BCR

General Information

Gene Name : BCR
Gene ID : ENSG00000186716.20
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BCR)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BCR	ENSG00000186716.20	3.50	11.19	7.34	ENCSR000AEF
HepG2	BCR	ENSG00000186716.20	59.49	8.93	34.21	ENCSR985KAT
K562	BCR	ENSG00000186716.20	43.62	30.83	37.22	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BCR is not avaliable on ENCORE database.

Proteins bound to RNA

BCR RNA is bound by 63 proteins.

CanvasJS.com

eCLIP assay for BCR is not avaliable on ENCORE database.

63 proteins are bound to BCR RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	23549248	23549315	+	intron-Distal	5.80721	85.04054	K562	AGGF1
chr22	23603144	23603243	+	CDS,intron-Proximal	5.07721	71.95090	K562	DDX24
chr22	23630283	23630360	+	CDS,intron-Proximal	4.57037	57.59222	K562	DDX24
chr22	23629388	23629467	+	CDS,intron-Proximal	4.62042	48.43777	K562	DDX24
chr22	23640761	23640828	+	intron-Distal	7.41036	45.95713	HepG2	PTBP1
chr22	23637294	23637381	+	CDS,intron-Distal,intron-Proximal	5.86282	45.56447	HepG2	PRPF8
chr22	23631754	23631814	+	CDS,intron-Proximal	4.50045	40.36017	K562	DDX24
chr22	23549202	23549352	+	intron-Distal	5.60629	38.63902	K562	GTF2F1
chr22	23629493	23629528	+	intron-Proximal	6.42606	36.87841	K562	AQR
chr22	23524112	23524151	+	CDS,intron-Distal	6.35758	36.08175	K562	RBM15
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 505 entries

eCLIP assay for BCR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BCR is not available on ENCORE database.
72 RBPs can affect the levels of BCR.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BCR is not available on ENCORE database.

72 RBPs can affect the gene expression of BCR :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BCR	ENSG00000186716.15	411.44720	997.39870	-1.27750	20.64550	18.98770	HepG2	CPSF6
BCR	ENSG00000186716.15	254.70360	810.50920	-1.67000	17.77770	15.56890	K562	G3BP2
BCR	ENSG00000186716.15	414.25000	811.04670	-0.96930	15.52850	13.59920	K562	U2AF2
BCR	ENSG00000186716.15	1101.17960	711.79180	0.62940	12.59220	11.37500	HepG2	SMN1
BCR	ENSG00000186716.15	497.41130	1188.28560	-1.25640	12.85150	11.18370	HepG2	SNRNP70
BCR	ENSG00000186716.15	2283.33510	1416.05110	0.68920	12.45500	11.09580	K562	PTBP1
BCR	ENSG00000186716.15	951.67780	610.37300	0.64070	10.99230	9.84130	HepG2	SAFB2
BCR	ENSG00000186716.15	1621.09340	1181.54690	0.45620	10.27410	9.28240	HepG2	PUM1
BCR	ENSG00000186716.15	3529.15840	5172.56940	-0.55160	11.09840	8.89280	K562	PUM1
BCR	ENSG00000186716.15	757.57140	1313.81150	-0.79430	9.09090	8.17060	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BCR is not available on ENCORE database.

9 RBPs can affect the splicing of BCR :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	BCR	ENSG00000186716.15	chr22	+	23626163	23626365	23627219	23627388	23615820	23615961	23629345	23629465	0.22100	0.00000	0.00000	1included	K562	UCHL5
SE	BCR	ENSG00000186716.15	chr22	+	23610594	23610831			23603541	23603727	23613718	23613779	-0.12900	0.00001	0.00019	excluded	K562	PUS1
A5SS	BCR	ENSG00000186716.15	chr22	+	23653883	23654105			23653883	23654023	23655073	23655208	0.11000	0.00005	0.00692	longer	HepG2	SF3A3
A5SS	BCR	ENSG00000186716.15	chr22	+	23653883	23654105			23653883	23654023	23655073	23655208	-0.07300	0.00005	0.01154	shorter	HepG2	AKAP1
SE	BCR	ENSG00000186716.15	chr22	+	23610594	23610831			23603541	23603727	23613718	23613779	-0.07900	0.00084	0.02995	excluded	K562	UTP18
SE	BCR	ENSG00000186716.15	chr22	+	23656154	23656260			23655073	23655208	23656738	23656901	0.26100	0.00097	0.04473	included	HepG2	SFPQ
SE	BCR	ENSG00000186716.15	chr22	+	23656154	23656260			23655073	23655208	23656738	23656901	0.06100	0.00152	0.04255	included	HepG2	SF3A3
SE	BCR	ENSG00000186716.15	chr22	+	23610594	23610831			23603541	23603727	23613718	23613779	-0.06600	0.00197	0.04570	excluded	K562	RBM15
SE	BCR	ENSG00000186716.15	chr22	+	23656154	23656260			23655073	23655208	23656738	23656901	0.13600	0.00537	0.09826	included	K562	AGGF1
A3SS	BCR	ENSG00000186716.15	chr22	+	23655043	23655208			23655073	23655208	23653883	23654023	0.05500	0.02010	0.09577	longer	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BCR

General Information

Functions

Localization

Domains (AlphaFold: BCR)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BCR is not avaliable on ENCORE database.

63 proteins are bound to BCR RNA:

eCLIP assay for BCR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BCR is not available on ENCORE database.

72 RBPs can affect the gene expression of BCR :

The Knockdown/knockout RNA-Seq assay for BCR is not available on ENCORE database.

9 RBPs can affect the splicing of BCR :

The Knockdown/knockout RNA-Seq assay for BCR is not avaliable on ENCORE database.