
HepG2SNRPD1ENSG00000167088.10128.09140.60134.34ENCSR985KAT
K562SNRPD1ENSG00000167088.10166.88191.08178.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNRPD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNRPD1 RNA is bound by 17 proteins.  







eCLIP assay for SNRPD1 is not avaliable on ENCORE database.





17 proteins are bound to SNRPD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr181920372219203777+3'-UTR,CDS,intron-Distal,intron-Proximal4.043243.34382K562APOBEC3C
chr181920907419209118+3'-UTR,CDS4.092496.15459HepG2GRWD1
chr181920374419203783+3'-UTR,CDS,intron-Proximal3.2470810.05549K562UCHL5
chr181920911019209130+3'-UTR4.5130626.27361K562UCHL5
chr181920911919209185+3'-UTR5.182267.56355HepG2LARP4
chr181920371819203730+3'-UTR,CDS,intron-Distal3.238178.41511K562ZNF622
chr181920372819203779+3'-UTR,CDS,intron-Distal,intron-Proximal3.810059.50935HepG2BCLAF1
chr181920902119209113+3'-UTR,CDS,intron-Proximal4.083424.69757HepG2TRA2A
chr181920388119203900+3'-UTR,CDS4.3595718.97502K562UCHL5
chr181920387319203900+3'-UTR,CDS3.5312513.05000K562ZNF622
chr181920902119209077+3'-UTR,CDS,intron-Proximal3.4500237.17588K562ZNF622
chr181920905219209077+3'-UTR,CDS4.4154138.52736K562UCHL5
chr181920902719209052+3'-UTR,CDS4.4290734.71222K562UCHL5
chr181920902119209027+3'-UTR,CDS,intron-Proximal4.8646126.69443K562UCHL5
chr181920904819209080+3'-UTR,CDS3.2974929.30817K562GRWD1
chr181920913519209183+3'-UTR6.04894400.00000K562PUM2
chr181920372819203781+3'-UTR,CDS,intron-Distal,intron-Proximal3.089309.34966K562GRWD1
chr181920908019209118+3'-UTR,CDS3.4361313.56387K562GRWD1
chr181920370719203727+3'-UTR,CDS,intron-Distal,intron-Proximal3.108635.27152HepG2BCLAF1
chr181920915319209176+3'-UTR4.9800418.74132K562PABPC4
chr181920913019209168+3'-UTR3.7643113.36249K562UCHL5
chr181920902219209111+3'-UTR,CDS,intron-Proximal3.355449.86954HepG2BCLAF1
chr181920914119209193+3'-UTR5.105908.79791HepG2SUB1
chr181920902119209048+3'-UTR,CDS,intron-Proximal3.1716526.63869K562GRWD1
chr181920907719209117+3'-UTR,CDS3.8671724.21385K562ZNF622
chr181920910319209178+3'-UTR4.073018.38160K562LARP4
chr181920911719209135+3'-UTR4.6917120.88544K562PUM2
chr181920902019209102+3'-UTR,CDS,intron-Proximal4.056638.51323K562TRA2A
chr181920907719209110+3'-UTR,CDS4.5797136.41590K562UCHL5
chr181920387019203900+3'-UTR,CDS4.670275.35719HepG2GRWD1
chr181920370919203717+3'-UTR,CDS,intron-Distal3.407787.63960K562UCHL5
chr181920902219209074+3'-UTR,CDS,intron-Proximal3.500877.26922HepG2GRWD1
chr181920372919203763+3'-UTR,CDS,intron-Distal,intron-Proximal3.067007.50511K562YBX3
chr181920902319209119+3'-UTR,CDS3.120645.91053HepG2LARP4
chr181920913319209181+3'-UTR4.856636.73149K562APOBEC3C
chr181920901119209096+3'-UTR,CDS,intron-Proximal3.845514.77916HepG2AQR
chr181920912819209153+3'-UTR4.4201719.72992K562PABPC4
chr181919226619192311+5'-UTR4.4020621.20151K562DDX3X
chr181919231019192385+5'-UTR3.371426.82147K562GEMIN5
chr181919232719192393+5'-UTR,CDS3.977685.32728HepG2DDX3X
chr181919231119192404+5'-UTR,CDS4.77854400.00000K562DDX3X
chr181919231419192403+5'-UTR,CDS3.303815.76233HepG2EIF3D
chr181919239919192446+5'-UTR,CDS,intron-Proximal3.260475.62171K562AQR
chr181920268719202744+CDS,intron-Distal4.4946325.33425K562UCHL5
chr181920270019202763+CDS,intron-Distal,intron-Proximal3.1755313.21046HepG2BCLAF1
chr181920268919202738+CDS,intron-Distal3.5198912.15089HepG2GRWD1
chr181920274419202762+CDS,intron-Distal3.8929413.71061K562UCHL5
chr181920382319203870+CDS,intron-Proximal4.844336.03821HepG2GRWD1
chr181920884819208981+intron-Distal,intron-Proximal4.852545.31925HepG2QKI
chr181919240519192529+intron-Distal,intron-Proximal3.676914.23459K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNRPD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNRPD1 is not available on ENCORE database.

