TRMT112

General Information

Gene Name       : TRMT112
Gene ID             : ENSG00000173113.6
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TRMT112)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRMT112ENSG00000173113.660.74149.75105.25ENCSR000AEF
HepG2TRMT112ENSG00000173113.6171.39167.56169.47ENCSR985KAT
K562TRMT112ENSG00000173113.6192.34199.91196.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRMT112 is not avaliable on ENCORE database.



Proteins bound to RNA

  • TRMT112 RNA is bound by 17 proteins.  







eCLIP assay for TRMT112 is not avaliable on ENCORE database.





17 proteins are bound to TRMT112 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116408426564084294-3'-UTR,intron-Distal3.4289430.80137HepG2LARP4
chr116408423364084294-3'-UTR,intron-Distal3.417217.04519HepG2FUBP3
chr116408429464084317-3'-UTR,intron-Distal5.366305.78691HepG2FUBP3
chr116408456864084618-3'-UTR,CDS,intron-Distal,intron-Proximal4.2692513.33666K562PABPC4
chr116408457864084614-3'-UTR,CDS,intron-Distal,intron-Proximal4.432456.99054K562DDX55
chr116408455964084619-3'-UTR,CDS,intron-Distal,intron-Proximal4.7943625.39190K562RPS3
chr116408429564084322-3'-UTR,intron-Distal3.003498.05897HepG2LARP4
chr116408421064084265-3'-UTR,intron-Distal3.5739926.69205HepG2LARP4
chr116408423064084294-3'-UTR,intron-Distal4.1513327.55031K562NOLC1
chr116408458064084620-3'-UTR,CDS,intron-Distal,intron-Proximal4.7134714.96000K562LIN28B
chr116408429464084312-3'-UTR,intron-Distal4.1639413.54685K562NOLC1
chr116408452864084570-3'-UTR,CDS,intron-Distal,intron-Proximal3.008954.87202K562DDX6
chr116408453064084548-3'-UTR,CDS,intron-Distal3.564154.44552K562APOBEC3C
chr116408452964084568-3'-UTR,CDS,intron-Distal,intron-Proximal3.8934411.75795K562PABPC4
chr116408443364084441-3'-UTR,CDS,intron-Distal,intron-Proximal4.307177.73437HepG2RPS3
chr116408431264084338-3'-UTR,CDS,intron-Distal5.4418912.10827K562NOLC1
chr116408443264084440-3'-UTR,CDS,intron-Distal,intron-Proximal4.411724.13104K562APOBEC3C
chr116408445164084561-3'-UTR,CDS,intron-Distal,intron-Proximal5.161036.69228HepG2PRPF8
chr116408452764084565-3'-UTR,CDS,intron-Distal,intron-Proximal4.643599.83140HepG2RPS3
chr116408421964084294-3'-UTR,intron-Distal7.06028400.00000HepG2SUB1
chr116408452864084580-3'-UTR,CDS,intron-Distal,intron-Proximal3.702849.28252K562LIN28B
chr116408452964084559-3'-UTR,CDS,intron-Distal,intron-Proximal3.419856.20791K562RPS3
chr116408456564084616-3'-UTR,CDS,intron-Distal,intron-Proximal4.175656.19394HepG2RPS3
chr116408429464084334-3'-UTR,intron-Distal6.7406553.23447HepG2SUB1
chr116408420364084248-3'-UTR,intron-Distal3.111739.54268K562PABPC4
chr116408422264084299-3'-UTR,intron-Distal3.4872610.12648HepG2DDX55
chr116408453764084555-3'-UTR,CDS,intron-Distal5.0371512.20177HepG2SUB1
chr116408456664084617-3'-UTR,CDS,intron-Distal,intron-Proximal3.418828.39988K562APOBEC3C
chr116408491964084988-5'-UTR,CDS,intron-Distal,intron-Proximal3.565416.38429K562DROSHA
chr116408492464084989-5'-UTR,CDS,intron-Distal,intron-Proximal3.641143.53580K562EIF3G
chr116408491964084970-5'-UTR,CDS,intron-Distal,intron-Proximal3.4459714.41028HepG2RPS3
chr116408482164084837-5'-UTR,CDS,intron-Distal,intron-Proximal4.4781013.16793K562PABPC4
chr116408492064084987-5'-UTR,CDS,intron-Distal,intron-Proximal3.4170715.82716K562PABPC4
chr116408473964084778-5'-UTR,CDS,intron-Distal3.452954.40261K562APOBEC3C
chr116408492064085028-5'-UTR,CDS,intron-Distal,intron-Proximal3.1774924.89640K562DDX3X
chr116408480764084838-5'-UTR,CDS,intron-Distal,intron-Proximal3.120994.98439HepG2DDX3X
chr116408481564084839-5'-UTR,CDS,intron-Distal,intron-Proximal3.710855.15615HepG2RPS3
chr116408492064084988-5'-UTR,CDS,intron-Distal,intron-Proximal3.052288.27854K562DDX6
chr116408491564084974-5'-UTR,CDS,intron-Distal,intron-Proximal3.7677323.28663HepG2DDX3X
chr116408480864084834-5'-UTR,CDS,intron-Distal,intron-Proximal4.075185.56298K562DDX6
chr116408491964084980-5'-UTR,CDS,intron-Distal,intron-Proximal4.2930324.53744K562RPS3
chr116408473564084800-5'-UTR,CDS,intron-Distal,intron-Proximal4.540143.43975HepG2LIN28B
chr116408473464084762-5'-UTR,CDS,intron-Distal,intron-Proximal3.408569.63625K562YBX3
chr116408492064084977-5'-UTR,CDS,intron-Distal,intron-Proximal3.570704.71868K562GEMIN5
chr116408491864084985-5'-UTR,CDS,intron-Distal,intron-Proximal4.763276.35799K562PCBP1
chr116408473564084793-5'-UTR,CDS,intron-Distal,intron-Proximal4.1870916.17979K562LIN28B
chr116408481464084838-5'-UTR,CDS,intron-Distal,intron-Proximal4.125569.01101K562RPS3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRMT112 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRMT112 is not available on ENCORE database.

