CANT1

General Information

Gene Name       : CANT1
Gene ID             : ENSG00000171302.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CANT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CANT1ENSG00000171302.168.6012.5510.57ENCSR000AEF
HepG2CANT1ENSG00000171302.1638.5627.3732.97ENCSR985KAT
K562CANT1ENSG00000171302.1621.1117.3619.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CANT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CANT1 RNA is bound by 19 proteins.  







eCLIP assay for CANT1 is not avaliable on ENCORE database.





19 proteins are bound to CANT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177698800176988059-3'-UTR,intron-Distal4.127633.47885K562LIN28B
chr177698783376987905-3'-UTR,intron-Distal4.5646414.53353K562PABPC4
chr177698949476989544-3'-UTR,intron-Distal,intron-Proximal4.141793.71734HepG2RBM15
chr177698878976988871-3'-UTR,CDS,intron-Distal,intron-Proximal4.122703.52163HepG2IGF2BP1
chr177698829276988323-3'-UTR,intron-Distal4.009087.26220HepG2PCBP2
chr177698948876989549-3'-UTR,intron-Distal,intron-Proximal4.217508.85903K562RBM15
chr177698794676988055-3'-UTR,intron-Distal3.883313.12130HepG2YBX3
chr177698800576988069-3'-UTR,intron-Distal3.736476.03468HepG2LIN28B
chr177698795576988013-3'-UTR,intron-Distal4.666846.51828K562YBX3
chr177698903576989132-3'-UTR,intron-Distal3.321994.26467K562UPF1
chr177698917776989258-3'-UTR,intron-Distal3.620524.93514HepG2UPF1
chr177698947876989549-3'-UTR,intron-Distal,intron-Proximal4.106543.07706HepG2TIAL1
chr177698831176988388-3'-UTR,intron-Distal3.907133.02541K562IGF2BP2
chr177698835176988437-3'-UTR,intron-Distal,intron-Proximal4.421388.85307HepG2PCBP2
chr177698905976989137-3'-UTR,intron-Distal4.399044.68979HepG2UPF1
chr177698832376988351-3'-UTR,intron-Distal4.608816.92189HepG2PCBP2
chr177700138377001460-5'-UTR,intron-Distal,intron-Proximal3.688188.27616HepG2CSTF2T
chr177700574577005862-5'-UTR,intron-Distal,intron-Proximal3.5436723.99753HepG2DDX3X
chr177700574777005828-5'-UTR,intron-Distal,intron-Proximal4.548837.55366K562DDX3X
chr177700137577001495-5'-UTR,intron-Distal,intron-Proximal6.1725451.31608HepG2QKI
chr177700138177001480-5'-UTR,intron-Distal,intron-Proximal5.234196.97910HepG2PCBP2
chr177700149577001588-5'-UTR,intron-Distal,intron-Proximal4.1700214.10920HepG2QKI
chr177698992876989997-CDS,intron-Distal3.010013.26789K562YBX3
chr177699120076991408-CDS,intron-Distal,intron-Proximal4.083184.13881HepG2PRPF4
chr177699109976991245-CDS,intron-Distal,intron-Proximal3.037053.77213K562SND1
chr177700121977001373-intron-Distal,intron-Proximal5.7666617.71641HepG2PCBP2
chr177699993676999997-intron-Distal3.569765.16304HepG2CSTF2T
chr177699997377000097-intron-Distal8.2062240.50672HepG2QKI
chr177699723776997324-intron-Distal4.4728410.15405HepG2CSTF2T
chr177700169777001815-intron-Distal4.319314.48935K562CSTF2T
chr177699896176999021-intron-Distal3.175635.36249HepG2CSTF2T
chr177700288577002927-intron-Distal4.794805.54528HepG2QKI
chr177699996577000069-intron-Distal6.5646722.28433HepG2PCBP2
chr177700229677002351-intron-Distal,intron-Proximal3.678595.56645HepG2CSTF2T
chr177700227177002333-intron-Distal,intron-Proximal3.830323.14687K562CSTF2T
