FAM198B

General Information

Gene Name       : FAM198B
Gene ID             : ENSG00000164125.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM198B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM198BENSG00000164125.150.480.050.27ENCSR000AEF
HepG2FAM198BENSG00000164125.1524.9345.3335.13ENCSR985KAT
K562FAM198BENSG00000164125.150.570.800.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM198B is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM198B RNA is bound by 15 proteins.  







eCLIP assay for FAM198B is not avaliable on ENCORE database.





15 proteins are bound to FAM198B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4159045927159045972-3'-UTR,intron-Distal,intron-Proximal4.771577.89476HepG2FUBP3
chr4159046854159046913-3'-UTR,intron-Distal3.031584.83304HepG2FAM120A
chr4159045754159045870-3'-UTR,intron-Distal,intron-Proximal,polyA_site4.480725.07255HepG2KHSRP
chr4159045655159045737-3'-UTR,intron-Distal,intron-Proximal3.989253.77017HepG2CSTF2
chr4159092577159092677-3'-UTR,5'-UTR,intron-Distal3.753414.45064HepG2GRWD1
chr4159045770159045891-3'-UTR,intron-Distal6.7408618.41012HepG2FUBP3
chr4159045776159045860-3'-UTR,intron-Distal3.534993.82830HepG2LARP4
chr4159046291159046329-3'-UTR,intron-Distal3.123843.60337HepG2FUBP3
chr4159046763159046861-3'-UTR,intron-Distal3.224316.60912HepG2PCBP2
chr4159047093159047157-3'-UTR,intron-Distal3.926543.57526HepG2IGF2BP1
chr4159047052159047120-3'-UTR,intron-Distal3.229604.70908HepG2QKI
chr4159046079159046110-3'-UTR,intron-Distal3.440083.23424HepG2FUBP3
chr4159092626159092680-3'-UTR,5'-UTR,intron-Distal3.821757.77439HepG2DDX3X
chr4159046781159046838-3'-UTR,intron-Distal4.343454.59164HepG2IGF2BP1
chr4159047254159047309-3'-UTR,intron-Distal4.000904.62831HepG2PCBP2
chr4159094013159094086-5'-UTR,intron-Distal3.051173.07748HepG2U2AF1
chr4159094036159094122-5'-UTR,intron-Distal4.025675.65979HepG2PTBP1
chr4159091734159091794-CDS,intron-Distal3.730233.71734HepG2RBM15
chr4159091936159092003-CDS,intron-Distal3.773404.91603HepG2LIN28B
chr4159092409159092476-CDS,intron-Distal,intron-Proximal3.0932511.04627HepG2DDX3X
chr4159092315159092402-CDS,intron-Distal,intron-Proximal4.0445116.72391HepG2DDX3X
chr4159051995159052148-CDS,intron-Distal4.593224.89596HepG2LIN28B
chr4159092339159092404-CDS,intron-Distal,intron-Proximal4.047474.56106HepG2EIF3H
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM198B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM198B is not available on ENCORE database.

  • 121 RBPs can affect the levels of FAM198B.  








The Knockdown/knockout RNA-Seq assay for FAM198B is not available on ENCORE database.





