PBRM1

General Information

Gene Name       : PBRM1
Gene ID             : ENSG00000163939.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PBRM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PBRM1ENSG00000163939.1831.5829.0130.30ENCSR000AEF
HepG2PBRM1ENSG00000163939.1812.8818.9015.89ENCSR985KAT
K562PBRM1ENSG00000163939.1815.0415.7815.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PBRM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PBRM1 RNA is bound by 21 proteins.  







eCLIP assay for PBRM1 is not avaliable on ENCORE database.





21 proteins are bound to PBRM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr35257942752579483-3'-UTR,intron-Distal4.551283.35973HepG2FUBP3
chr35261315652613216-3'-UTR,CDS,intron-Distal,intron-Proximal3.143345.99957HepG2BCLAF1
chr35262320352623270-3'-UTR,CDS,intron-Distal,intron-Proximal3.769647.25346K562UCHL5
chr35257953252579583-3'-UTR,intron-Distal5.851516.06289K562PUM2
chr35271367852713741-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.530315.10069HepG2GRWD1
chr35258875552588921-3'-UTR,CDS,intron-Distal,intron-Proximal3.314325.88643HepG2RBFOX2
chr35259730752597469-3'-UTR,CDS,intron-Distal,intron-Proximal3.091704.70577HepG2G3BP1
chr35262308552623181-3'-UTR,CDS,intron-Distal,intron-Proximal5.012847.49801K562ZNF622
chr35271365852713744-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.031787.60977HepG2PPIG
chr35262320952623273-3'-UTR,CDS,intron-Distal,intron-Proximal6.1316116.28863HepG2BCLAF1
chr35257951352579554-3'-UTR,intron-Distal4.245803.32080HepG2FUBP3
chr35262320252623272-3'-UTR,CDS,intron-Distal,intron-Proximal3.975845.14848K562ZNF622
chr35262132652621400-3'-UTR,CDS,intron-Distal,intron-Proximal5.072514.35676HepG2PRPF8
chr35271368252713734-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.020195.27152HepG2BCLAF1
chr35262313652623162-3'-UTR,CDS,intron-Distal4.422594.37348HepG2BCLAF1
chr35259730552597372-3'-UTR,CDS,intron-Distal,intron-Proximal3.432123.09866HepG2FXR2
chr35262319352623270-3'-UTR,CDS,intron-Distal,intron-Proximal4.677346.50203HepG2GRWD1
chr35262044052620453-3'-UTR,CDS,intron-Distal,intron-Proximal3.810054.93978HepG2BCLAF1
chr35271583152715910-3'-UTR,intron-Distal,intron-Proximal3.486983.30286HepG2PTBP1
chr35271984252719922-5'-UTR,intron-Distal,intron-Proximal3.280926.04855HepG2PRPF4
chr35271984852719911-5'-UTR,intron-Distal,intron-Proximal3.955496.30673HepG2DDX3X
chr35271984552719921-5'-UTR,intron-Distal,intron-Proximal3.370414.83318HepG2GTF2F1
chr35265129652651382-CDS,intron-Distal3.424064.88141HepG2GRWD1
chr35270251152702553-CDS,intron-Distal,intron-Proximal5.385597.95223HepG2BCLAF1
chr35271362252713669-CDS,intron-Distal,intron-Proximal3.276506.19339HepG2BCLAF1
chr35263762352637695-CDS,intron-Distal3.980303.79347HepG2GRWD1
chr35265133852651421-CDS,intron-Distal5.6968111.63584HepG2BCLAF1
chr35269228652692331-CDS,intron-Distal3.076435.21025HepG2PPIG
chr35269614652696218-CDS,intron-Distal,intron-Proximal3.271415.04943K562ZNF622
chr35267728852677361-CDS,intron-Distal,intron-Proximal3.882006.08299HepG2PPIG
chr35267872152678770-CDS,intron-Distal3.261624.61799HepG2BCLAF1
chr35263753652637581-CDS,intron-Distal,intron-Proximal5.337628.40988HepG2BCLAF1