chr177699246676992558-intron-Distal5.230546.29945HepG2XPO5
chr177700226577002343-intron-Distal,intron-Proximal5.9557711.86079HepG2QKI
chr177699999977000150-intron-Distal5.5725820.06458HepG2DDX59
chr177700166477001733-intron-Distal3.756375.80161HepG2CSTF2T
chr177700216977002212-intron-Distal3.432454.69054HepG2CSTF2T
chr177700001377000115-intron-Distal3.529167.12885HepG2HNRNPK
chr177700004077000126-intron-Distal5.887627.47823K562QKI
chr177699782676997880-intron-Distal5.116318.08715HepG2CSTF2T
chr177699945176999491-intron-Distal3.136633.69530HepG2CSTF2T
chr177700160377001630-intron-Distal,intron-Proximal3.721593.16310HepG2CSTF2T
chr177700030677000350-intron-Distal4.999505.50068HepG2DDX59
chr177700009777000183-intron-Distal7.6538323.89718HepG2QKI
chr177699760676997643-intron-Distal3.217133.46580HepG2CSTF2T
chr177699978576999852-intron-Distal5.5716721.33776HepG2QKI
chr177699743976997515-intron-Distal4.130054.48935K562CSTF2T
chr177700028677000383-intron-Distal5.2871216.91521HepG2PCBP2
chr177700554777005647-intron-Distal4.210384.10564HepG2CSTF2T
chr177699797776998028-intron-Distal4.401894.86859HepG2CSTF2T
chr177700018377000277-intron-Distal7.3143220.94958HepG2QKI
chr177699646476996550-intron-Distal3.502545.08364HepG2PRPF4
chr177699944676999510-intron-Distal6.6167324.76363HepG2QKI
chr177700492777005026-intron-Distal4.842386.58841HepG2HNRNPK
chr177699862076998694-intron-Distal3.706414.37279HepG2CSTF2T
chr177699743576997510-intron-Distal4.552966.57216HepG2PRPF4
chr177699979676999861-intron-Distal5.236416.23225K562QKI
chr177699646276996509-intron-Distal4.185064.10564HepG2CSTF2T
chr177700117577001236-intron-Distal3.849593.06084HepG2HNRNPK
chr177700011577000196-intron-Distal5.298659.27360HepG2HNRNPK
chr177700485877004923-intron-Distal4.985446.97910HepG2PCBP2
chr177700028177000401-intron-Distal7.5645524.97107HepG2QKI
chr177700294077002979-intron-Distal4.537524.17759HepG2QKI
chr177700162077001688-intron-Distal,intron-Proximal6.1189717.45140HepG2QKI
chr177700173377001819-intron-Distal3.251046.57490HepG2CSTF2T
chr177699985976999923-intron-Distal3.321843.61733HepG2XPO5
chr177700029177000445-intron-Distal4.5587011.16619HepG2HNRNPK
chr177700168877001823-intron-Distal7.3273745.34672HepG2QKI
chr177699645776996565-intron-Distal3.885196.87013HepG2FAM120A
chr177699979776999871-intron-Distal3.136085.12571HepG2CSTF2T
chr177699725876997285-intron-Distal4.369004.30850HepG2QKI
chr177700007777000164-intron-Distal5.6450614.92930HepG2PCBP2
chr177700124877001333-intron-Distal6.161487.94700HepG2QKI
chr177700504377005124-intron-Distal4.563674.17937HepG2PCBP2
chr177699684376996922-intron-Distal3.090086.57490HepG2CSTF2T
chr177700021877000267-intron-Distal4.185803.31570HepG2HNRNPK
chr177700495177005015-intron-Distal3.381244.74917HepG2PCBP2
chr177700030777000399-intron-Distal4.924097.92947HepG2CSTF2T
chr177699799876998044-intron-Distal4.179414.41148HepG2GTF2F1
chr177699741176997544-intron-Distal4.2852511.49466HepG2CSTF2T
chr177700124577001329-intron-Distal3.099555.12480HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CANT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CANT1 is not available on ENCORE database.

