CLCN5

General Information

Gene Name       : CLCN5
Gene ID             : ENSG00000171365.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLCN5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLCN5ENSG00000171365.163.472.102.79ENCSR000AEF
HepG2CLCN5ENSG00000171365.169.6313.1011.37ENCSR985KAT
K562CLCN5ENSG00000171365.165.224.764.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLCN5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLCN5 RNA is bound by 7 proteins.  







eCLIP assay for CLCN5 is not avaliable on ENCORE database.





7 proteins are bound to CLCN5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4985739349857458+3'-UTR4.419764.32097HepG2FUBP3
chrX4986099449861092+3'-UTR3.275404.08649HepG2FAM120A
chrX4985745849857518+3'-UTR3.347574.56889HepG2FUBP3
chrX4986268049862756+3'-UTR3.337514.39142HepG2PCBP2
chrX4986288149862941+3'-UTR3.691334.59124HepG2FUBP3
chrX4985112949851192+CDS4.406703.19000HepG2SND1
chrX4977333649773365+intron-Distal3.971833.11730HepG2DGCR8
chrX4977786949777923+intron-Distal4.830304.69912HepG2DGCR8
chrX4977786549777922+intron-Distal4.644083.46884K562DGCR8
chrX4977369849773772+intron-Distal5.402717.12974HepG2DGCR8
chrX4976771149767759+intron-Distal3.739003.11730HepG2DGCR8
chrX4977306049773110+intron-Distal4.818046.04484K562DGCR8
chrX4977370249773795+intron-Distal5.186527.16906K562DGCR8
chrX4977406349774104+intron-Distal4.127813.61881HepG2DGCR8
chrX4976779749767833+intron-Distal5.6440811.34411K562DGCR8
chrX4977347849773572+intron-Distal4.400864.04504HepG2DROSHA
chrX4972106949721157+intron-Distal3.775063.24603K562KHSRP
chrX4977350149773568+intron-Distal5.264589.05894K562DGCR8
chrX4976778949767832+intron-Distal5.759749.26833HepG2DGCR8
chrX4977428449774328+intron-Distal4.562854.42847HepG2DGCR8
chrX4976814549768185+intron-Distal4.966845.24066HepG2DGCR8
chrX4977434649774404+intron-Distal4.883754.15808HepG2DGCR8
chrX4977349849773574+intron-Distal4.583746.50583HepG2DGCR8
chrX4977434249774402+intron-Distal5.7977210.58144K562DGCR8
chrX4976802349768113+intron-Distal4.689236.32199HepG2DGCR8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLCN5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLCN5 is not available on ENCORE database.

  • 109 RBPs can affect the levels of CLCN5.  








The Knockdown/knockout RNA-Seq assay for CLCN5 is not available on ENCORE database.