  • 89 RBPs can affect the levels of TRMT112.  








The Knockdown/knockout RNA-Seq assay for TRMT112 is not available on ENCORE database.





89 RBPs can affect the gene expression of TRMT112 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRMT112ENSG00000173113.2749.706301017.50150-0.440602.871201.95440HepG2BCLAF1
TRMT112ENSG00000173113.2700.03290896.61270-0.357102.817101.57330HepG2BUD13
TRMT112ENSG00000173113.21591.723502125.93470-0.417503.369102.68780HepG2DDX3X
TRMT112ENSG00000173113.2879.807801151.61680-0.388402.251901.54710HepG2DDX55
TRMT112ENSG00000173113.21159.054001826.42650-0.656106.354605.44740HepG2DDX6
TRMT112ENSG00000173113.2530.18570817.99600-0.625604.473803.05420HepG2AGO1
TRMT112ENSG00000173113.21130.375601755.58500-0.635106.780905.87970HepG2EIF2S1
TRMT112ENSG00000173113.2624.99210838.88160-0.424603.711302.48310HepG2EIF3G
TRMT112ENSG00000173113.21364.140601606.23150-0.235702.150701.39760HepG2EIF4G1
TRMT112ENSG00000173113.21894.462901538.641500.300002.341001.58870HepG2EIF4G2
TRMT112ENSG00000173113.2785.858201036.70670-0.399703.116101.96010HepG2ESF1
TRMT112ENSG00000173113.21520.466502097.20420-0.464008.768707.80080HepG2ETF1
TRMT112ENSG00000173113.2841.748001208.53070-0.521803.589502.72040HepG2FIP1L1
TRMT112ENSG00000173113.2719.05650958.43900-0.414602.529001.31360HepG2FKBP4
TRMT112ENSG00000173113.2157.35020651.14080-2.0490014.4650012.25210HepG2FTO
TRMT112ENSG00000173113.21408.663601928.01800-0.452804.025502.94340HepG2G3BP2
TRMT112ENSG00000173113.2538.82350736.75320-0.451402.749802.10990HepG2GPKOW
TRMT112ENSG00000173113.2434.60710886.52490-1.0284011.864508.64810HepG2GRWD1
TRMT112ENSG00000173113.2994.162101275.30000-0.359304.169203.30770HepG2HNRNPF
TRMT112ENSG00000173113.22263.853301839.131300.299702.288801.65010HepG2HNRNPK
TRMT112ENSG00000173113.2393.39560703.10220-0.837808.192407.17230HepG2HNRNPLL
TRMT112ENSG00000173113.21275.715601845.76990-0.532905.026304.14090HepG2IGF2BP2
TRMT112ENSG00000173113.21378.562301856.63320-0.429502.695701.70860HepG2KHSRP
TRMT112ENSG00000173113.21302.251301958.39060-0.588705.983105.02930HepG2MAGOH
TRMT112ENSG00000173113.2476.96940717.19340-0.588502.992801.98060HepG2MTPAP
TRMT112ENSG00000173113.21461.698802015.65200-0.463603.840303.09960HepG2NCBP2
TRMT112ENSG00000173113.2472.12060623.47460-0.401202.288401.60570HepG2NSUN2
TRMT112ENSG00000173113.2270.41360937.52460-1.793706.516005.11620HepG2PABPC1
TRMT112ENSG00000173113.21094.353801794.88890-0.713808.214306.98490HepG2PABPC4
TRMT112ENSG00000173113.2958.999401823.31010-0.9270028.3986026.79920HepG2PCBP1
TRMT112ENSG00000173113.21045.461601855.28540-0.8275022.3836021.11300HepG2PTBP1
TRMT112ENSG00000173113.21347.738101634.70110-0.278502.322301.70580HepG2PUM2
TRMT112ENSG00000173113.2891.964401092.45410-0.292502.147301.58810HepG2PUS1
TRMT112ENSG00000173113.21205.451502009.32160-0.7371015.3197014.01920HepG2QKI
TRMT112ENSG00000173113.21205.824901823.58780-0.596808.578407.44210HepG2RBM25
TRMT112ENSG00000173113.21154.265002064.75510-0.8390023.8580022.58130HepG2NELFE
TRMT112ENSG00000173113.21341.390001923.03760-0.5197010.196309.12830HepG2RECQL
