NT5DC3

General Information

Gene Name       : NT5DC3
Gene ID             : ENSG00000111696.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NT5DC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NT5DC3ENSG00000111696.113.302.843.07ENCSR000AEF
HepG2NT5DC3ENSG00000111696.112.433.202.82ENCSR985KAT
K562NT5DC3ENSG00000111696.1111.6810.0310.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NT5DC3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NT5DC3 RNA is bound by 16 proteins.  







eCLIP assay for NT5DC3 is not avaliable on ENCORE database.





16 proteins are bound to NT5DC3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12104170378104170432-3'-UTR,intron-Distal3.887624.50550K562UPF1
chr12104166085104166141-3'-UTR,intron-Distal,intron-Proximal,polyA_site3.008634.40576K562KHSRP
chr12104179302104179432-3'-UTR,intron-Distal,intron-Proximal3.9379411.44618K562KHSRP
chr12104170915104170972-3'-UTR,intron-Distal4.144084.15208K562RBM15
chr12104169758104169806-3'-UTR,intron-Distal4.273879.09006K562PUM2
chr12104179164104179300-3'-UTR,CDS,intron-Distal,intron-Proximal3.403454.77135K562SMNDC1
chr12104169261104169446-3'-UTR,intron-Distal,intron-Proximal3.021594.61999K562HNRNPM
chr12104167687104167754-3'-UTR,intron-Distal4.743836.26929K562YBX3
chr12104190657104190754-CDS,intron-Distal,intron-Proximal3.771414.13746HepG2PPIG
chr12104182615104182698-CDS,intron-Distal,intron-Proximal3.993893.69113K562LIN28B
chr12104179467104179534-CDS,intron-Distal,intron-Proximal3.121493.39327K562U2AF2
chr12104171666104171710-CDS,intron-Distal,intron-Proximal3.144083.34231K562RBM15
chr12104181204104181235-CDS,intron-Distal,intron-Proximal3.666145.66421K562PRPF8
chr12104190652104190787-CDS,intron-Distal,intron-Proximal3.460044.83391K562GRWD1
chr12104190647104190790-CDS,intron-Distal,intron-Proximal4.437445.64460HepG2GRWD1
chr12104200635104200683-CDS,intron-Distal4.094593.43980K562ZNF622
chr12104186976104187043-CDS,intron-Distal4.398434.77252K562ZNF622
chr12104188453104188530-intron-Distal3.202913.73266K562KHSRP
chr12104221759104221830-intron-Distal4.545445.19234K562LIN28B
chr12104189520104189583-intron-Distal3.692115.98773K562KHSRP
chr12104198175104198256-intron-Distal3.439644.12870K562PTBP1
chr12104190556104190625-intron-Distal,intron-Proximal3.898443.45860K562TIA1
chr12104182496104182615-intron-Distal,intron-Proximal3.751803.45805K562KHSRP
chr12104180776104180924-intron-Distal3.046944.40576K562KHSRP
chr12104181158104181204-intron-Distal,intron-Proximal4.600918.54286K562PRPF8
chr12104209270104209339-intron-Distal3.849064.14792HepG2XPO5
chr12104180034104180112-intron-Distal5.644339.44534K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NT5DC3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NT5DC3 is not available on ENCORE database.

  • 59 RBPs can affect the levels of NT5DC3.  








The Knockdown/knockout RNA-Seq assay for NT5DC3 is not available on ENCORE database.