109 RBPs can affect the gene expression of CLCN5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLCN5ENSG00000171365.111159.99430918.908100.336002.431901.42210HepG2AATF
CLCN5ENSG00000171365.111448.598201170.811000.307003.992503.28700HepG2ACO1
CLCN5ENSG00000171365.111425.514302124.35380-0.575504.996304.30790HepG2AKAP1
CLCN5ENSG00000171365.111821.287801316.158800.468505.112603.26200HepG2ATP5C1
CLCN5ENSG00000171365.112714.348301726.730900.6525017.6207016.16410HepG2AUH
CLCN5ENSG00000171365.11878.667101160.72520-0.401602.299701.44920HepG2BCCIP
CLCN5ENSG00000171365.111540.702501008.599800.611105.960404.69680HepG2BCLAF1
CLCN5ENSG00000171365.111454.537901092.680500.412604.164402.66920HepG2BUD13
CLCN5ENSG00000171365.111682.516901242.475500.437305.173304.15930HepG2CALR
CLCN5ENSG00000171365.11825.683501847.37590-1.1618015.3809013.24070HepG2CCAR1
CLCN5ENSG00000171365.112201.395301669.987800.398503.376702.52710HepG2CIRBP
CLCN5ENSG00000171365.111499.032201170.674700.356605.594604.70890HepG2CKAP4
CLCN5ENSG00000171365.111481.280801213.294000.287802.801301.63420HepG2DDX1
CLCN5ENSG00000171365.111684.91680992.185700.7639012.9934011.07850HepG2DDX24
CLCN5ENSG00000171365.111479.513101032.344200.519105.482203.70040HepG2DDX47
CLCN5ENSG00000171365.111038.22980827.142500.327802.644401.31940HepG2DDX52
CLCN5ENSG00000171365.111997.892201285.780800.635707.904806.28380HepG2DDX5
CLCN5ENSG00000171365.111418.048301147.466800.305402.211501.33520HepG2DHX30
CLCN5ENSG00000171365.111743.870801120.179400.6385013.7909012.51610HepG2DKC1
CLCN5ENSG00000171365.111347.383301179.156100.192301.916001.35470HepG2DNAJC2
CLCN5ENSG00000171365.111349.73410933.697600.531503.740202.44150HepG2AGO1
CLCN5ENSG00000171365.112157.122801680.561300.360102.708202.12210HepG2EIF2S1
CLCN5ENSG00000171365.111130.29930801.273400.496204.146403.05520HepG2EIF3D
CLCN5ENSG00000171365.111510.000701278.258000.240302.226701.46150HepG2EIF4G1
CLCN5ENSG00000171365.111655.057001224.501500.434603.864502.91270HepG2EIF4G2
CLCN5ENSG00000171365.111694.226201263.315600.423303.979602.68890HepG2ESF1
CLCN5ENSG00000171365.111503.514801144.196400.393903.889602.89860HepG2EWSR1
CLCN5ENSG00000171365.112402.493301472.515200.706107.690106.47510HepG2FIP1L1
CLCN5ENSG00000171365.112637.285301525.676200.789503.625502.45690HepG2FTO
CLCN5ENSG00000171365.112891.941701303.634601.1494014.4437012.16720HepG2FUS
CLCN5ENSG00000171365.11678.106701873.63150-1.4663030.9059028.90500HepG2FXR1
CLCN5ENSG00000171365.11989.66040713.448300.472003.681302.63440HepG2GEMIN5
CLCN5ENSG00000171365.112342.486401249.122000.907007.065804.77260HepG2HLTF
CLCN5ENSG00000171365.111394.133901759.71830-0.336002.572401.89760HepG2HNRNPK
CLCN5ENSG00000171365.113707.840801647.662001.1701026.0903024.47920HepG2HNRNPLL
CLCN5ENSG00000171365.111554.627201327.166100.228102.470701.89660HepG2HNRNPU
CLCN5ENSG00000171365.112198.241501766.950000.315002.228701.61480HepG2IGF2BP2
CLCN5ENSG00000171365.11836.502401355.65930-0.6966017.9534016.27310HepG2ILF2
CLCN5ENSG00000171365.111302.671601777.13250-0.448102.796901.78930HepG2KHSRP
CLCN5ENSG00000171365.11915.608401874.28420-1.0335016.0723014.55530HepG2MAGOH
CLCN5ENSG00000171365.11851.575501884.82880-1.1462017.3491015.87640HepG2MATR3
CLCN5ENSG00000171365.112260.232901460.959600.629508.342307.09280HepG2NSUN2
CLCN5ENSG00000171365.11354.35160599.09340-0.757604.400402.40050HepG2PA2G4
