TTC19

General Information

Gene Name       : TTC19
Gene ID             : ENSG00000011295.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TTC19)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TTC19ENSG00000011295.1516.7314.3215.53ENCSR000AEF
HepG2TTC19ENSG00000011295.1510.9516.9013.92ENCSR985KAT
K562TTC19ENSG00000011295.1517.7918.5618.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TTC19 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TTC19 RNA is bound by 21 proteins.  







eCLIP assay for TTC19 is not avaliable on ENCORE database.





21 proteins are bound to TTC19 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr171593117515931238+3'-UTR,intron-Distal5.5826614.37734K562LIN28B
chr171590719715907252+3'-UTR,5'-UTR,CDS,intron-Proximal4.618604.48002K562AQR
chr171593194915932045+3'-UTR,intron-Distal4.765665.94928K562UPF1
chr171592985215930017+3'-UTR,CDS,intron-Proximal3.759095.80880HepG2GRWD1
chr171592834915928486+3'-UTR,CDS,intron-Proximal3.691625.80880HepG2GRWD1
chr171590749615907545+3'-UTR,5'-UTR,CDS,intron-Proximal3.823895.09028HepG2U2AF2
chr171593199015932078+3'-UTR,intron-Distal3.9012711.87563K562PUM2
chr171592989515929967+3'-UTR,CDS4.480334.37348HepG2BCLAF1
chr171593176615931854+3'-UTR,intron-Distal4.600465.25389K562UPF1
chr171593116315931247+3'-UTR,intron-Distal3.680703.95400K562UPF1
chr171590978315909831+5'-UTR,CDS,intron-Proximal3.611844.46864HepG2BCLAF1
chr171590519215905246+5'-UTR,CDS,intron-Proximal5.094174.39274K562GPKOW
chr171590310115903225+5'-UTR,CDS3.424376.14786HepG2NCBP2
chr171590520715905275+5'-UTR,CDS,intron-Proximal3.701936.17334HepG2U2AF2
chr171590978715909889+5'-UTR,CDS,intron-Proximal3.627124.68902HepG2PPIG
chr171590345015903577+CDS,intron-Proximal3.921386.41974HepG2PPIG
chr171590355315903604+CDS,intron-Proximal4.7437314.79390HepG2PRPF8
chr171590317015903271+CDS3.988047.77439HepG2DDX3X
chr171590344115903531+CDS3.076673.22604HepG2SRSF1
chr171590432415904388+intron-Distal3.312413.54383HepG2HNRNPL
chr171590486015904936+intron-Distal3.035964.46004HepG2SUGP2
chr171591825615918392+intron-Distal3.5599810.92900K562KHSRP
chr171591938815919467+intron-Distal5.353709.27069HepG2U2AF2
chr171590409215904172+intron-Distal4.394164.77636HepG2HNRNPL
chr171590371415903794+intron-Distal,intron-Proximal3.352003.59523HepG2SUGP2
chr171591212115912223+intron-Distal4.8448610.89104HepG2PTBP1
chr171592713215927254+intron-Distal4.290864.51299HepG2SUGP2
chr171591849115918520+intron-Distal4.149739.06199K562KHSRP
chr171592576215925838+intron-Distal3.278593.59771HepG2QKI
chr171590398415904037+intron-Distal5.299786.42900HepG2PTBP1
chr171590550015905521+intron-Distal4.129933.21162HepG2HNRNPC
chr171590434315904398+intron-Distal4.091593.84389HepG2SUGP2
chr171591858915918659+intron-Distal4.138575.18845HepG2U2AF2
chr171590466415904731+intron-Distal3.101393.45713HepG2PTBP1
chr171591846015918491+intron-Distal5.9937419.23607K562KHSRP
chr171591839615918419+intron-Distal5.7309513.85867K562KHSRP
chr171591848015918550+intron-Distal4.556883.79000HepG2U2AF2
chr171591840315918504+intron-Distal4.174457.97263HepG2KHSRP
chr171591171715911772+intron-Distal3.860973.04956HepG2HNRNPL
chr171591215215912246+intron-Distal4.2412510.19865K562PTBP1
chr171591934415919388+intron-Distal4.363373.79000HepG2U2AF2
chr171590498515905045+intron-Distal3.151733.59523HepG2SUGP2
chr171590398515904038+intron-Distal5.185566.90462K562PTBP1
chr171591968715919806+intron-Distal3.961096.94220K562TARDBP
chr171590464615904776+intron-Distal4.253284.18579K562MATR3
chr171591841915918457+intron-Distal6.3940323.52307K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TTC19 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TTC19 is not available on ENCORE database.

  • 58 RBPs can affect the levels of TTC19.  








The Knockdown/knockout RNA-Seq assay for TTC19 is not available on ENCORE database.