59 RBPs can affect the gene expression of NT5DC3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NT5DC3ENSG00000111696.7204.88870297.42340-0.537702.721501.65920HepG2AATF
NT5DC3ENSG00000111696.7520.65690389.743500.417703.499102.82910HepG2ACO1
NT5DC3ENSG00000111696.7248.97190530.20140-1.090609.279408.36870HepG2AKAP1
NT5DC3ENSG00000111696.7245.54100349.65880-0.510002.630802.04560HepG2BOP1
NT5DC3ENSG00000111696.7319.21420480.22080-0.589203.125402.08460HepG2CCAR1
NT5DC3ENSG00000111696.7309.58710389.67850-0.331902.026501.44480HepG2CKAP4
NT5DC3ENSG00000111696.7199.66560307.08450-0.621002.385101.67830HepG2CNOT7
NT5DC3ENSG00000111696.778.52500192.39410-1.292807.818306.15920HepG2CSTF2
NT5DC3ENSG00000111696.7643.65420420.842300.612906.649805.73580HepG2CELF1
NT5DC3ENSG00000111696.7249.81610360.46600-0.529004.269303.26030HepG2DDX19B
NT5DC3ENSG00000111696.7240.77490328.31560-0.447402.225201.60950HepG2DDX21
NT5DC3ENSG00000111696.7330.41670507.84820-0.620104.044803.30010HepG2DDX3X
NT5DC3ENSG00000111696.7242.76260436.35720-0.846005.682404.82460HepG2DDX6
NT5DC3ENSG00000111696.7727.27980419.376500.794207.169806.24790HepG2EIF2S1
NT5DC3ENSG00000111696.7281.48320380.86650-0.436202.468201.67820HepG2EWSR1
NT5DC3ENSG00000111696.7330.22660223.342500.564102.302201.58060HepG2FUBP3
NT5DC3ENSG00000111696.7240.24110433.79280-0.852506.369905.38210HepG2G3BP1
NT5DC3ENSG00000111696.7637.88770460.631600.469602.952302.03100HepG2G3BP2
NT5DC3ENSG00000111696.7198.79110283.81360-0.513702.393401.78900HepG2HNRNPA1
NT5DC3ENSG00000111696.7173.49130315.69940-0.863705.510304.55920HepG2HNRNPC
NT5DC3ENSG00000111696.7328.44440412.25960-0.327902.136901.53450HepG2HNRNPL
NT5DC3ENSG00000111696.7204.52810313.61150-0.616704.560303.79840HepG2HNRNPU
NT5DC3ENSG00000111696.7612.57110440.912400.474302.915702.22650HepG2IGF2BP2
NT5DC3ENSG00000111696.7181.18740299.36850-0.724403.429601.93490HepG2ILF3
NT5DC3ENSG00000111696.7303.73000506.96280-0.739104.734903.63970HepG2LARP4
NT5DC3ENSG00000111696.7338.58060470.47150-0.474602.343801.76030HepG2MATR3
NT5DC3ENSG00000111696.7659.44550428.744400.621004.598503.67960HepG2PABPC4
NT5DC3ENSG00000111696.7823.98570449.665600.8737015.7812014.52460HepG2PCBP1
NT5DC3ENSG00000111696.7227.55470355.32020-0.642903.096902.00210HepG2PCBP2
NT5DC3ENSG00000111696.7241.12400373.53440-0.631502.913201.66430HepG2PRPF6
NT5DC3ENSG00000111696.7338.02450428.35980-0.341701.801101.30660HepG2PUF60
NT5DC3ENSG00000111696.7360.43000454.70710-0.335202.471301.90390HepG2PUM1
NT5DC3ENSG00000111696.7589.58820396.981900.570506.360205.49490HepG2PUS1
NT5DC3ENSG00000111696.7704.04480495.515100.506604.696803.91420HepG2QKI
NT5DC3ENSG00000111696.7433.85890576.07910-0.409002.970602.43940HepG2RBM22
NT5DC3ENSG00000111696.7378.88080509.21760-0.426502.889602.33920HepG2NELFE
NT5DC3ENSG00000111696.7464.72850343.761800.434902.448001.78190HepG2SF3B1
NT5DC3ENSG00000111696.7379.75880497.22620-0.388802.600902.13840HepG2SRSF1
NT5DC3ENSG00000111696.7447.46010308.100300.538304.099702.96620HepG2SUPT6H
NT5DC3ENSG00000111696.7140.91610304.69740-1.112509.850709.00990HepG2TIAL1
NT5DC3ENSG00000111696.7188.00160382.97250-1.0265011.8786010.64980HepG2ZC3H8
NT5DC3ENSG00000111696.71545.021301011.347200.6112011.7922010.71360K562AGGF1
NT5DC3ENSG00000111696.71298.078801052.337600.302702.114101.53980K562AKAP8L
NT5DC3ENSG00000111696.72663.271601494.472400.8335013.9511012.77740K562AQR
NT5DC3ENSG00000111696.7386.36270518.48180-0.424302.360201.40140K562CCAR1
NT5DC3ENSG00000111696.7577.89940740.85880-0.358402.776201.71800K562CSTF2
NT5DC3ENSG00000111696.71480.299801132.484600.386304.685103.49780K562DKC1
NT5DC3ENSG00000111696.7814.881601180.26690-0.534507.727806.61500K562EIF2S2
NT5DC3ENSG00000111696.7841.071201180.97210-0.489704.688503.56330K562FIP1L1
NT5DC3ENSG00000111696.7733.64270971.36000-0.404902.560901.66860K562HNRNPM
NT5DC3ENSG00000111696.7716.709901122.04480-0.646709.931208.25660K562HNRNPU
NT5DC3ENSG00000111696.71008.238901601.15650-0.667308.468407.09120K562HSPD1
NT5DC3ENSG00000111696.71361.196801116.845700.285301.998601.30620K562KIF1C
NT5DC3ENSG00000111696.71605.632301251.142000.359803.292402.28480K562MBNL1
NT5DC3ENSG00000111696.7851.50950644.842700.401003.108002.17710K562METAP2
NT5DC3ENSG00000111696.71261.65210876.955300.524602.958502.04170K562NAA15
NT5DC3ENSG00000111696.71433.384901069.670800.422203.871102.71020K562PCBP2
NT5DC3ENSG00000111696.71019.246901340.62770-0.395403.262802.35880K562PPIG
NT5DC3ENSG00000111696.71491.764901879.43820-0.333302.418701.65740K562PUF60
NT5DC3ENSG00000111696.71575.603901043.737500.594006.211405.43710K562PUS1
NT5DC3ENSG00000111696.71417.429401016.876000.479003.930203.24040K562RBM15
NT5DC3ENSG00000111696.7725.070301030.95360-0.507803.136101.71570K562RRP9
NT5DC3ENSG00000111696.7882.825101158.82360-0.392502.971402.23840K562TARDBP
NT5DC3ENSG00000111696.71139.696301414.25100-0.311402.649301.40970K562TROVE2
NT5DC3ENSG00000111696.7844.413701141.23220-0.434604.286103.18760K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NT5DC3 is not available on ENCORE database.