CLCN5ENSG00000171365.111347.75360810.146900.734204.563603.40360HepG2PABPC1
CLCN5ENSG00000171365.112304.399201718.345500.423303.534502.72410HepG2PABPC4
CLCN5ENSG00000171365.11928.265301313.68940-0.501007.886906.57490HepG2PARN
CLCN5ENSG00000171365.111399.043201672.09710-0.257202.941502.31890HepG2PCBP1
CLCN5ENSG00000171365.11875.994901183.72920-0.434305.309104.31740HepG2PPIL4
CLCN5ENSG00000171365.112137.785401297.379500.720405.136903.51570HepG2PRPF6
CLCN5ENSG00000171365.111854.80610880.420801.0749017.6501015.86730HepG2PRPF8
CLCN5ENSG00000171365.112903.971001226.477701.2434023.6687022.15710HepG2PUF60
CLCN5ENSG00000171365.111727.861001301.934600.408206.453905.62750HepG2PUM1
CLCN5ENSG00000171365.112554.935401192.564201.0991040.8951039.08600HepG2PUS1
CLCN5ENSG00000171365.113260.220001842.683200.8231022.0321020.51680HepG2QKI
CLCN5ENSG00000171365.112450.562301191.023701.040808.953607.73130HepG2RAVER1
CLCN5ENSG00000171365.11931.272301280.09890-0.459003.668802.51840HepG2RBM27
CLCN5ENSG00000171365.111514.479001893.51810-0.322204.296903.64930HepG2NELFE
CLCN5ENSG00000171365.111441.136001763.55210-0.291303.590302.90120HepG2RECQL
CLCN5ENSG00000171365.111715.446101169.801100.552203.431702.38030HepG2RPS10
CLCN5ENSG00000171365.111930.506101295.571700.575303.653701.89200HepG2RTF1
CLCN5ENSG00000171365.111132.62470782.556700.533305.079703.81660HepG2SERBP1
CLCN5ENSG00000171365.112011.063801630.866200.302202.013301.40660HepG2SF3B1
CLCN5ENSG00000171365.111228.079701771.40060-0.528509.984208.96500HepG2SF3B4
CLCN5ENSG00000171365.111363.538701175.948300.213402.136401.50640HepG2SLBP
CLCN5ENSG00000171365.111597.283601378.325000.212602.501201.88490HepG2SMN1
CLCN5ENSG00000171365.111533.486801871.55170-0.287404.136103.55970HepG2SRFBP1
CLCN5ENSG00000171365.112300.342201848.957400.315004.829904.24900HepG2SRSF1
CLCN5ENSG00000171365.111119.614201504.22420-0.426006.964706.16050HepG2SRSF9
CLCN5ENSG00000171365.11914.583501559.46100-0.769908.423706.36160HepG2SSRP1
CLCN5ENSG00000171365.112169.323101377.195600.6554018.4978017.11860HepG2SUCLG1
CLCN5ENSG00000171365.112126.505001579.170400.429202.809301.47070HepG2SUGP2
CLCN5ENSG00000171365.111286.30510994.435600.371203.617002.55100HepG2SUPT6H
CLCN5ENSG00000171365.111809.554901136.087500.671506.804405.81780HepG2SUPV3L1
CLCN5ENSG00000171365.112180.735801661.911300.391905.609704.86010HepG2TAF15
CLCN5ENSG00000171365.112297.691801605.931400.516705.953104.94680HepG2TARDBP
CLCN5ENSG00000171365.111748.335801259.722600.472804.595503.79600HepG2U2AF1
CLCN5ENSG00000171365.112528.829201431.936800.820402.335001.43670HepG2U2AF2
CLCN5ENSG00000171365.111864.067801594.910900.224902.642901.95750HepG2UPF1
CLCN5ENSG00000171365.11448.159201040.35350-1.2150012.120209.95460HepG2UPF2
CLCN5ENSG00000171365.112002.246801639.341300.288403.518802.35230HepG2UTP18
CLCN5ENSG00000171365.111880.243701218.541400.6257016.7809015.36410HepG2ZC3H8
CLCN5ENSG00000171365.113615.723001754.095901.0435064.8932063.16360HepG2ZNF622
CLCN5ENSG00000171365.11700.71010931.16570-0.410203.255802.54560K562AKAP8L
CLCN5ENSG00000171365.11347.48560741.50740-1.0935012.8747011.74290K562AQR
CLCN5ENSG00000171365.11709.32470976.99560-0.461905.265203.95860K562ATP5C1
CLCN5ENSG00000171365.11179.02720292.89670-0.710204.324502.94870K562CCAR1
CLCN5ENSG00000171365.11943.233501280.97700-0.441604.497503.24460K562CELF1
