RMND5A

General Information

Gene Name       : RMND5A
Gene ID             : ENSG00000153561.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RMND5A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RMND5AENSG00000153561.1219.6822.8921.29ENCSR000AEF
HepG2RMND5AENSG00000153561.1225.2237.7931.50ENCSR985KAT
K562RMND5AENSG00000153561.1220.8029.2625.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RMND5A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RMND5A RNA is bound by 16 proteins.  







eCLIP assay for RMND5A is not avaliable on ENCORE database.





16 proteins are bound to RMND5A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr28700483787004876+3'-UTR3.829303.12167HepG2FUBP3
chr28700391487003951+3'-UTR4.045443.90287K562LIN28B
chr28700089487000970+3'-UTR4.5009012.38199HepG2FUBP3
chr28700247187002546+3'-UTR4.594124.46521HepG2TIA1
chr28700218187002227+3'-UTR3.616774.63912HepG2LIN28B
chr28700448687004590+3'-UTR4.041558.98547HepG2FUBP3
chr28700462187004683+3'-UTR4.413265.30489K562TARDBP
chr28700107387001127+3'-UTR3.399274.23616K562TIA1
chr28700132887001393+3'-UTR4.093784.24308HepG2TIAL1
chr28700355587003567+3'-UTR3.132565.56979K562YBX3
chr28700403287004115+3'-UTR3.772124.36355HepG2LIN28B
chr28700468987004758+3'-UTR3.6626714.38705K562PUM2
chr28700163087001742+3'-UTR3.592458.47737K562YBX3
chr28700356787003590+3'-UTR3.049665.38711K562YBX3
chr28700317887003250+3'-UTR4.225793.98716K562IGF2BP1
chr28700447887004620+3'-UTR4.8297222.51241K562UPF1
chr28700472287004771+3'-UTR3.780824.46957K562TIA1
chr28700212687002184+3'-UTR5.9228215.71443K562LIN28B
chr28700207987002181+3'-UTR4.565888.30847HepG2LIN28B
chr28700447387004529+3'-UTR3.438515.75623K562FAM120A
chr28700508587005120+3'-UTR4.245803.32080HepG2FUBP3
chr28700104587001146+3'-UTR4.2605819.30049HepG2FUBP3
chr28700371487003781+3'-UTR3.574654.81657K562IGF2BP1
chr28700133087001392+3'-UTR3.293704.75109K562UPF1
chr28700218487002232+3'-UTR4.619665.87734K562LIN28B
chr28700455087004600+3'-UTR3.067285.07082K562FAM120A
chr28700449987004594+3'-UTR5.4398824.25149K562TARDBP
chr28700162487001689+3'-UTR4.7274112.71765K562LIN28B
chr28700247987002583+3'-UTR3.7836111.69309K562TIA1
chr28700403487004115+3'-UTR6.0062517.29795K562LIN28B
chr28700446387004531+3'-UTR4.175165.16766HepG2TIA1
chr28700126387001313+3'-UTR4.3165421.78569HepG2FUBP3
chr28700448787004600+3'-UTR6.0913911.56168K562DDX6
chr28700131387001406+3'-UTR4.6794522.78571HepG2FUBP3
chr28700155687001619+3'-UTR5.564058.26964HepG2FUBP3
chr28700072687000795+3'-UTR3.606636.16886K562YBX3
chr28694756086947608+5'-UTR3.613808.12455HepG2DDX3X
chr28694750986947560+5'-UTR3.718524.00968HepG2DDX3X
chr28694767986947750+5'-UTR3.8825616.88436HepG2DDX3X
chr28699879786998837+CDS,intron-Proximal3.650844.51739HepG2BCLAF1
chr28699214886992180+CDS,intron-Proximal3.478464.30200K562LIN28B
chr28698065186980682+CDS,intron-Proximal4.300234.78556K562LIN28B
chr28694782786947886+CDS3.361224.84415HepG2DDX3X
chr28698065886980684+CDS,intron-Proximal3.480923.54620HepG2LIN28B
chr28696803586968104+CDS,intron-Proximal3.591925.76944HepG2U2AF2
chr28699213486992195+CDS,intron-Proximal4.215886.86842HepG2U2AF2
chr28699214886992190+CDS,intron-Proximal4.721434.60263HepG2LIN28B
chr28699278886992854+intron-Distal,intron-Proximal3.859097.07404HepG2U2AF2
chr28698498286985061+intron-Distal4.850895.72853HepG2HNRNPM
chr28698809886988176+intron-Distal4.104187.97776K562TARDBP
chr28696940886969495+intron-Distal4.419643.60235HepG2HNRNPM
chr28699316286993229+intron-Proximal3.778043.45805K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RMND5A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RMND5A is not available on ENCORE database.