  • 73 RBPs can affect the levels of CANT1.  








The Knockdown/knockout RNA-Seq assay for CANT1 is not available on ENCORE database.





73 RBPs can affect the gene expression of CANT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CANT1ENSG00000171302.12679.26770868.61690-0.354702.274201.36900HepG2ADAR
CANT1ENSG00000171302.121966.392601301.160500.595705.206204.50560HepG2AKAP1
CANT1ENSG00000171302.121314.51030970.883900.437103.884003.18720HepG2BOP1
CANT1ENSG00000171302.12691.88360963.93140-0.478403.319502.48470HepG2CALR
CANT1ENSG00000171302.121183.14610806.877600.552103.037602.23260HepG2CNOT7
CANT1ENSG00000171302.12567.71130891.30320-0.650806.279305.27350HepG2CPSF6
CANT1ENSG00000171302.12569.81460826.26210-0.536103.208001.70690HepG2CSTF2T
CANT1ENSG00000171302.12664.25960871.15530-0.391203.161402.18330HepG2DDX24
CANT1ENSG00000171302.121747.100001246.295200.487204.133703.38190HepG2DDX3X
CANT1ENSG00000171302.121416.844901060.405200.418002.292001.58230HepG2DDX55
CANT1ENSG00000171302.12514.255301012.14720-0.976906.597005.12040HepG2DDX59
CANT1ENSG00000171302.121420.695201070.871500.407702.672702.06530HepG2DDX6
CANT1ENSG00000171302.12700.14470874.67570-0.321102.266101.62470HepG2DNAJC21
CANT1ENSG00000171302.121228.11700983.013900.321102.656201.51360HepG2EIF2S2
CANT1ENSG00000171302.121013.794201452.55780-0.518808.096506.80550HepG2EIF4G1
CANT1ENSG00000171302.121092.824101391.42110-0.348502.104201.38750HepG2EIF4G2
CANT1ENSG00000171302.12880.064801122.51860-0.351102.452601.42260HepG2ESF1
CANT1ENSG00000171302.12945.231601181.95860-0.322402.591101.78360HepG2EWSR1
CANT1ENSG00000171302.122082.348401308.437000.670307.084905.91310HepG2FIP1L1
CANT1ENSG00000171302.121634.191201147.821400.509604.601503.72590HepG2FXR1
CANT1ENSG00000171302.12945.547001154.83070-0.288503.058302.03660HepG2HDGF
CANT1ENSG00000171302.121022.534001239.96790-0.278202.916002.18080HepG2HNRNPF
CANT1ENSG00000171302.12484.94760964.15670-0.9914012.6956011.47680HepG2HNRNPLL
CANT1ENSG00000171302.121018.125001221.01140-0.262202.068201.43590HepG2IGF2BP1
CANT1ENSG00000171302.122253.916701585.894500.507003.779402.80540HepG2LARP4
CANT1ENSG00000171302.121446.366001154.584700.325001.857501.33530HepG2MATR3
CANT1ENSG00000171302.121352.457101059.032800.352703.111802.25600HepG2MSI2
CANT1ENSG00000171302.121763.442601459.782700.272502.889002.10960HepG2NOL12
CANT1ENSG00000171302.12608.93700854.95130-0.489503.840502.96160HepG2NSUN2
CANT1ENSG00000171302.12478.53610939.98650-0.974004.307403.02930HepG2PCBP2
CANT1ENSG00000171302.12733.32910973.51820-0.408704.661303.68470HepG2PRPF4
CANT1ENSG00000171302.121152.048701393.55540-0.274601.828601.33060HepG2PUF60
CANT1ENSG00000171302.121984.462901479.396700.4236010.088909.10490HepG2PUM1
CANT1ENSG00000171302.12620.100901221.44490-0.9780019.6064018.15600HepG2QKI
CANT1ENSG00000171302.121877.184701560.915800.266102.904402.37680HepG2RBM22
CANT1ENSG00000171302.121444.744701255.177700.202801.777401.32330HepG2NELFE
CANT1ENSG00000171302.121051.077601335.79310-0.345802.697502.02100HepG2RPLP0
CANT1ENSG00000171302.121158.85020915.607400.339802.043201.34900HepG2RPS2
CANT1ENSG00000171302.12459.87270808.85300-0.814607.888906.64420HepG2RRP9