TRMT112ENSG00000173113.2830.499101373.73080-0.726009.322908.18800HepG2RPLP0
TRMT112ENSG00000173113.2544.45390731.25200-0.425603.247702.58870HepG2RPS19
TRMT112ENSG00000173113.21238.24420890.583300.475407.815806.81370HepG2SAFB2
TRMT112ENSG00000173113.22081.58790964.609301.109603.631102.85530HepG2SF3A3
TRMT112ENSG00000173113.21194.278401931.59300-0.6937016.9353015.66250HepG2SF3B4
TRMT112ENSG00000173113.2508.25730774.32270-0.607403.349902.48470HepG2SNRNP70
TRMT112ENSG00000173113.21463.578601979.80990-0.435908.649507.89860HepG2SRFBP1
TRMT112ENSG00000173113.21670.357902016.16430-0.271503.639603.11590HepG2SRSF1
TRMT112ENSG00000173113.2933.700701252.92170-0.424305.666404.72790HepG2SRSF7
TRMT112ENSG00000173113.21080.138801640.25650-0.6027013.3832012.33200HepG2SRSF9
TRMT112ENSG00000173113.21400.985501718.94630-0.295103.814603.23390HepG2SSB
TRMT112ENSG00000173113.21291.901201812.20550-0.488303.820903.17980HepG2TAF15
TRMT112ENSG00000173113.21011.824801665.17170-0.7187012.3277010.59150HepG2TIA1
TRMT112ENSG00000173113.2821.00990980.41180-0.256002.356501.82780HepG2TRIM56
TRMT112ENSG00000173113.2994.808101593.72420-0.679902.868902.01830HepG2UBE2L3
TRMT112ENSG00000173113.2456.81370855.46170-0.9051017.7723016.30380HepG2UPF1
TRMT112ENSG00000173113.21291.30060825.913600.6447012.5105011.37750HepG2UTP3
TRMT112ENSG00000173113.21243.94550940.843100.402806.427205.68410HepG2ZNF622
TRMT112ENSG00000173113.22422.113701266.627100.9352033.1517031.27350K562AGGF1
TRMT112ENSG00000173113.21589.541201306.932700.282303.144601.51870K562AKAP1
TRMT112ENSG00000173113.21785.743601391.856000.359403.351902.24690K562AKAP8
TRMT112ENSG00000173113.22508.621401317.988900.9285018.8947016.88400K562AKAP8L
TRMT112ENSG00000173113.24647.365302358.046700.9787022.4066020.91850K562AQR
TRMT112ENSG00000173113.21916.657001382.898900.470805.058403.78200K562ATP5C1
TRMT112ENSG00000173113.2623.60350850.58690-0.447803.236302.07780K562CCAR1
TRMT112ENSG00000173113.21871.201401455.857000.362003.177901.79160K562CIRBP
TRMT112ENSG00000173113.21909.867101418.212900.429306.645405.19620K562DKC1
TRMT112ENSG00000173113.2416.20450865.19440-1.055708.073106.32290K562EIF3A
TRMT112ENSG00000173113.21111.881401383.64510-0.315502.342001.58500K562EIF4A3
TRMT112ENSG00000173113.21680.618201177.554000.513105.700604.45660K562FIP1L1
TRMT112ENSG00000173113.2522.86330685.22500-0.390102.254901.43430K562FTO
TRMT112ENSG00000173113.21730.575601438.939700.266102.925502.30570K562FXR1
TRMT112ENSG00000173113.2422.48620878.69120-1.056504.065503.16680K562G3BP2
TRMT112ENSG00000173113.23325.902802736.318000.281402.537701.81110K562GRSF1
TRMT112ENSG00000173113.2934.589601315.15490-0.492805.103802.41670K562GRWD1
TRMT112ENSG00000173113.2618.715701512.70520-1.2898030.5085028.60460K562HNRNPC
TRMT112ENSG00000173113.2992.357101351.12370-0.445204.522803.02090K562HNRNPF
TRMT112ENSG00000173113.21834.746501498.698700.291802.501501.50160K562HNRNPL
TRMT112ENSG00000173113.21734.63040968.633000.8405010.704208.58860K562HNRNPM
TRMT112ENSG00000173113.21609.615902070.98870-0.363604.570203.41700K562HNRNPU
TRMT112ENSG00000173113.22304.497801596.403700.529506.248205.06330K562HSPD1