  • 108 RBPs can affect the levels of RMND5A.  








The Knockdown/knockout RNA-Seq assay for RMND5A is not available on ENCORE database.





108 RBPs can affect the gene expression of RMND5A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RMND5AENSG00000153561.81351.984901657.34260-0.293802.332201.34440HepG2AATF
RMND5AENSG00000153561.81193.615201979.69950-0.7299021.6606020.31980HepG2ACO1
RMND5AENSG00000153561.82437.511401772.370500.459604.515103.27890HepG2ADAR
RMND5AENSG00000153561.81709.452904451.44470-1.3807027.5732026.09960HepG2AKAP1
RMND5AENSG00000153561.82416.574401989.126000.280703.851502.96000HepG2AKAP8L
RMND5AENSG00000153561.85010.374603683.225000.443804.404103.42300HepG2ASCC1
RMND5AENSG00000153561.82429.508103019.92190-0.313805.004904.12630HepG2AUH
RMND5AENSG00000153561.8867.435901716.00120-0.9842012.6985010.61580HepG2BCCIP
RMND5AENSG00000153561.8748.480601491.05000-0.9943013.4297011.65830HepG2BCLAF1
RMND5AENSG00000153561.83043.909401318.970401.2064030.4797028.86030HepG2BOP1
RMND5AENSG00000153561.8822.548501979.41990-1.2669061.5506059.39820HepG2CKAP4
RMND5AENSG00000153561.82031.077101210.872300.7461010.624009.36500HepG2CPSF6
RMND5AENSG00000153561.81359.687801059.932100.359202.786901.70730HepG2CSTF2
RMND5AENSG00000153561.82157.401502524.88020-0.226902.473401.85890HepG2CELF1
RMND5AENSG00000153561.82262.713902714.88080-0.262804.644703.72150HepG2DAZAP1
RMND5AENSG00000153561.81076.000101831.00770-0.7670016.9543015.29310HepG2DDX19B
RMND5AENSG00000153561.82772.168301789.499000.6314010.871609.10630HepG2DDX24
RMND5AENSG00000153561.8689.033301687.19650-1.2920020.9793019.14680HepG2DDX55
RMND5AENSG00000153561.82299.349101375.039200.741704.671003.41150HepG2DDX59
RMND5AENSG00000153561.82465.496601880.554600.390603.525102.38950HepG2DDX5
RMND5AENSG00000153561.82461.319103662.90000-0.573605.567404.71820HepG2DDX6
RMND5AENSG00000153561.82423.206001894.074900.355302.390001.75310HepG2DKC1
RMND5AENSG00000153561.81012.455301784.66670-0.8178019.7218018.03020HepG2DNAJC21
RMND5AENSG00000153561.81491.484301768.96360-0.246203.380302.67270HepG2DNAJC2
RMND5AENSG00000153561.81403.403501763.07230-0.329202.298501.45630HepG2EEF2
RMND5AENSG00000153561.81143.136503521.37630-1.6231042.4246040.32380HepG2EIF2S1
RMND5AENSG00000153561.82479.676201727.087300.521707.653406.01820HepG2EIF3G
RMND5AENSG00000153561.83132.733503891.60330-0.312901.963001.42070HepG2EIF4A3
RMND5AENSG00000153561.82764.250603788.89120-0.454903.031902.31470HepG2EIF4B
RMND5AENSG00000153561.82705.160001862.491300.538406.895605.26690HepG2ESF1
RMND5AENSG00000153561.84485.160003467.251000.371307.667206.75080HepG2ETF1
RMND5AENSG00000153561.81291.984201934.65390-0.582508.280206.84640HepG2EWSR1
RMND5AENSG00000153561.8976.088301279.14470-0.390104.004702.57000HepG2FAM120A
RMND5AENSG00000153561.81596.568302170.82750-0.443303.178202.35990HepG2FIP1L1
RMND5AENSG00000153561.81919.031701212.977700.661702.609501.62410HepG2FTO
RMND5AENSG00000153561.82448.447003926.25730-0.681309.104807.91390HepG2FXR1
RMND5AENSG00000153561.81534.505901939.68640-0.338002.249601.33530HepG2GNB2L1
RMND5AENSG00000153561.82427.289601372.578700.8224010.692909.49020HepG2GPKOW
RMND5AENSG00000153561.81447.813301890.13770-0.384606.095404.71510HepG2HDGF
RMND5AENSG00000153561.82167.992602495.04610-0.202702.143401.30940HepG2HNRNPA2B1
RMND5AENSG00000153561.81665.214101375.099400.276103.074702.32130HepG2HNRNPF
RMND5AENSG00000153561.82799.801403687.89240-0.397504.023403.19500HepG2HNRNPK