  • 108 RBPs can affect the levels of SNRPD1.  








The Knockdown/knockout RNA-Seq assay for SNRPD1 is not available on ENCORE database.





108 RBPs can affect the gene expression of SNRPD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNRPD1ENSG00000167088.61223.458501507.30350-0.301003.536002.68130HepG2AKAP8L
SNRPD1ENSG00000167088.61345.076101810.75030-0.428903.242102.39200HepG2ASCC1
SNRPD1ENSG00000167088.61998.656002386.07190-0.255603.425602.67650HepG2AUH
SNRPD1ENSG00000167088.6915.408801418.46530-0.631804.388203.27940HepG2BCLAF1
SNRPD1ENSG00000167088.61271.553002016.49510-0.665309.292808.27750HepG2BOP1
SNRPD1ENSG00000167088.61252.881801720.31630-0.457403.390302.53950HepG2CIRBP
SNRPD1ENSG00000167088.61228.338601499.92440-0.288203.904103.14030HepG2CKAP4
SNRPD1ENSG00000167088.6867.995701851.25790-1.0927020.0961018.45780HepG2CPSF6
SNRPD1ENSG00000167088.61998.103202449.78550-0.294005.094404.13380HepG2DAZAP1
SNRPD1ENSG00000167088.61188.411501387.52880-0.223502.436001.64850HepG2DDX19B
SNRPD1ENSG00000167088.6957.694801322.12430-0.465203.080802.36770HepG2DDX21
SNRPD1ENSG00000167088.61058.054102096.42460-0.9865011.2849010.10060HepG2DDX3X
SNRPD1ENSG00000167088.61060.769301800.54120-0.763306.692105.76540HepG2DDX6
SNRPD1ENSG00000167088.61138.228401435.35130-0.334604.041003.25220HepG2DKC1
SNRPD1ENSG00000167088.6798.01780985.91840-0.305002.714802.01610HepG2DNAJC21
SNRPD1ENSG00000167088.6662.89870977.20280-0.559909.464108.34380HepG2DNAJC2
SNRPD1ENSG00000167088.6767.469101094.65410-0.512304.117903.01750HepG2EEF2
SNRPD1ENSG00000167088.6962.121301731.23240-0.847508.082607.10720HepG2EIF2S1
SNRPD1ENSG00000167088.61301.110701913.37420-0.556404.409703.60650HepG2EIF4A3
SNRPD1ENSG00000167088.61746.656402315.20070-0.406503.077402.22040HepG2EIF4G2
SNRPD1ENSG00000167088.61900.777602739.49720-0.5273011.5708010.47890HepG2ETF1
SNRPD1ENSG00000167088.6849.516301072.77460-0.336602.503401.75400HepG2FUBP3
SNRPD1ENSG00000167088.61067.154901790.64210-0.746707.744806.66150HepG2G3BP1
SNRPD1ENSG00000167088.61532.350201900.66560-0.310802.105201.33490HepG2G3BP2
SNRPD1ENSG00000167088.6520.80120791.19390-0.603304.886503.69370HepG2GEMIN5
SNRPD1ENSG00000167088.6941.137002098.56030-1.1569019.1373017.61100HepG2GPKOW
SNRPD1ENSG00000167088.61224.699201432.31870-0.225902.183401.30760HepG2HDGF
SNRPD1ENSG00000167088.6632.52840995.36370-0.654107.344806.36720HepG2HNRNPA1
SNRPD1ENSG00000167088.61808.219602251.42300-0.316304.412103.28030HepG2HNRNPA2B1
SNRPD1ENSG00000167088.6805.861801107.15490-0.458303.998003.17590HepG2HNRNPC
SNRPD1ENSG00000167088.61094.337501710.31970-0.644208.277607.12230HepG2HNRNPF
SNRPD1ENSG00000167088.61922.553402231.56710-0.215002.935202.24310HepG2HNRNPL
SNRPD1ENSG00000167088.6993.961802002.69340-1.0107011.107209.94870HepG2HNRNPLL
SNRPD1ENSG00000167088.61031.182801684.19750-0.707806.920905.82160HepG2IGF2BP1
SNRPD1ENSG00000167088.61026.845101820.23850-0.825907.405206.35670HepG2IGF2BP2
SNRPD1ENSG00000167088.61301.164901830.68060-0.492602.307201.40370HepG2KHSRP