chr35266871152668758-CDS,intron-Distal3.260374.79538HepG2BCLAF1
chr35267597052675994-CDS,intron-Distal3.477445.45876HepG2BCLAF1
chr35268575752685808-CDS,intron-Distal,intron-Proximal3.842129.50935HepG2BCLAF1
chr35268233052682399-CDS,intron-Distal,intron-Proximal5.013023.70131HepG2PRPF8
chr35269614952696251-CDS,intron-Distal,intron-Proximal3.8006212.60692HepG2BCLAF1
chr35265144552651512-CDS,intron-Distal3.8432410.35753HepG2BCLAF1
chr35264362952643713-CDS,intron-Distal5.235286.43721K562PUM2
chr35268580852685824-CDS,intron-Distal3.259394.26492HepG2BCLAF1
chr35266291452662941-CDS,intron-Distal3.848814.51739HepG2BCLAF1
chr35271360352713705-CDS,intron-Distal,intron-Proximal3.219594.08171K562YBX3
chr35271358952713622-CDS,intron-Distal,intron-Proximal3.657635.56491HepG2BCLAF1
chr35264942252649467-CDS,intron-Distal,intron-Proximal3.653765.97823HepG2BCLAF1
chr35265122752651318-CDS,intron-Distal,intron-Proximal3.718727.77750HepG2PRPF8
chr35266862352668646-CDS,intron-Distal3.580343.87469HepG2BCLAF1
chr35264386752643928-CDS,intron-Distal4.215077.49468HepG2BCLAF1
chr35266129452661360-CDS,intron-Distal3.452036.74947HepG2BCLAF1
chr35269625152696290-CDS,intron-Distal5.300627.95223HepG2BCLAF1
chr35264415652644210-intron-Distal4.247893.35169HepG2U2AF2
chr35271966452719722-intron-Distal,intron-Proximal4.334435.22198HepG2EFTUD2
chr35262300452623086-intron-Distal,intron-Proximal4.116076.01372K562AQR
chr35271877052718842-intron-Distal,intron-Proximal3.906333.14687K562CSTF2T
chr35259269452592774-intron-Distal3.245033.35103HepG2QKI
chr35262298852623077-intron-Distal,intron-Proximal4.160703.49003K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PBRM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PBRM1 is not available on ENCORE database.

  • 105 RBPs can affect the levels of PBRM1.  








The Knockdown/knockout RNA-Seq assay for PBRM1 is not available on ENCORE database.





105 RBPs can affect the gene expression of PBRM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PBRM1ENSG00000163939.14967.925401329.54340-0.458005.310304.28100HepG2AKAP8L
PBRM1ENSG00000163939.14848.445701168.03490-0.461202.847302.05260HepG2ASCC1
PBRM1ENSG00000163939.14676.673901191.19510-0.815905.675104.31430HepG2BCCIP
PBRM1ENSG00000163939.141231.740401836.54140-0.576307.028206.12450HepG2BOP1
PBRM1ENSG00000163939.141526.662702002.18730-0.391202.365401.47120HepG2CCAR1
PBRM1ENSG00000163939.14572.436401323.06780-1.2087031.7100030.01240HepG2CKAP4
PBRM1ENSG00000163939.14465.75030760.55590-0.707504.138603.19570HepG2CNOT7
PBRM1ENSG00000163939.142036.055101686.042800.272001.934001.34830HepG2CPSF6
PBRM1ENSG00000163939.14974.254901316.57580-0.434403.926602.61710HepG2CPSF7
PBRM1ENSG00000163939.14873.725601366.72130-0.6455011.9479010.79150HepG2CELF1
PBRM1ENSG00000163939.14837.863901095.52810-0.386804.002302.62920HepG2DDX1
PBRM1ENSG00000163939.141273.491701014.294400.328202.703201.80190HepG2DDX24
PBRM1ENSG00000163939.14765.015001352.32210-0.821906.184905.28480HepG2DDX3X
PBRM1ENSG00000163939.14634.431501161.40130-0.872307.261206.30140HepG2DDX6
PBRM1ENSG00000163939.14814.919301036.09260-0.346402.586001.63660HepG2DHX30
PBRM1ENSG00000163939.14728.592001074.22180-0.560107.788706.65710HepG2DNAJC21