CLCN5ENSG00000171365.11473.34140677.63310-0.517605.499703.74780K562DDX21
CLCN5ENSG00000171365.11239.19580409.55710-0.775903.771102.24600K562EEF2
CLCN5ENSG00000171365.11461.50050630.10650-0.449303.923003.08950K562EIF2S2
CLCN5ENSG00000171365.11308.16280421.62420-0.452302.969302.14550K562EIF3G
CLCN5ENSG00000171365.11735.154601041.91570-0.503105.837204.49470K562EIF4G2
CLCN5ENSG00000171365.11395.72020724.40110-0.8723010.180608.43850K562FIP1L1
CLCN5ENSG00000171365.11732.06750573.558100.351902.090101.34160K562FMR1
CLCN5ENSG00000171365.11293.69530397.19990-0.435502.811502.20230K562FXR1
CLCN5ENSG00000171365.11525.30640839.73190-0.676806.767705.57780K562GRSF1
CLCN5ENSG00000171365.11412.83860595.81350-0.529303.300702.27520K562HNRNPM
CLCN5ENSG00000171365.11712.07140982.15750-0.463903.833202.90000K562HSPD1
CLCN5ENSG00000171365.11769.80270988.23900-0.360402.861702.02000K562KIF1C
CLCN5ENSG00000171365.11337.25790544.59050-0.691306.493505.17630K562MAGOH
CLCN5ENSG00000171365.11359.59970543.47180-0.595805.266303.93900K562MATR3
CLCN5ENSG00000171365.11620.87390381.410200.702907.203405.25490K562NCBP2
CLCN5ENSG00000171365.11467.82830687.63630-0.555707.236006.11040K562NSUN2
CLCN5ENSG00000171365.11722.19650525.718500.458002.800701.96420K562PCBP3
CLCN5ENSG00000171365.11603.33880403.231900.581303.156402.29690K562POLR2G
CLCN5ENSG00000171365.11517.72310822.31430-0.667506.671505.29960K562PPIG
CLCN5ENSG00000171365.11235.22600385.13870-0.711302.691001.95170K562PRPF8
CLCN5ENSG00000171365.11739.38380899.78520-0.283302.159601.62450K562RBM15
CLCN5ENSG00000171365.11349.53150507.30410-0.537403.890402.88230K562RBM22
CLCN5ENSG00000171365.11216.01730392.39230-0.861204.115203.11650K562RPS19
CLCN5ENSG00000171365.11209.13670393.88090-0.913304.832003.06560K562RRP9
CLCN5ENSG00000171365.11230.42650322.61000-0.485502.509301.31100K562SLBP
CLCN5ENSG00000171365.11411.48900695.12780-0.7564011.407709.66570K562SRPK2
CLCN5ENSG00000171365.11712.64560518.715000.458103.773302.95300K562SRSF1
CLCN5ENSG00000171365.11464.46830604.79560-0.380903.295302.00900K562SRSF7
CLCN5ENSG00000171365.11638.94250950.48480-0.573005.241503.32880K562SSRP1
CLCN5ENSG00000171365.11289.38010524.95140-0.859208.152606.85740K562TARDBP
CLCN5ENSG00000171365.11558.75000367.694900.603604.079802.69520K562U2AF1
CLCN5ENSG00000171365.11628.12900379.669800.726208.301206.89290K562U2AF2
CLCN5ENSG00000171365.11622.64370394.751100.657405.570504.07940K562UCHL5
CLCN5ENSG00000171365.11461.96140729.11380-0.658408.950707.74960K562UPF1
CLCN5ENSG00000171365.11421.20390623.88210-0.566805.050303.85100K562WDR3
CLCN5ENSG00000171365.11537.71800648.74780-0.270802.065301.32680K562WDR43
CLCN5ENSG00000171365.111182.17590878.644000.428004.079502.50520K562WRN
CLCN5ENSG00000171365.111169.29460672.579000.797803.783401.73200K562XPO5
CLCN5ENSG00000171365.11576.50220835.28620-0.534904.912503.70980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLCN5 is not available on ENCORE database.





1 RBPs can affect the splicing of CLCN5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLCN5ENSG00000171365.11chrX+4968821449688350496880124968809149689780496899240.406000.006920.07934includedK562PUS1
A5SSCLCN5ENSG00000171365.11chrX+4968801549688350496880154968809149689780496899240.430000.000230.01158longerK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLCN5 is not avaliable on ENCORE database.