SNRPD1ENSG00000167088.6972.085301371.42460-0.496509.636507.84080HepG2KIF1C
SNRPD1ENSG00000167088.61386.191801930.70520-0.478004.014403.22540HepG2MAGOH
SNRPD1ENSG00000167088.61207.471002042.45370-0.758306.511604.98790HepG2MTPAP
SNRPD1ENSG00000167088.61048.801401987.38820-0.9221011.001509.78090HepG2NCBP2
SNRPD1ENSG00000167088.62078.054102429.20230-0.225202.102901.43620HepG2NOL12
SNRPD1ENSG00000167088.6986.238501770.19090-0.843908.977707.69620HepG2PABPC4
SNRPD1ENSG00000167088.61429.599601809.42750-0.339904.759703.99890HepG2PCBP1
SNRPD1ENSG00000167088.6941.027001238.41080-0.396202.189501.46800HepG2PRPF8
SNRPD1ENSG00000167088.61303.073601841.19530-0.498709.216808.33480HepG2PTBP1
SNRPD1ENSG00000167088.61599.184202318.88600-0.536102.812102.21110HepG2PUF60
SNRPD1ENSG00000167088.61452.724102461.59970-0.7608029.6227028.09850HepG2PUM1
SNRPD1ENSG00000167088.61684.749402459.80180-0.546009.045107.86810HepG2PUM2
SNRPD1ENSG00000167088.6989.785101528.12510-0.6266014.2715013.06240HepG2PUS1
SNRPD1ENSG00000167088.61399.323301993.98510-0.510907.858206.88750HepG2QKI
SNRPD1ENSG00000167088.6828.940201809.69790-1.1264026.3087024.36700HepG2RBM25
SNRPD1ENSG00000167088.61498.986502049.04440-0.451007.640106.82100HepG2NELFE
SNRPD1ENSG00000167088.61426.664301908.45930-0.419806.880705.97190HepG2RECQL
SNRPD1ENSG00000167088.61186.751701842.12170-0.634407.947306.88230HepG2RPLP0
SNRPD1ENSG00000167088.6883.342601303.30460-0.561103.366902.32470HepG2RPS10
SNRPD1ENSG00000167088.6676.29960864.66510-0.354502.588201.99250HepG2RPS19
SNRPD1ENSG00000167088.61648.516801916.85890-0.217602.227501.68940HepG2SF3B4
SNRPD1ENSG00000167088.61645.172802223.44980-0.434609.654308.46890HepG2SLBP
SNRPD1ENSG00000167088.61835.539703705.32090-1.013403.462101.95910HepG2SNRNP200
SNRPD1ENSG00000167088.61501.700502205.63050-0.554603.588502.69460HepG2SNRNP70
SNRPD1ENSG00000167088.62600.431802000.811500.378106.964606.29720HepG2SRSF1
SNRPD1ENSG00000167088.61746.452602289.56190-0.390606.686305.77060HepG2SRSF5
SNRPD1ENSG00000167088.61099.042301680.26070-0.612408.775107.65380HepG2SRSF7
SNRPD1ENSG00000167088.61158.038701627.78880-0.491209.168708.26780HepG2SRSF9
SNRPD1ENSG00000167088.61553.552902245.42540-0.5314012.0648011.14170HepG2SSB
SNRPD1ENSG00000167088.61916.660302603.86290-0.4421010.569409.48550HepG2SUCLG1
SNRPD1ENSG00000167088.6945.781001597.64510-0.756405.795604.87250HepG2SUPV3L1
SNRPD1ENSG00000167088.61475.869301798.47870-0.285203.081102.49380HepG2TAF15
SNRPD1ENSG00000167088.6957.588101951.96570-1.0275019.1472017.55620HepG2TARDBP
SNRPD1ENSG00000167088.61221.114401652.48120-0.436404.990303.87710HepG2TIA1
SNRPD1ENSG00000167088.6685.427301068.70750-0.640808.743707.94490HepG2TIAL1
SNRPD1ENSG00000167088.61704.696702265.45310-0.410304.773703.59310HepG2TUFM
SNRPD1ENSG00000167088.61681.589902397.94620-0.512004.531003.44140HepG2UBE2L3
SNRPD1ENSG00000167088.6942.702501304.11160-0.468207.562006.50070HepG2UPF1
SNRPD1ENSG00000167088.61885.306501259.067100.582305.461504.66720HepG2UTP3