PBRM1ENSG00000163939.14433.424701064.76400-1.2967042.4531040.16860HepG2DNAJC2
PBRM1ENSG00000163939.14811.563701116.75260-0.460502.587802.01400HepG2EIF2S1
PBRM1ENSG00000163939.141514.956001941.80720-0.358105.169804.39410HepG2ETF1
PBRM1ENSG00000163939.14968.287801293.13940-0.417404.038703.03010HepG2EWSR1
PBRM1ENSG00000163939.14527.51350815.55690-0.628607.357005.43400HepG2FAM120A
PBRM1ENSG00000163939.14763.43730987.85810-0.371802.952101.77480HepG2FASTKD2
PBRM1ENSG00000163939.14887.322901390.21720-0.647804.746603.30910HepG2FUS
PBRM1ENSG00000163939.14503.057301155.06770-1.1992010.945009.66470HepG2G3BP1
PBRM1ENSG00000163939.141555.389501225.981600.343202.465501.62660HepG2G3BP2
PBRM1ENSG00000163939.141074.605801263.36630-0.233502.232701.34850HepG2HDGF
PBRM1ENSG00000163939.14437.54610642.65820-0.554603.096301.64960HepG2HNRNPA0
PBRM1ENSG00000163939.14761.660401084.51340-0.509804.972804.13950HepG2HNRNPA1
PBRM1ENSG00000163939.141200.938801512.73380-0.333004.221003.35570HepG2HNRNPF
PBRM1ENSG00000163939.141082.140301338.84630-0.307104.374603.54120HepG2HNRNPL
PBRM1ENSG00000163939.14796.524201198.35370-0.5893010.410809.29700HepG2HNRNPU
PBRM1ENSG00000163939.141149.131901489.60980-0.374403.896303.04850HepG2IGF2BP1
PBRM1ENSG00000163939.141069.836801224.07710-0.194301.970001.33880HepG2ILF2
PBRM1ENSG00000163939.14849.905501209.66300-0.509209.146107.38810HepG2KIF1C
PBRM1ENSG00000163939.14875.550201281.95610-0.550103.630602.90850HepG2NCBP2
PBRM1ENSG00000163939.14874.618301316.04860-0.589503.807602.59630HepG2PCBP2
PBRM1ENSG00000163939.141043.822901296.46900-0.312703.564202.69610HepG2PRPF4
PBRM1ENSG00000163939.14581.09060903.81010-0.637303.680202.76410HepG2PRPF8
PBRM1ENSG00000163939.141285.855001476.69960-0.199602.328401.77530HepG2PUM1
PBRM1ENSG00000163939.141016.387701347.77490-0.407105.029004.24290HepG2PUS1
PBRM1ENSG00000163939.14867.505001270.03040-0.549902.661201.96950HepG2RAVER1
PBRM1ENSG00000163939.141268.990201750.04770-0.463705.991904.78930HepG2RBM15
PBRM1ENSG00000163939.142681.798801622.993700.7244018.4795017.38060HepG2RBM22
PBRM1ENSG00000163939.141511.139601101.844400.455605.058704.17280HepG2RBM25
PBRM1ENSG00000163939.141529.404101247.575900.293703.297402.71750HepG2NELFE
PBRM1ENSG00000163939.141604.823001161.993700.465707.699706.74870HepG2RECQL
PBRM1ENSG00000163939.141272.209501629.60200-0.357203.236702.50670HepG2RPLP0
PBRM1ENSG00000163939.14865.980401223.71470-0.498902.325701.34610HepG2RPS5
PBRM1ENSG00000163939.14849.033601067.18150-0.329903.792903.05940HepG2SAFB2
PBRM1ENSG00000163939.141425.825201244.504700.196102.063301.49520HepG2SMN1
PBRM1ENSG00000163939.14922.747901294.88030-0.488803.063502.05210HepG2SMNDC1
PBRM1ENSG00000163939.141302.837102008.76150-0.624604.246603.27180HepG2SNRNP70
PBRM1ENSG00000163939.142084.870101833.115600.185602.106901.65100HepG2SRFBP1
PBRM1ENSG00000163939.141921.146101218.205900.6571015.9794015.04220HepG2SRSF1
PBRM1ENSG00000163939.141145.524601486.21490-0.375605.181804.27680HepG2SRSF7
PBRM1ENSG00000163939.141808.668201591.585300.184401.860101.41830HepG2SSB
PBRM1ENSG00000163939.14472.59700663.79790-0.490102.797701.68950HepG2STIP1
PBRM1ENSG00000163939.14784.445701165.94470-0.571803.282502.55300HepG2SUPV3L1
PBRM1ENSG00000163939.141233.913501777.79930-0.526905.710404.72430HepG2TARDBP