121 RBPs can affect the gene expression of FAM198B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM198BENSG00000164125.112238.380701670.004100.422504.324503.01210HepG2AATF
FAM198BENSG00000164125.112911.261802370.955200.296105.150604.37210HepG2ACO1
FAM198BENSG00000164125.111726.507502183.05670-0.338502.687401.70310HepG2ADAR
FAM198BENSG00000164125.116710.157502788.919301.2665024.7428023.33150HepG2AKAP1
FAM198BENSG00000164125.113822.338002382.349200.682008.917007.63930HepG2AKAP8L
FAM198BENSG00000164125.111554.332102307.60630-0.570106.018104.88210HepG2ASCC1
FAM198BENSG00000164125.113673.513504483.72970-0.287504.845303.97800HepG2AUH
FAM198BENSG00000164125.111467.274802166.40970-0.562205.001503.82440HepG2BCLAF1
FAM198BENSG00000164125.111227.584802684.35620-1.1288010.630909.55680HepG2BOP1
FAM198BENSG00000164125.111160.154801787.24010-0.623408.379406.35570HepG2BUD13
FAM198BENSG00000164125.111061.817402192.38170-1.0460018.3368016.56070HepG2CIRBP
FAM198BENSG00000164125.113585.579702370.746100.5968021.9102020.43670HepG2CKAP4
FAM198BENSG00000164125.118181.518901776.270502.2034043.1628040.40760HepG2CNOT7
FAM198BENSG00000164125.111856.361102464.46820-0.408802.449501.79670HepG2CPSF6
FAM198BENSG00000164125.111091.897801964.53640-0.8474015.1428012.81090HepG2CPSF7
FAM198BENSG00000164125.111097.165202238.65550-1.0289027.9538025.11290HepG2YBX3
FAM198BENSG00000164125.112431.387501540.108200.658609.461507.66900HepG2CSTF2
FAM198BENSG00000164125.112295.471001709.366300.425202.611001.31150HepG2CSTF2T
FAM198BENSG00000164125.111881.671203024.07520-0.684508.193407.19840HepG2CELF1
FAM198BENSG00000164125.111715.499302192.93460-0.354204.073503.08460HepG2DDX19B
FAM198BENSG00000164125.111300.189002241.85730-0.7860019.5017016.99130HepG2DDX1
FAM198BENSG00000164125.111226.316501803.23240-0.556306.340804.96420HepG2DDX24
FAM198BENSG00000164125.111412.768502293.62880-0.699105.682003.91190HepG2DDX27
FAM198BENSG00000164125.111245.762501857.08430-0.576005.561903.66830HepG2DDX28
FAM198BENSG00000164125.111653.432602671.59450-0.692208.447407.40450HepG2DDX3X
FAM198BENSG00000164125.111265.479801802.00100-0.509905.161903.42810HepG2DDX47
FAM198BENSG00000164125.111597.842802451.19730-0.617405.692604.63020HepG2DDX55
FAM198BENSG00000164125.111357.703602337.24650-0.7836012.0380010.10680HepG2DDX5
FAM198BENSG00000164125.111234.946102294.90600-0.8940011.3139010.16450HepG2DDX6
FAM198BENSG00000164125.111162.004802120.22370-0.8676015.9729013.92670HepG2DHX30
FAM198BENSG00000164125.111465.941602268.44080-0.6299010.025008.89780HepG2DKC1
FAM198BENSG00000164125.111746.216002198.30270-0.332204.395203.52440HepG2DNAJC21
FAM198BENSG00000164125.111844.630002178.73010-0.240203.626002.89810HepG2DNAJC2
FAM198BENSG00000164125.111131.829301696.96390-0.584303.882602.55770HepG2AGO1
FAM198BENSG00000164125.111296.660101809.54970-0.480805.754704.11080HepG2EIF2S2
FAM198BENSG00000164125.112056.015001533.906500.422503.560602.54280HepG2EIF3D
FAM198BENSG00000164125.11969.644502438.13100-1.3302023.9703022.13180HepG2EIF4A3
FAM198BENSG00000164125.111767.473002373.81780-0.425502.573101.90790HepG2EIF4B
FAM198BENSG00000164125.112813.939005147.85000-0.8714037.1935035.45310HepG2ETF1
FAM198BENSG00000164125.111960.069201370.842700.515707.624205.66570HepG2FAM120A
FAM198BENSG00000164125.111471.497602040.31430-0.471503.718002.25410HepG2FKBP4
FAM198BENSG00000164125.112266.939203042.15250-0.424303.497601.62530HepG2FMR1
FAM198BENSG00000164125.111631.864502468.51970-0.597102.239801.33490HepG2FTO
FAM198BENSG00000164125.111779.169402459.90080-0.467404.361303.50680HepG2FXR1
FAM198BENSG00000164125.112380.941301365.758900.8017012.1880010.39470HepG2GEMIN5