SNRPD1ENSG00000167088.61190.564601434.27180-0.268703.516002.92000HepG2ZNF622
SNRPD1ENSG00000167088.63495.752102628.412100.411308.813607.87590K562AGGF1
SNRPD1ENSG00000167088.62179.830202942.64630-0.432909.271107.49100K562BCLAF1
SNRPD1ENSG00000167088.62540.497204359.78160-0.779104.392303.28440K562BOP1
SNRPD1ENSG00000167088.62538.015403399.72500-0.421704.634502.97580K562CIRBP
SNRPD1ENSG00000167088.62678.568603825.05980-0.514003.428801.79840K562CKAP4
SNRPD1ENSG00000167088.64027.634308766.09190-1.122003.379202.18270K562CNOT7
SNRPD1ENSG00000167088.63827.619004469.95840-0.223802.329601.32230K562CPEB4
SNRPD1ENSG00000167088.62371.767904635.96780-0.966907.195805.92300K562CPSF6
SNRPD1ENSG00000167088.61780.199202232.43540-0.326604.055002.74330K562CSTF2
SNRPD1ENSG00000167088.62166.330402736.85450-0.337304.675803.08090K562DDX21
SNRPD1ENSG00000167088.61381.328302073.35500-0.585908.582406.65380K562DDX3X
SNRPD1ENSG00000167088.63769.993102943.070000.357105.813104.48230K562DKC1
SNRPD1ENSG00000167088.61789.971402331.71040-0.381503.034202.07670K562EFTUD2
SNRPD1ENSG00000167088.61736.858402277.51260-0.391006.371004.50400K562EIF2S1
SNRPD1ENSG00000167088.62877.116603904.86140-0.440606.870005.81100K562EIF2S2
SNRPD1ENSG00000167088.61788.461502496.95040-0.481403.635102.43340K562EIF3D
SNRPD1ENSG00000167088.61405.037102166.18560-0.624508.687907.23350K562EIF4A3
SNRPD1ENSG00000167088.65054.267905810.94920-0.201302.382601.50740K562EIF4G2
SNRPD1ENSG00000167088.61597.608302092.10760-0.389003.406401.98240K562EXOSC5
SNRPD1ENSG00000167088.62462.456604716.46630-0.937606.059904.78250K562FMR1
SNRPD1ENSG00000167088.62544.559303997.40450-0.651602.530001.65920K562FTO
SNRPD1ENSG00000167088.62884.692302252.749000.356602.643602.04990K562FXR1
SNRPD1ENSG00000167088.62342.431103165.06290-0.434207.396205.58910K562GLRX3
SNRPD1ENSG00000167088.62216.097404426.42360-0.998107.817706.47900K562GPKOW
SNRPD1ENSG00000167088.6983.255502409.67440-1.2932012.4098011.22150K562HNRNPC
SNRPD1ENSG00000167088.61607.211802151.35250-0.420702.628101.51780K562HNRNPF
SNRPD1ENSG00000167088.64076.739503168.224700.363603.075901.76950K562HNRNPK
SNRPD1ENSG00000167088.62236.528103171.77580-0.504004.388502.97190K562IGF2BP2
SNRPD1ENSG00000167088.63714.218102902.515100.355703.647302.68280K562KIF1C
SNRPD1ENSG00000167088.62129.193103779.04950-0.827703.299602.27050K562KRR1
SNRPD1ENSG00000167088.64069.229003251.546900.323503.532502.48690K562MBNL1
SNRPD1ENSG00000167088.62518.866704320.59250-0.778504.659203.50220K562METAP2
SNRPD1ENSG00000167088.62442.182703327.62710-0.4463010.418108.95470K562MTPAP
SNRPD1ENSG00000167088.61590.890802163.00990-0.443205.779504.01800K562NCBP2
SNRPD1ENSG00000167088.62440.098003697.42600-0.5996027.3235025.37640K562NSUN2
SNRPD1ENSG00000167088.61594.292402661.15190-0.739109.668108.11860K562PCBP3
SNRPD1ENSG00000167088.61365.990802041.18910-0.579508.715807.32670K562POLR2G
SNRPD1ENSG00000167088.62990.648202269.012600.398304.026003.12160K562PRPF8
SNRPD1ENSG00000167088.65293.413606607.49390-0.319905.588004.20520K562PUM2