CANT1ENSG00000171302.121480.655201145.135400.370602.041501.46100HepG2SF3A3
CANT1ENSG00000171302.121059.458901376.02420-0.377204.574303.80400HepG2SRSF5
CANT1ENSG00000171302.12993.728901218.23760-0.293903.205902.46280HepG2SRSF7
CANT1ENSG00000171302.121156.729601530.65360-0.404106.326705.60890HepG2SSB
CANT1ENSG00000171302.121765.711901564.840500.174101.854901.32690HepG2SUCLG1
CANT1ENSG00000171302.121121.16220883.579000.343502.947101.97870HepG2SUPT6H
CANT1ENSG00000171302.12547.662101055.52760-0.9466011.3635010.14840HepG2SUPV3L1
CANT1ENSG00000171302.12709.332501101.69630-0.635209.202608.27560HepG2TAF15
CANT1ENSG00000171302.12484.85290707.42870-0.545003.740402.60000HepG2TFIP11
CANT1ENSG00000171302.12650.332701015.56080-0.6430011.214109.98070HepG2UPF1
CANT1ENSG00000171302.121214.59100980.482900.308803.562802.89900HepG2UTP3
CANT1ENSG00000171302.12409.05690960.73430-1.2318034.0237032.17970HepG2ZC3H8
CANT1ENSG00000171302.121517.528001116.921400.442108.569807.74320HepG2ZNF622
CANT1ENSG00000171302.122390.421901179.134301.0194020.4184018.99610K562AQR
CANT1ENSG00000171302.121222.06760985.741800.309902.908601.77110K562CPEB4
CANT1ENSG00000171302.12819.30110649.322900.335402.482201.49860K562DDX3X
CANT1ENSG00000171302.12795.372301020.00140-0.358903.630302.89670K562DDX47
CANT1ENSG00000171302.12854.89030638.027700.422002.917701.98160K562EFTUD2
CANT1ENSG00000171302.121452.25420943.466100.6222011.087409.79220K562EIF2S2
CANT1ENSG00000171302.12377.68240519.40590-0.459702.603401.51660K562FKBP4
CANT1ENSG00000171302.12675.98270528.957700.353702.045301.30610K562FMR1
CANT1ENSG00000171302.121076.03890705.483600.608909.047008.02560K562FXR1
CANT1ENSG00000171302.12230.60530334.44760-0.536402.440301.78280K562G3BP2
CANT1ENSG00000171302.12651.17110496.334200.391602.558701.79350K562GPKOW
CANT1ENSG00000171302.12819.881701090.63280-0.411702.734901.84660K562HNRNPU
CANT1ENSG00000171302.12876.13840629.220600.477502.983501.90610K562IGF2BP2
CANT1ENSG00000171302.12856.57630661.100500.373602.940602.07410K562MAGOH
CANT1ENSG00000171302.12659.12020484.479600.444003.217202.26970K562METAP2
CANT1ENSG00000171302.12432.31380588.18190-0.444202.895001.89490K562PCBP2
CANT1ENSG00000171302.121041.14470620.875800.745708.049606.76450K562PRPF8
CANT1ENSG00000171302.12861.27660642.314400.423103.793303.02760K562PTBP1
CANT1ENSG00000171302.121737.747101458.590700.252502.104301.39210K562PUF60
CANT1ENSG00000171302.12824.33280615.801400.420703.221902.30900K562RBM22
CANT1ENSG00000171302.12460.99040347.515900.407602.622201.79140K562SF3B4
CANT1ENSG00000171302.12775.60420629.703100.300501.963301.35490K562SRSF1
CANT1ENSG00000171302.12608.25090437.033600.476803.319702.15260K562SRSF4
CANT1ENSG00000171302.12877.99280637.255700.462203.573902.76600K562TARDBP
CANT1ENSG00000171302.12787.03830614.716900.356402.679001.87520K562TIA1
CANT1ENSG00000171302.121290.741601095.837900.236102.212701.56560K562UPF1
CANT1ENSG00000171302.12702.11070937.67210-0.417403.652302.64730K562WDR3
CANT1ENSG00000171302.12785.51740975.08250-0.311903.303602.38700K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CANT1 is not available on ENCORE database.