58 RBPs can affect the gene expression of TTC19 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TTC19ENSG00000011295.11647.70480537.367800.269301.994401.46230HepG2ACO1
TTC19ENSG00000011295.111133.61830700.817500.693705.890905.14830HepG2AKAP1
TTC19ENSG00000011295.11368.44380699.06660-0.924007.715406.06890HepG2CCAR1
TTC19ENSG00000011295.11402.07700537.15490-0.417903.701002.95230HepG2CKAP4
TTC19ENSG00000011295.11513.35320843.80340-0.7170012.6982011.30080HepG2DAZAP1
TTC19ENSG00000011295.11320.91970567.35740-0.822004.330203.12170HepG2DDX59
TTC19ENSG00000011295.11349.68780554.39100-0.664804.683903.92440HepG2EIF2S1
TTC19ENSG00000011295.111133.93930987.236300.199801.822501.31360HepG2ETF1
TTC19ENSG00000011295.11475.44710357.323900.412002.346701.61930HepG2FUBP3
TTC19ENSG00000011295.11797.91160608.744500.390302.441001.60630HepG2G3BP2
TTC19ENSG00000011295.11390.31200566.35660-0.537103.181502.50040HepG2GPKOW
TTC19ENSG00000011295.11308.28470503.57350-0.707905.495904.54610HepG2HNRNPC
TTC19ENSG00000011295.11657.22320768.65160-0.225901.891401.31980HepG2HNRNPL
TTC19ENSG00000011295.11537.15510407.418000.398702.479401.57600HepG2HNRNPM
TTC19ENSG00000011295.11600.42000500.243000.263201.872901.36490HepG2HNRNPU
TTC19ENSG00000011295.11354.75550510.97890-0.526405.340404.34800HepG2ILF2
TTC19ENSG00000011295.11782.03900618.350100.338701.847401.30640HepG2MAGOH
TTC19ENSG00000011295.11468.62470621.81610-0.408102.051601.50280HepG2MATR3
TTC19ENSG00000011295.11349.22430477.90500-0.452602.788001.97720HepG2MSI2
TTC19ENSG00000011295.11235.44620463.44620-0.977004.883303.41050HepG2NONO
TTC19ENSG00000011295.11353.05680479.24560-0.440902.325401.63680HepG2NSUN2
TTC19ENSG00000011295.11692.91410565.528500.293002.140601.59520HepG2PCBP1
TTC19ENSG00000011295.11798.56250575.422300.472704.903504.21860HepG2PTBP1
TTC19ENSG00000011295.11560.76400798.70420-0.510304.554303.81130HepG2PUF60
TTC19ENSG00000011295.11724.88870847.84770-0.226002.012601.49040HepG2PUM1
TTC19ENSG00000011295.11676.46710847.23590-0.324702.470101.83680HepG2PUM2
TTC19ENSG00000011295.11596.79370825.15330-0.467404.532303.91180HepG2RBM22
TTC19ENSG00000011295.11852.68170565.618200.592105.978905.02240HepG2RBM25
TTC19ENSG00000011295.11839.95610640.409800.391203.472802.88160HepG2NELFE
TTC19ENSG00000011295.11593.92870765.80790-0.366703.750602.95350HepG2SLBP
TTC19ENSG00000011295.11381.55190575.63650-0.593303.389402.27120HepG2SRSF3
TTC19ENSG00000011295.11657.97420788.58950-0.261202.054201.50470HepG2SRSF5
TTC19ENSG00000011295.11798.71300508.737500.650709.537708.62030HepG2SRSF9
TTC19ENSG00000011295.11687.35720508.826500.433802.317801.32640HepG2STIP1
TTC19ENSG00000011295.11775.74650562.036800.464804.470403.78390HepG2TAF15
TTC19ENSG00000011295.11672.55540516.487300.380802.728201.89720HepG2TIA1
TTC19ENSG00000011295.11290.35910486.01950-0.743207.012906.28440HepG2TIAL1
TTC19ENSG00000011295.11626.40250825.90150-0.398902.188501.44890HepG2UBE2L3
TTC19ENSG00000011295.11397.96060624.85040-0.650908.872708.03580HepG2ZNF622
TTC19ENSG00000011295.11980.362301432.33270-0.547005.004604.25730K562AQR
TTC19ENSG00000011295.11233.00250418.11060-0.843506.970505.12490K562CCAR1
TTC19ENSG00000011295.11908.56340708.881900.357902.772801.98970K562CPSF6
TTC19ENSG00000011295.111936.393301461.924300.405405.651304.34430K562DKC1
TTC19ENSG00000011295.11442.06590683.06160-0.627805.496504.18330K562EFTUD2
TTC19ENSG00000011295.11542.37210731.20880-0.431002.500401.52340K562EIF3D
TTC19ENSG00000011295.11584.42350878.32330-0.587705.745604.56780K562EIF4A3
TTC19ENSG00000011295.11679.77330913.42310-0.426204.395103.65620K562FXR1
TTC19ENSG00000011295.111328.08700983.383100.433402.649601.96160K562G3BP2
TTC19ENSG00000011295.11479.40760676.82460-0.497503.846102.91730K562GPKOW
TTC19ENSG00000011295.11980.985901207.82300-0.300102.127301.45890K562GRSF1
TTC19ENSG00000011295.11378.15910781.58940-1.0474014.9338013.63130K562HNRNPC
TTC19ENSG00000011295.111753.019401441.749000.281902.086101.38020K562KIF1C
TTC19ENSG00000011295.11896.426401238.66880-0.466504.406403.33970K562MAGOH
TTC19ENSG00000011295.11853.764601236.23920-0.534005.344704.00570K562MATR3
TTC19ENSG00000011295.111276.613501704.97490-0.417404.028702.66630K562MSI2
TTC19ENSG00000011295.11585.83180906.37670-0.629609.741508.32320K562MTPAP
TTC19ENSG00000011295.111579.783001132.074800.480703.135102.18620K562NAA15
TTC19ENSG00000011295.11761.126801102.20850-0.534205.227103.86900K562PCBP2
TTC19ENSG00000011295.11503.14870664.70120-0.401702.482301.77130K562PRPF8
TTC19ENSG00000011295.11901.925101203.40330-0.416003.728702.96830K562PTBP1
TTC19ENSG00000011295.111361.289401745.25070-0.358503.194702.31950K562PUF60
TTC19ENSG00000011295.112252.644901856.528300.278902.642901.60150K562PUM1
TTC19ENSG00000011295.11774.775801154.21950-0.575105.211004.01500K562RBM22
TTC19ENSG00000011295.11853.050101124.91460-0.399102.942201.50150K562RBM34
TTC19ENSG00000011295.11843.631301023.10480-0.278302.067301.33000K562SF3B4
TTC19ENSG00000011295.11462.27240606.19320-0.391002.366101.43520K562SRFBP1
TTC19ENSG00000011295.11638.160901179.67490-0.8864011.6239010.18290K562SRSF1
TTC19ENSG00000011295.11601.026901194.04060-0.9904013.1253011.37820K562TARDBP
TTC19ENSG00000011295.11937.153301151.75210-0.297502.266801.53300K562TIA1
TTC19ENSG00000011295.11767.87990950.14490-0.307303.293102.37730K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TTC19 is not available on ENCORE database.