FAM198BENSG00000164125.111638.751802793.89420-0.769706.055405.13480HepG2GPKOW
FAM198BENSG00000164125.112410.374301644.059300.551903.739802.44280HepG2GRSF1
FAM198BENSG00000164125.113174.146602200.864800.528203.376601.63100HepG2GTF2F1
FAM198BENSG00000164125.111450.280502263.76920-0.6424012.9306011.06600HepG2HDGF
FAM198BENSG00000164125.111347.815202219.36120-0.7195011.8424010.65590HepG2HNRNPA1
FAM198BENSG00000164125.112391.067402988.51920-0.321805.342904.11840HepG2HNRNPA2B1
FAM198BENSG00000164125.111914.359302888.00500-0.5932014.7180013.23610HepG2HNRNPF
FAM198BENSG00000164125.111884.436902310.60000-0.294102.227901.59620HepG2HNRNPK
FAM198BENSG00000164125.111904.896202962.49250-0.6371020.3633018.69730HepG2HNRNPL
FAM198BENSG00000164125.111391.154302666.24420-0.938508.166207.14730HepG2HNRNPLL
FAM198BENSG00000164125.112146.874101661.916000.369304.176703.02960HepG2HNRNPM
FAM198BENSG00000164125.111700.064602843.87920-0.7423015.4664013.90460HepG2IGF2BP1
FAM198BENSG00000164125.111152.972502319.57190-1.0085016.7636015.26930HepG2IGF2BP2
FAM198BENSG00000164125.11984.488602504.91040-1.3473084.0514081.13420HepG2ILF2
FAM198BENSG00000164125.113762.161601650.228501.1888016.7557013.87860HepG2KRR1
FAM198BENSG00000164125.114953.618403814.471300.376902.458401.67770HepG2LARP4
FAM198BENSG00000164125.113392.239602215.258700.614709.225507.12120HepG2LIN28B
FAM198BENSG00000164125.112018.050402460.75930-0.286101.879601.33420HepG2MAGOH
FAM198BENSG00000164125.113288.077402474.543500.410003.173202.50130HepG2MATR3
FAM198BENSG00000164125.112560.354401949.568000.393104.746903.70700HepG2MSI2
FAM198BENSG00000164125.111489.882001907.50340-0.356502.923301.46750HepG2NIP7
FAM198BENSG00000164125.113654.100402250.595800.699104.478803.06690HepG2NONO
FAM198BENSG00000164125.11680.168802363.97020-1.7972018.8198017.08530HepG2NSUN2
FAM198BENSG00000164125.11485.495201623.09170-1.7412012.5397010.61890HepG2PABPC1
FAM198BENSG00000164125.111872.730802209.69200-0.238702.941502.31890HepG2PCBP1
FAM198BENSG00000164125.11975.144302187.22830-1.1654039.8106037.23720HepG2PPIL4
FAM198BENSG00000164125.111502.866101891.16310-0.331602.099601.39160HepG2PRPF8
FAM198BENSG00000164125.113623.807602248.408500.6885022.0642020.80190HepG2PTBP1
FAM198BENSG00000164125.112334.414203078.14010-0.399004.867104.10360HepG2PUF60
FAM198BENSG00000164125.112360.101003267.44440-0.4693015.2572014.09630HepG2PUM1
FAM198BENSG00000164125.114101.344202435.158100.7520019.8725018.41230HepG2QKI
FAM198BENSG00000164125.114945.210704302.665000.200702.356401.86830HepG2RBM22
FAM198BENSG00000164125.113601.847802543.752100.501705.968504.50750HepG2RBM27
FAM198BENSG00000164125.112953.826002502.292500.239202.163601.67340HepG2NELFE
FAM198BENSG00000164125.112767.307202330.491600.247703.225802.56650HepG2RECQL
FAM198BENSG00000164125.112475.091703110.80770-0.329802.917102.21810HepG2RPLP0
FAM198BENSG00000164125.113148.754601492.520701.0769028.8810027.24810HepG2RPS19
FAM198BENSG00000164125.113099.170702346.067000.401503.998103.04500HepG2RPS2
FAM198BENSG00000164125.111233.756101782.35750-0.530702.807102.00200HepG2RPS3A
FAM198BENSG00000164125.111653.839302183.87640-0.401107.989406.98030HepG2SAFB2
FAM198BENSG00000164125.11784.543802639.18630-1.7502018.3847016.73350HepG2SF3B1
FAM198BENSG00000164125.111893.722002340.94750-0.305904.533603.80520HepG2SF3B4
FAM198BENSG00000164125.111764.809802951.17470-0.7418015.9052014.47690HepG2SLBP
FAM198BENSG00000164125.111948.051102546.82200-0.386709.309108.24000HepG2SMN1
FAM198BENSG00000164125.113815.833304859.72820-0.348908.255707.51750HepG2SRFBP1
FAM198BENSG00000164125.115325.139202443.416301.1238056.2271054.70450HepG2SRSF1