21 RBPs can affect the splicing of CANT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.171000.000190.06772excludedK562IGF2BP2
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.471000.000120.03811excludedHepG2ILF3
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.292000.000050.05151excludedHepG2TROVE2
SECANT1ENSG00000171302.12chr17-7699618176996352769939217699404577005745770058460.294000.000000.00000includedK562AQR
SECANT1ENSG00000171302.12chr17-769942297699436876993921769940457699618176996352-0.671000.000570.00759excludedK562AQR
SECANT1ENSG00000171302.12chr17-7699618176996352769939217699404577005745770058750.314000.000000.00000includedK562FXR1
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005846-0.121000.000270.02662excludedHepG2DDX3X
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.133000.000040.00501excludedHepG2NCBP2
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.138000.000010.00067excludedHepG2PTBP1
SECANT1ENSG00000171302.12chr17-769942297699436876993921769940457700574577005860-0.095000.000750.06136excludedHepG2DDX6
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.586000.000040.01248excludedHepG2HNRNPUL1
SECANT1ENSG00000171302.12chr17-7700145377001563769939217699404577005745770058750.077000.005710.09732includedHepG2SRSF1
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.136000.000340.01047excludedHepG2SRSF1
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.502000.000420.05105excludedHepG2RBFOX2
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.220000.000140.06022excludedHepG2BCCIP
SECANT1ENSG00000171302.12chr17-7699618176996352769939217699404577005745770058750.404000.000000.00123includedHepG2FUBP3
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.203000.000380.02043excludedHepG2HNRNPU
SECANT1ENSG00000171302.12chr17-769961817699635276993921769940457700574577005875-0.165000.000510.02374excludedK562PTBP1
RICANT1ENSG00000171302.12chr17-769930737699404576993073769937267699392176994045-0.292000.000130.01339excludedHepG2SFPQ
RICANT1ENSG00000171302.12chr17-7699307376994045769930737699372676993921769940450.223000.000420.00670includedHepG2SF3A3
RICANT1ENSG00000171302.12chr17-769930737699404576993073769937267699392176994045-0.496000.000000.00000excludedHepG2U2AF2
RICANT1ENSG00000171302.12chr17-7699307376994045769930737699372676993921769940450.200000.000730.06926includedHepG2DDX55
RICANT1ENSG00000171302.12chr17-7699307376994045769930737699372676993921769940450.287000.001540.08931includedK562XRN2
RICANT1ENSG00000171302.12chr17-7699307376994045769930737699372676993921769940450.255000.000560.00673includedK562AKAP8L
MXECANT1ENSG00000171302.12chr17-76996181769963527700145377001563769939217699404577005745770058750.863000.000110.003771includedHepG2SRSF1
MXECANT1ENSG00000171302.12chr17-76994229769943687699618176996352769939217699404577001453770015630.556000.014320.084331includedK562AQR
MXECANT1ENSG00000171302.12chr17-7699618176996352770014537700156376993921769940457700574577005875-0.383000.001540.013232includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CANT1 is not avaliable on ENCORE database.