PBRM1ENSG00000163939.14935.010801164.38970-0.316502.684702.19050HepG2TIAL1
PBRM1ENSG00000163939.14763.717501174.83590-0.6213011.3724010.34460HepG2TRIM56
PBRM1ENSG00000163939.141908.158201380.829800.466504.620403.81870HepG2U2AF1
PBRM1ENSG00000163939.14298.12990688.83570-1.208209.744608.32130HepG2UCHL5
PBRM1ENSG00000163939.14675.897701067.94230-0.660003.682802.50970HepG2UPF2
PBRM1ENSG00000163939.141451.366001708.21450-0.235102.373901.39290HepG2UTP18
PBRM1ENSG00000163939.141025.369501604.51480-0.6460014.0950012.90270HepG2UTP3
PBRM1ENSG00000163939.14718.080501147.74140-0.676604.406103.49760HepG2XRN2
PBRM1ENSG00000163939.141612.535901827.78990-0.180802.100801.60560HepG2ZNF622
PBRM1ENSG00000163939.141015.505101591.91630-0.6486013.8012012.63680K562AGGF1
PBRM1ENSG00000163939.141374.739801749.13520-0.347503.199802.12670K562AKAP8
PBRM1ENSG00000163939.14934.073401656.42660-0.8265013.6417012.02320K562AKAP8L
PBRM1ENSG00000163939.141085.156101720.38950-0.664808.570407.62980K562AQR
PBRM1ENSG00000163939.141305.141501737.92500-0.413205.748604.37420K562ATP5C1
PBRM1ENSG00000163939.14956.748801151.48760-0.267302.667701.72480K562BCLAF1
PBRM1ENSG00000163939.141525.971401902.53930-0.318203.371502.05390K562CCDC124
PBRM1ENSG00000163939.141627.247702077.03730-0.352104.764403.28450K562CPEB4
PBRM1ENSG00000163939.14552.68900896.54070-0.697908.767406.80220K562DDX3X
PBRM1ENSG00000163939.142695.063002149.530600.326205.014504.17330K562DDX47
PBRM1ENSG00000163939.141422.294401782.64990-0.325804.148203.04550K562DKC1
PBRM1ENSG00000163939.141433.895901081.353200.407002.763501.72880K562EIF3D
PBRM1ENSG00000163939.142779.448002432.067900.192502.391101.51410K562EIF4G2
PBRM1ENSG00000163939.141220.694701764.46370-0.531506.022404.73710K562FIP1L1
PBRM1ENSG00000163939.141208.77700974.085300.311303.081802.44810K562FXR1
PBRM1ENSG00000163939.14822.935101141.14680-0.471604.659902.76440K562G3BP1
PBRM1ENSG00000163939.141193.478202136.34460-0.8400015.6839013.85170K562GRSF1
PBRM1ENSG00000163939.141609.527601942.50720-0.271302.244801.30290K562HNRNPL
PBRM1ENSG00000163939.14956.172801451.26900-0.602005.599704.21190K562HNRNPM
PBRM1ENSG00000163939.141782.999602392.27680-0.424104.273203.28980K562HSPD1
PBRM1ENSG00000163939.14914.682901193.36420-0.383702.284201.37630K562IGF2BP2
PBRM1ENSG00000163939.141382.274301758.00340-0.346903.855402.85840K562KIF1C
PBRM1ENSG00000163939.14754.133201118.89120-0.569203.871802.75360K562KRR1
PBRM1ENSG00000163939.141004.649301254.43320-0.320302.562701.75330K562MAGOH
PBRM1ENSG00000163939.141185.249901682.74380-0.505605.671303.94170K562MAK16
PBRM1ENSG00000163939.141592.577701969.39100-0.306402.843201.91860K562MBNL1
PBRM1ENSG00000163939.141024.133901278.99100-0.320602.499901.67120K562METAP2
PBRM1ENSG00000163939.14952.350001380.38990-0.535503.793602.71760K562NAA15
PBRM1ENSG00000163939.14980.484901226.08480-0.322502.773601.42320K562PCBP1
PBRM1ENSG00000163939.14883.271701116.18140-0.337602.539901.60370K562PCBP2
PBRM1ENSG00000163939.141095.038901522.71660-0.475703.981702.98360K562PCBP3
PBRM1ENSG00000163939.14975.116401291.60300-0.405502.973601.35700K562PKM
PBRM1ENSG00000163939.14827.722301167.96500-0.496805.690804.54410K562POLR2G