FAM198BENSG00000164125.114140.410302839.400200.544104.889703.52740HepG2SRSF3
FAM198BENSG00000164125.112055.026602837.30450-0.465409.533408.37480HepG2SRSF7
FAM198BENSG00000164125.111311.725301987.82680-0.5997012.2743011.25770HepG2SRSF9
FAM198BENSG00000164125.112948.298704219.44080-0.5172014.8074013.81020HepG2SSB
FAM198BENSG00000164125.113775.507501645.357801.1982021.6687018.70150HepG2SSRP1
FAM198BENSG00000164125.111095.548201608.98990-0.554504.397302.86870HepG2STAU1
FAM198BENSG00000164125.111085.389601550.01430-0.514102.935901.79970HepG2STIP1
FAM198BENSG00000164125.111400.470301993.65610-0.509503.030101.76920HepG2SUB1
FAM198BENSG00000164125.114207.999603456.378500.283805.317804.50580HepG2SUCLG1
FAM198BENSG00000164125.11909.302801626.58230-0.8390013.9670011.97700HepG2SUPT6H
FAM198BENSG00000164125.111128.431702440.20530-1.1127017.8309016.37030HepG2SUPV3L1
FAM198BENSG00000164125.111264.126202196.16530-0.7968020.2908018.96980HepG2TAF15
FAM198BENSG00000164125.113216.734902598.159400.308002.275901.60920HepG2TARDBP
FAM198BENSG00000164125.113024.701401616.122200.904205.340303.89790HepG2TBRG4
FAM198BENSG00000164125.11993.736901635.63040-0.718907.404905.91410HepG2TFIP11
FAM198BENSG00000164125.111947.113702383.02800-0.291503.184002.65370HepG2TIAL1
FAM198BENSG00000164125.11896.174002404.11550-1.4237071.8947069.59030HepG2TRIM56
FAM198BENSG00000164125.111955.093303182.70250-0.703009.058207.51090HepG2UBE2L3
FAM198BENSG00000164125.111512.007601884.75580-0.317904.641603.77560HepG2UPF1
FAM198BENSG00000164125.11870.461302234.68140-1.3602018.4172015.84260HepG2UPF2
FAM198BENSG00000164125.112580.420401937.285900.413507.194605.59100HepG2UTP18
FAM198BENSG00000164125.11943.077601596.39040-0.759404.678303.23890HepG2XPO5
FAM198BENSG00000164125.113177.956702097.905700.599004.466302.85370HepG2XRCC5
FAM198BENSG00000164125.114441.318902346.146500.9206010.050208.16750HepG2XRCC6
FAM198BENSG00000164125.111125.540102402.11220-1.0937019.3077017.46400HepG2XRN2
FAM198BENSG00000164125.111676.158702322.92100-0.4708011.5128010.30200HepG2ZC3H8
FAM198BENSG00000164125.113247.596702072.874400.6476026.0104024.76330HepG2ZNF622
FAM198BENSG00000164125.112861.108902131.473600.424602.704901.42790HepG2ZRANB2
FAM198BENSG00000164125.1195.5758031.334601.608805.610304.06760K562EIF3D
FAM198BENSG00000164125.1147.3133013.545801.804303.714303.03600K562HNRNPC
FAM198BENSG00000164125.1199.9807044.109901.180403.757702.81100K562PUF60
FAM198BENSG00000164125.1186.9419046.900000.890402.563701.53870K562PUM1
FAM198BENSG00000164125.118.0081024.53840-1.615502.116801.37050K562SF3B4
FAM198BENSG00000164125.1154.7429024.184201.178502.544801.86240K562SRSF1
FAM198BENSG00000164125.1147.0489018.749101.327202.711301.90150K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM198B is not available on ENCORE database.





5 RBPs can affect the splicing of FAM198B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM198BENSG00000164125.11chr4-159091617159092751159076762159076977159094019159094202-0.079000.000960.01974excludedHepG2U2AF1
SEFAM198BENSG00000164125.11chr4-159091617159092751159076762159076977159094019159094202-0.096000.003030.03537excludedHepG2U2AF2
SEFAM198BENSG00000164125.11chr4-1590934901590935591590916171590927511590940191590942020.150000.000030.00117includedHepG2SRSF1
MXEFAM198BENSG00000164125.11chr4-1590519371590521641590767621590769771590457551590487661590916171590927510.124000.002060.083071includedHepG2LARP4
MXEFAM198BENSG00000164125.11chr4-1590519371590521641590767621590769771590457551590487661590916171590927510.118000.002350.056671includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM198B is not avaliable on ENCORE database.