TRMT112ENSG00000173113.22064.061101398.694600.561308.031306.43800K562KIF1C
TRMT112ENSG00000173113.21050.120801465.68250-0.481005.081503.10860K562LARP7
TRMT112ENSG00000173113.21929.076501338.911900.526706.110704.27110K562MAK16
TRMT112ENSG00000173113.22103.217301566.894200.424603.295102.28660K562MBNL1
TRMT112ENSG00000173113.21796.869701098.281200.710106.478404.91550K562NAA15
TRMT112ENSG00000173113.2454.580601969.73860-2.115402.540201.37060K562PABPC1
TRMT112ENSG00000173113.21013.158301480.40780-0.547104.948203.83570K562PCBP3
TRMT112ENSG00000173113.2820.174601135.47440-0.469304.922403.84960K562POLR2G
TRMT112ENSG00000173113.22246.532001336.869200.7487011.282609.29690K562PPIG
TRMT112ENSG00000173113.21873.736801092.219600.7786010.787009.29230K562PRPF8
TRMT112ENSG00000173113.21074.668801356.37550-0.335902.887001.96010K562PSIP1
TRMT112ENSG00000173113.22660.210803199.77620-0.266403.539302.45540K562PUM2
TRMT112ENSG00000173113.23362.278301307.040601.3630018.0440016.69200K562PUS1
TRMT112ENSG00000173113.22556.674701273.549501.005307.480606.53590K562RBM15
TRMT112ENSG00000173113.21002.418701399.35210-0.481304.299002.90000K562NELFE
TRMT112ENSG00000173113.21779.108301359.868200.387602.077301.45460K562SRSF1
TRMT112ENSG00000173113.21024.240501292.38680-0.335503.208401.57110K562SRSF9
TRMT112ENSG00000173113.21689.472801376.113800.295902.070401.45230K562TARDBP
TRMT112ENSG00000173113.2957.812801304.56140-0.445703.533002.47080K562TIAL1
TRMT112ENSG00000173113.21047.284001386.34080-0.404603.618002.50960K562TRIM56
TRMT112ENSG00000173113.21397.635601711.34500-0.292103.895903.05600K562UPF1
TRMT112ENSG00000173113.22137.471601325.246200.689503.701102.13830K562UTP18
TRMT112ENSG00000173113.21213.621101464.35060-0.270902.175701.40060K562WDR3
TRMT112ENSG00000173113.22153.258902656.50060-0.303002.696501.84620K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRMT112 is not available on ENCORE database.





9 RBPs can affect the splicing of TRMT112 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.055000.000000.00000includedHepG2SF3A3
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.057000.000000.00000includedHepG2U2AF2
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.074000.000000.00000includedHepG2PRPF8
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.080000.000000.00000includedK562PRPF8
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.096000.000790.02253includedHepG2FTO
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.073000.000000.00000includedHepG2PCBP1
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.062000.000000.00000includedHepG2TIAL1
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.056000.000000.00000includedHepG2SF3B4
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.072000.000000.00000includedK562EFTUD2
RITRMT112ENSG00000173113.2chr11-6408416264084619640841626408444064084529640846190.190000.000000.00000includedK562AQR
RITRMT112ENSG00000173113.2chr11-6408452964084770640845296408461964084735640847700.093000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRMT112 is not avaliable on ENCORE database.