PBRM1ENSG00000163939.141101.937002002.97550-0.8621014.1353011.82740K562PPIG
PBRM1ENSG00000163939.14609.92320921.44460-0.595303.316202.31300K562PSIP1
PBRM1ENSG00000163939.14913.741901218.74140-0.415504.198303.39680K562PTBP1
PBRM1ENSG00000163939.142294.653102765.55340-0.269302.786601.82450K562PUM2
PBRM1ENSG00000163939.14833.781601642.96740-0.9786016.4831015.19700K562PUS1
PBRM1ENSG00000163939.141004.994001600.61970-0.6714012.3107011.06410K562RBM15
PBRM1ENSG00000163939.14854.286501128.27540-0.401303.195602.05150K562SRSF5
PBRM1ENSG00000163939.14710.55960951.58510-0.421402.639101.64730K562SUPV3L1
PBRM1ENSG00000163939.141395.763801171.513900.252602.016601.31550K562SYNCRIP
PBRM1ENSG00000163939.14778.422501209.22080-0.635506.859005.69840K562TARDBP
PBRM1ENSG00000163939.14861.487001166.41380-0.437204.362303.29860K562TIA1
PBRM1ENSG00000163939.14850.591301144.45320-0.428103.628002.34570K562TRA2A
PBRM1ENSG00000163939.141488.917201800.27190-0.274003.613402.80010K562UPF1
PBRM1ENSG00000163939.141090.792801665.54810-0.610603.255501.81570K562UTP18
PBRM1ENSG00000163939.141962.847901601.844100.293104.320303.27950K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PBRM1 is not available on ENCORE database.





10 RBPs can affect the splicing of PBRM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPBRM1ENSG00000163939.14chr3-525922645259242952588739525888955259578252595984-0.532000.000000.00006excludedHepG2U2AF2
SEPBRM1ENSG00000163939.14chr3-5265891252658957526512775265155452661288526613860.160000.000070.02266includedK562APOBEC3C
SEPBRM1ENSG00000163939.14chr3-525922645259242952588739525888955259578252595984-0.399000.000310.04181excludedHepG2PCBP2
SEPBRM1ENSG00000163939.14chr3-525887395258889552584762525848335259578252595984-0.374000.000260.01235excludedK562UTP18
SEPBRM1ENSG00000163939.14chr3-525887395258889552584762525848335259578252595984-0.299000.001620.03936excludedK562RBM15
SEPBRM1ENSG00000163939.14chr3-5258873952588895525847625258483352595782525959840.241000.005730.07733includedK562HNRNPC
A3SSPBRM1ENSG00000163939.14chr3-5259578252596001525957825259598452597298525975090.169000.000000.00003longerK562AQR
A3SSPBRM1ENSG00000163939.14chr3-5266128852661435526612885266138652662909526630510.087000.004190.02474longerK562AQR
A3SSPBRM1ENSG00000163939.14chr3-5271251552712642527125155271261352713589527137290.116000.001740.01140longerK562AQR
A3SSPBRM1ENSG00000163939.14chr3-5269221452692358526922145269233152696148526962920.304000.006480.03625longerK562AQR
MXEPBRM1ENSG00000163939.14chr3-5270242952702661527125155271261352696148526962925271358952713730-0.122000.002830.022302includedK562AQR
MXEPBRM1ENSG00000163939.14chr3-5258873952588895525922645259242952584762525848335259578252595984-0.325000.000050.001332includedHepG2SFPQ
MXEPBRM1ENSG00000163939.14chr3-5258873952588895525922645259242952584762525848335259578252595984-0.547000.000000.000002includedHepG2U2AF2
MXEPBRM1ENSG00000163939.14chr3-52588739525888955259226452592429525847625258483352595782525959840.249000.001170.065751includedHepG2TBRG4
MXEPBRM1ENSG00000163939.14chr3-5258873952588895525922645259242952584762525848335259578252595984-0.414000.005810.070522includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PBRM1 is not avaliable on ENCORE database.