20 RBPs can affect the splicing of TTC19 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETTC19ENSG00000011295.11chr17+1591229115912514159097871590988215928330159284850.119000.000330.02553includedHepG2RBM22
SETTC19ENSG00000011295.11chr17+1591229115912514159097871590988215928330159284850.059000.005300.07953includedHepG2U2AF1
SETTC19ENSG00000011295.11chr17+1591229115912514159097871590988215928330159284850.096000.000200.00362includedHepG2U2AF2
SETTC19ENSG00000011295.11chr17+1592780215927896159097871590988215928330159284850.095000.002460.08207includedHepG2MATR3
SETTC19ENSG00000011295.11chr17+1592780215927896159097871590988215928330159284850.204000.000000.00000includedK562HNRNPC
A5SSTTC19ENSG00000011295.11chr17+1590343115903696159034311590355915905228159053390.115000.000100.00562longerK562PUS1
A5SSTTC19ENSG00000011295.11chr17+1590343115903696159034311590355915905228159053390.203000.000050.00143longerK562AQR
A5SSTTC19ENSG00000011295.11chr17+1590343115903696159034311590355915905228159053390.210000.000670.05175longerHepG2SF3A3
A5SSTTC19ENSG00000011295.11chr17+1590343115903676159034311590355915905228159053390.161000.000010.01504longerHepG2RBFOX2
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.112000.000620.05520includedHepG2DDX59
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.069000.000070.00195includedK562SF3B4
RITTC19ENSG00000011295.11chr17+159298531593210015929853159300161593068715932100-0.079000.002850.05082excludedHepG2PCBP2
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.106000.000160.00295includedHepG2SF3A3
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.078000.000000.00034includedK562HNRNPU
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.164000.000020.00027includedHepG2U2AF2
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.086000.000000.00066includedK562SRSF7
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.057000.000050.00102includedK562AGGF1
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.198000.003440.06698includedHepG2FTO
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.058000.000570.01613includedK562RBM22
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.142000.000030.00061includedHepG2U2AF1
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.054000.001220.02585includedK562U2AF1
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.076000.000030.00069includedK562U2AF2
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.122000.000000.00009includedHepG2NCBP2
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.116000.000020.00031includedHepG2SF3B4
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.061000.008590.06777includedHepG2RBM22
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.058000.004860.04843includedHepG2HNRNPK
RITTC19ENSG00000011295.11chr17+159298531593210015929853159300161593068715932100-0.100000.000270.02749excludedK562FXR2
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.179000.000000.00000includedK562AQR
RITTC19ENSG00000011295.11chr17+1592985315932100159298531593001615930687159321000.054000.003330.08552includedK562TARDBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TTC19 is not avaliable on ENCORE database.