RMND5AENSG00000153561.82174.714602473.05310-0.185502.449601.81120HepG2HNRNPL
RMND5AENSG00000153561.81717.745701309.880700.391003.130802.46610HepG2HNRNPLL
RMND5AENSG00000153561.81309.758402365.06770-0.852609.487907.28940HepG2HSPD1
RMND5AENSG00000153561.81702.828301354.079000.330503.208602.43320HepG2IGF2BP1
RMND5AENSG00000153561.81487.430603474.33510-1.223907.423505.86580HepG2IGF2BP3
RMND5AENSG00000153561.81229.786802033.63260-0.7257025.1277023.19150HepG2ILF2
RMND5AENSG00000153561.82671.582303723.85430-0.479103.495302.35210HepG2KHSRP
RMND5AENSG00000153561.81445.335401900.01010-0.394603.473002.20150HepG2LARP7
RMND5AENSG00000153561.81434.220201995.42950-0.476404.648503.06090HepG2LIN28B
RMND5AENSG00000153561.81448.956301757.27960-0.278302.104501.39460HepG2MSI2
RMND5AENSG00000153561.81854.826401335.994200.473302.510601.59060HepG2MTPAP
RMND5AENSG00000153561.83248.466904042.70690-0.315602.208701.64080HepG2NCBP2
RMND5AENSG00000153561.82124.134002692.06940-0.341804.343203.38860HepG2NOL12
RMND5AENSG00000153561.8733.643501549.34000-1.078508.535906.57710HepG2NONO
RMND5AENSG00000153561.82342.739601161.488401.0121019.3970017.64780HepG2NSUN2
RMND5AENSG00000153561.82550.611303600.42010-0.497304.886503.93800HepG2PABPC4
RMND5AENSG00000153561.81364.585501970.62430-0.5302010.602409.12170HepG2PARN
RMND5AENSG00000153561.81597.395202296.65760-0.523804.278202.03140HepG2PPIG
RMND5AENSG00000153561.81787.970601301.480200.458103.882502.94570HepG2PRPF8
RMND5AENSG00000153561.82599.993503470.14110-0.416508.776507.91320HepG2PTBP1
RMND5AENSG00000153561.83733.436602725.974100.453607.248206.17930HepG2PUM2
RMND5AENSG00000153561.82625.189402016.474400.380507.653006.71220HepG2PUS1
RMND5AENSG00000153561.84446.257503758.223100.242402.735002.11340HepG2QKI
RMND5AENSG00000153561.83083.604102256.190700.450602.180401.54820HepG2RAVER1
RMND5AENSG00000153561.81507.281002354.87290-0.643709.014907.58450HepG2RBM15
RMND5AENSG00000153561.82171.407902897.98510-0.416406.811706.08400HepG2RBM22
RMND5AENSG00000153561.84103.748503410.838600.266702.275301.65880HepG2RBM25
RMND5AENSG00000153561.83276.096603861.92390-0.237303.412902.82530HepG2NELFE
RMND5AENSG00000153561.8946.803301392.64730-0.556706.731805.81920HepG2RPS19
RMND5AENSG00000153561.81064.998401397.74710-0.392303.004702.02320HepG2SERBP1
RMND5AENSG00000153561.84086.657602861.985300.513803.769902.97790HepG2SF3A3
RMND5AENSG00000153561.81752.975101296.500400.435104.117003.27210HepG2SF3B1
RMND5AENSG00000153561.82231.401503612.84340-0.6952022.7887021.36870HepG2SF3B4
RMND5AENSG00000153561.8815.787502067.56550-1.3417073.2339070.83440HepG2SMN1
RMND5AENSG00000153561.81149.205202298.68660-1.0002011.646009.61590HepG2SMNDC1
RMND5AENSG00000153561.83519.608101442.592201.2867016.4549014.57420HepG2SNRNP70
RMND5AENSG00000153561.84317.524203273.176200.399409.959109.16830HepG2SRFBP1
RMND5AENSG00000153561.82742.356303771.03510-0.4595011.8417011.00910HepG2SRSF1
RMND5AENSG00000153561.82728.121101395.103600.9674012.3454010.13680HepG2SRSF3
RMND5AENSG00000153561.83137.626602537.308800.306304.941204.14270HepG2SRSF5
RMND5AENSG00000153561.81777.973001350.994300.396106.128405.15720HepG2SRSF7
RMND5AENSG00000153561.83660.555803067.945400.254703.347602.75240HepG2SRSF9
RMND5AENSG00000153561.83832.748702841.906900.4314010.521509.64630HepG2SSB
RMND5AENSG00000153561.82163.809802885.62420-0.415309.737008.69030HepG2SUCLG1
RMND5AENSG00000153561.81023.444701466.15020-0.518605.922704.57450HepG2SUPT6H
RMND5AENSG00000153561.82935.394801679.562000.8054010.284809.11820HepG2SUPV3L1