8 RBPs can affect the splicing of NT5DC3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENT5DC3ENSG00000111696.7chr12-104182615104182697104181218104181305104186941104187043-0.121000.000170.08988excludedK562UTP3
SENT5DC3ENSG00000111696.7chr12-104182615104182697104181218104181305104186941104187043-0.111000.004640.05005excludedHepG2U2AF2
SENT5DC3ENSG00000111696.7chr12-104187714104187775104187187104187290104190671104190809-0.165000.001000.01225excludedK562AQR
SENT5DC3ENSG00000111696.7chr12-1041826151041826971041812181041813051041869411041870430.081000.000110.06272includedK562ABCF1
SENT5DC3ENSG00000111696.7chr12-104179348104179525104179112104179253104181218104181305-0.235000.000170.00978excludedK562FXR1
SENT5DC3ENSG00000111696.7chr12-1041793481041795251041791121041792531041812181041813050.139000.000080.03488includedK562PPIL4
SENT5DC3ENSG00000111696.7chr12-1041793981041795251041791121041792531041812181041813050.108000.000120.01562includedK562HNRNPUL1
SENT5DC3ENSG00000111696.7chr12-1041793481041795251041791121041792531041812181041813050.317000.000860.01696includedK562HNRNPC
A3SSNT5DC3ENSG00000111696.7chr12-1041869411041870701041869411041870431041871871041873540.124000.001640.01083longerK562AQR
A3SSNT5DC3ENSG00000111696.7chr12-1041739561041741691041739561041741421041791121041792530.232000.000130.00111longerK562AQR
A3SSNT5DC3ENSG00000111696.7chr12-1042006321042007261042006321042007071042087141042088990.171000.001180.00808longerK562AQR
A3SSNT5DC3ENSG00000111696.7chr12-1041876011041878221041876011041877751041906711041908090.206000.000000.00001longerK562AQR
A3SSNT5DC3ENSG00000111696.7chr12-1041812181041813211041812181041813051041826151041826970.135000.004770.02773longerK562AQR
A5SSNT5DC3ENSG00000111696.7chr12-1041739561041741691041740771041741691041717771041718590.117000.000000.00012longerK562AQR
MXENT5DC3ENSG00000111696.7chr12-1041812181041813051041826151041826971041791121041792531041869411041870430.146000.007830.082181includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NT5DC3 is not avaliable on ENCORE database.