SNRPD1ENSG00000167088.64176.107802712.391600.622508.583207.67530K562PUS1
SNRPD1ENSG00000167088.63376.472602642.778500.353405.104004.32130K562RBM15
SNRPD1ENSG00000167088.61390.518801970.41880-0.502903.315802.22920K562RCC2
SNRPD1ENSG00000167088.61821.161102311.53120-0.344002.054101.35530K562RPS19
SNRPD1ENSG00000167088.62680.746603648.21740-0.444608.887907.48440K562SF3A3
SNRPD1ENSG00000167088.62800.657703737.65950-0.4164011.407409.66570K562SRPK2
SNRPD1ENSG00000167088.61122.435401574.96220-0.488702.297101.35380K562SRSF4
SNRPD1ENSG00000167088.61965.574102998.61950-0.609308.460106.52700K562SRSF5
SNRPD1ENSG00000167088.61908.030702442.25100-0.356105.085103.48010K562SRSF7
SNRPD1ENSG00000167088.61132.222502197.40680-0.956608.613006.77870K562SUPV3L1
SNRPD1ENSG00000167088.62791.703602047.373000.447304.504903.45120K562SYNCRIP
SNRPD1ENSG00000167088.62161.169603213.55430-0.572407.116705.92710K562TARDBP
SNRPD1ENSG00000167088.62337.621703099.81590-0.407105.219304.04500K562TIA1
SNRPD1ENSG00000167088.61293.582302078.01280-0.683803.294502.26780K562TIAL1
SNRPD1ENSG00000167088.61627.994402206.88720-0.438902.450301.56930K562TRIM56
SNRPD1ENSG00000167088.61417.696302325.42820-0.713907.413905.67240K562UCHL5
SNRPD1ENSG00000167088.62166.797303920.44870-0.8555036.6559034.39430K562UPF1
SNRPD1ENSG00000167088.61900.543703354.62130-0.8197018.3308016.10120K562WDR3
SNRPD1ENSG00000167088.62938.572003488.29850-0.247402.263101.49100K562WDR43
SNRPD1ENSG00000167088.65157.349006412.08780-0.314203.510102.04720K562WRN
SNRPD1ENSG00000167088.61668.417402367.53170-0.504904.909303.13180K562XRN2
SNRPD1ENSG00000167088.63894.250006097.48230-0.6469011.403909.51450K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNRPD1 is not available on ENCORE database.





9 RBPs can affect the splicing of SNRPD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNRPD1ENSG00000167088.6chr18+192026851920277019192227191924041920370819203900-0.053000.000000.00000excludedK562SF3B4
SESNRPD1ENSG00000167088.6chr18+192026851920276219192274191924041920370819203875-0.090000.000000.00000excludedK562AQR
A3SSSNRPD1ENSG00000167088.6chr18+1920383119203900192038351920390019202685192027620.074000.000100.03292longerK562DROSHA
A3SSSNRPD1ENSG00000167088.6chr18+1920383119203900192038351920390019202685192027620.096000.000000.01183longerK562ABCF1
A3SSSNRPD1ENSG00000167088.6chr18+192038311920390019203835192039001920268519202762-0.099000.000040.00843shorterK562SF3B1
A3SSSNRPD1ENSG00000167088.6chr18+1920383119203900192038351920390019202685192027620.147000.000000.00004longerK562HNRNPL
A3SSSNRPD1ENSG00000167088.6chr18+1920383119203900192038351920390019202685192027620.135000.000010.03576longerK562WDR43
A3SSSNRPD1ENSG00000167088.6chr18+192038311920390019203835192039001920268519202762-0.099000.000120.08975shorterK562METAP2
A3SSSNRPD1ENSG00000167088.6chr18+1920383119203900192038351920390019202685192027620.140000.000060.07541longerK562DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNRPD1 is not avaliable on ENCORE database.