RMND5AENSG00000153561.8619.160501276.83250-1.0442016.8506015.32220HepG2TARDBP
RMND5AENSG00000153561.81590.968401934.45890-0.282002.766502.26550HepG2TIAL1
RMND5AENSG00000153561.81291.038901951.82660-0.5963013.7818012.65920HepG2TRIM56
RMND5AENSG00000153561.83175.579002510.589200.338903.799102.75970HepG2TUFM
RMND5AENSG00000153561.81883.691302657.41380-0.496504.594903.49750HepG2UBE2L3
RMND5AENSG00000153561.83346.404802538.146300.398708.901207.76860HepG2UPF1
RMND5AENSG00000153561.82157.249601550.732300.476106.660705.69280HepG2ZC3H8
RMND5AENSG00000153561.82493.577602791.47090-0.162802.150301.65060HepG2ZNF622
RMND5AENSG00000153561.83194.153802253.538000.503103.600502.10390HepG2ZRANB2
RMND5AENSG00000153561.83852.056402660.988000.533606.680605.83300K562AQR
RMND5AENSG00000153561.81322.140901708.54990-0.369904.799402.98860K562BCCIP
RMND5AENSG00000153561.81260.937801651.08540-0.388905.897404.47710K562BCLAF1
RMND5AENSG00000153561.81756.479602301.84790-0.390103.762902.25840K562CIRBP
RMND5AENSG00000153561.82183.579703189.41590-0.546606.964204.63140K562DDX19B
RMND5AENSG00000153561.81416.633001943.30060-0.456007.935705.85850K562EIF2S1
RMND5AENSG00000153561.81783.790202135.23930-0.259502.843602.11640K562EIF2S2
RMND5AENSG00000153561.81530.264001848.41280-0.272502.070201.35680K562EIF4A3
RMND5AENSG00000153561.81172.878001664.56650-0.505107.776505.69510K562EIF4B
RMND5AENSG00000153561.83866.242903267.113200.242803.428302.38590K562EIF4G2
RMND5AENSG00000153561.81328.316201613.45650-0.280602.638301.38080K562EWSR1
RMND5AENSG00000153561.81468.846101973.95100-0.426404.250103.18310K562FIP1L1
RMND5AENSG00000153561.82516.062601790.340700.490803.559602.73370K562G3BP2
RMND5AENSG00000153561.81979.497202845.51290-0.523607.390406.14030K562GRSF1
RMND5AENSG00000153561.8976.445901355.95510-0.473704.946004.17020K562HNRNPC
RMND5AENSG00000153561.81087.545501623.61220-0.578105.361504.01180K562HNRNPM
RMND5AENSG00000153561.81662.957702676.24550-0.6865010.292808.78300K562HSPD1
RMND5AENSG00000153561.81523.833602184.13190-0.519406.367304.43700K562IGF2BP3
RMND5AENSG00000153561.81000.682601375.04340-0.458503.697401.94800K562LIN28B
RMND5AENSG00000153561.81145.170901501.55930-0.390902.781201.48540K562NONO
RMND5AENSG00000153561.8976.384601323.75950-0.439103.772902.06680K562PHF6
RMND5AENSG00000153561.81610.535802240.83830-0.476505.069303.90240K562PPIG
RMND5AENSG00000153561.8803.050501215.72910-0.598306.559405.06990K562PSIP1
RMND5AENSG00000153561.81836.612602192.91330-0.255802.224101.61850K562PTBP1
RMND5AENSG00000153561.84368.487803564.688100.293302.704501.89720K562PUF60
RMND5AENSG00000153561.81653.344302103.10220-0.347103.047402.15980K562RBM22
RMND5AENSG00000153561.8828.807801051.37900-0.343202.361301.43200K562SRFBP1
RMND5AENSG00000153561.81407.978902149.71220-0.610509.628708.32210K562SRSF1
RMND5AENSG00000153561.81106.969902175.80850-0.9749015.5685013.62790K562TARDBP
RMND5AENSG00000153561.8955.444401242.13300-0.378602.874101.90700K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RMND5A is not available on ENCORE database.





1 RBPs can affect the splicing of RMND5A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSRMND5AENSG00000153561.8chr2+8700044987000548870004708700054886998680869988350.091000.000000.00000longerK562AQR
A3SSRMND5AENSG00000153561.8chr2+8699212886992316869921498699231686980580869806810.366000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RMND5A is not avaliable on ENCORE database.