RP11-1L9.1

General Information

Gene Name       : RP11-1L9.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-1L9.1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-1L9.1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-1L9.1 RNA is bound by 2 proteins.  







eCLIP assay for RP11-1L9.1 is not avaliable on ENCORE database.





2 proteins are bound to RP11-1L9.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1339554613395622+intron-Distal,intron-Proximal5.241418.06678K562TARDBP
chrX1339576613395886+intron-Distal3.566173.48567K562SLTM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-1L9.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-1L9.1 is not available on ENCORE database.

  • 7 RBPs can affect the levels of RP11-1L9.1.  








The Knockdown/knockout RNA-Seq assay for RP11-1L9.1 is not available on ENCORE database.





7 RBPs can affect the gene expression of RP11-1L9.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-1L9.1ENSG00000226434.141.1194013.193301.639902.939901.67300K562ABCF1
RP11-1L9.1ENSG00000226434.135.8967010.094401.830203.135401.39640K562ESF1
RP11-1L9.1ENSG00000226434.113.2952034.02390-1.355602.168501.37840K562HNRNPU
RP11-1L9.1ENSG00000226434.14.7943033.69240-2.813004.563903.60070K562PRPF8
RP11-1L9.1ENSG00000226434.19.9826034.31200-1.781202.798101.97660K562RPS19
RP11-1L9.1ENSG00000226434.134.1558011.084301.623502.676801.32620K562TRIP6
RP11-1L9.1ENSG00000226434.1109.5436056.723900.949403.540702.54230K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-1L9.1 is not available on ENCORE database.





4 RBPs can affect the splicing of RP11-1L9.1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERP11-1L9.1ENSG00000226434.1chrX+133984711339856713395306133954541341338013413511-0.190000.000140.00226excludedK562AQR
SERP11-1L9.1ENSG00000226434.1chrX+133977161339791713395306133954541341338013413511-0.491000.000110.06398excludedK562ABCF1
SERP11-1L9.1ENSG00000226434.1chrX+134133801341351113395306133954541342083313421125-0.396000.000170.00509excludedK562U2AF1
MXERP11-1L9.1ENSG00000226434.1chrX+1339771613397917133984711339854713395306133954541341338013413511-0.395000.000320.019742includedK562FXR1
MXERP11-1L9.1ENSG00000226434.1chrX+13397716133979171339847113398567133953061339545413413380134135110.243000.012520.076011includedK562AQR
MXERP11-1L9.1ENSG00000226434.1chrX+1339847113398567134022351340228913395306133954541341338013413511-0.865000.000590.005712includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-1L9.1 is not avaliable on ENCORE database.