C20orf96

General Information

Gene Name       : C20orf96
Gene ID             : ENSG00000196476.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C20orf96)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878C20orf96ENSG00000196476.113.465.424.44ENCSR000AEF
HepG2C20orf96ENSG00000196476.1116.1714.5615.37ENCSR985KAT
K562C20orf96ENSG00000196476.117.075.626.35ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C20orf96 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C20orf96 RNA is bound by 18 proteins.  







eCLIP assay for C20orf96 is not avaliable on ENCORE database.





18 proteins are bound to C20orf96 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr20251545251605-3'-UTR,intron-Distal4.071167.65598K562U2AF2
chr20251627251685-3'-UTR,intron-Distal6.4995583.30979HepG2PCBP2
chr20257330257409-3'-UTR,CDS,intron-Distal,intron-Proximal3.589504.16915HepG2HLTF
chr20251611251627-3'-UTR,intron-Distal6.5272862.45622HepG2PCBP2
chr20257387257434-3'-UTR,CDS,intron-Distal,intron-Proximal3.3891211.94608HepG2PRPF8
chr20251549251651-3'-UTR,intron-Distal4.7890914.61015K562PTBP1
chr20251612251727-3'-UTR,intron-Distal3.282346.07733HepG2HNRNPK
chr20251551251608-3'-UTR,intron-Distal3.711884.92572HepG2ILF3
chr20251544251611-3'-UTR,intron-Distal5.1968230.23274HepG2PCBP2
chr20251566251687-3'-UTR,intron-Distal4.1463119.26743K562PCBP1
chr20251541251610-3'-UTR,intron-Distal7.1571041.12721K562ILF3
chr20251559251745-3'-UTR,intron-Distal4.6600713.22172HepG2PCBP1
chr20251610251675-3'-UTR,intron-Distal5.4907625.63018K562ILF3
chr20251549251668-3'-UTR,intron-Distal4.9774930.13004HepG2PTBP1
chr20257391257435-3'-UTR,CDS,intron-Distal,intron-Proximal4.021536.78984HepG2AQR
chr20257341257452-3'-UTR,CDS,intron-Distal,intron-Proximal4.1302515.35566K562RBFOX2
chr20251539251612-3'-UTR,intron-Distal3.1772112.73613HepG2U2AF2
chr20271018271034-5'-UTR,intron-Distal,intron-Proximal3.053363.84771K562ZNF622
chr20258974259008-CDS,intron-Distal3.705876.98305HepG2PPIG
chr20251880251883-CDS,intron-Distal3.202323.12941K562UCHL5
chr20257995258023-CDS,intron-Distal3.192203.01994K562BUD13
chr20257454257521-CDS,intron-Distal,intron-Proximal3.228617.95770HepG2GRWD1
chr20257486257527-CDS,intron-Distal,intron-Proximal3.725966.50179HepG2BUD13
chr20257686257701-CDS,intron-Distal3.660686.70085HepG2PPIG
chr20258973259039-CDS,intron-Distal6.1052514.83636K562ZNF622
chr20257715257785-CDS,intron-Distal,intron-Proximal3.1335911.72944K562ZNF622
chr20251897251907-CDS,intron-Distal3.236685.30095HepG2PPIG
chr20257701257764-CDS,intron-Distal3.525448.77723HepG2PPIG
chr20257958258023-CDS,intron-Distal5.6537112.14762K562UCHL5
chr20257879257914-CDS,intron-Distal,intron-Proximal3.568109.05563HepG2PPIG
chr20257959258022-CDS,intron-Distal4.9487710.91880K562ZNF622
chr20256693256776-CDS,intron-Distal,intron-Proximal3.470287.36622HepG2U2AF2
chr20257880257941-CDS,intron-Distal,intron-Proximal3.850445.74135K562DDX24
chr20258971258978-CDS,intron-Distal3.620824.76274K562UCHL5
chr20257481257513-CDS,intron-Distal3.646147.05173K562ZNF622
chr20257638257695-CDS,intron-Distal,intron-Proximal4.087385.34978HepG2PRPF8
chr20259935259965-CDS,intron-Distal3.176095.74131HepG2PPIG
chr20251888251972-CDS,intron-Distal3.550935.28154K562SF3B4
chr20257483257518-CDS,intron-Distal3.936957.55042HepG2PPIG
chr20270866270920-CDS,intron-Distal,intron-Proximal5.334297.02967HepG2PRPF8
chr20259947260030-CDS,intron-Distal,intron-Proximal3.221024.14131HepG2DDX59
chr20257721257774-CDS,intron-Distal,intron-Proximal3.943969.17402K562UCHL5
chr20257872257913-CDS,intron-Distal,intron-Proximal3.683656.23335HepG2GRWD1
chr20257879257917-CDS,intron-Distal,intron-Proximal3.019055.10726K562UCHL5
chr20256609256631-CDS,intron-Distal4.150786.64430HepG2PPIG
chr20256971257047-intron-Distal3.027367.55777K562RBFOX2
chr20255941256050-intron-Distal3.822325.07626HepG2PTBP1
chr20259446259589-intron-Distal4.883676.17200HepG2PCBP2
chr20259080259179-intron-Distal,intron-Proximal4.164695.47084HepG2DDX59
chr20256831256886-intron-Distal4.092738.22023K562RBFOX2
chr20257526257585-intron-Distal,intron-Proximal4.544294.28193HepG2AQR
chr20255965256051-intron-Distal5.422538.88784K562PTBP1
chr20256841256904-intron-Distal4.6230417.55435HepG2RBFOX2
chr20267124267233-intron-Distal4.046304.78196HepG2PTBP1
chr20254482254542-intron-Distal4.428283.91475K562PTBP1
chr20256736256773-intron-Distal,intron-Proximal3.478663.39008HepG2AQR
chr20256893256986-intron-Distal4.912687.08021K562HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C20orf96 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C20orf96 is not available on ENCORE database.

  • 55 RBPs can affect the levels of C20orf96.  








The Knockdown/knockout RNA-Seq assay for C20orf96 is not available on ENCORE database.





55 RBPs can affect the gene expression of C20orf96 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C20orf96ENSG00000196476.7208.00370343.45960-0.723506.314205.47210HepG2ACO1
C20orf96ENSG00000196476.7243.45120334.03380-0.456402.148801.61640HepG2BOP1
C20orf96ENSG00000196476.7613.46170436.700500.490202.550201.61980HepG2CCAR1
C20orf96ENSG00000196476.7374.06090253.980400.558502.923602.12940HepG2CIRBP
C20orf96ENSG00000196476.7455.98150306.669400.572203.711502.92750HepG2CPSF6
C20orf96ENSG00000196476.7398.18220526.09010-0.401902.785202.14110HepG2CELF1
C20orf96ENSG00000196476.7230.25360348.24290-0.596902.161301.30120HepG2DDX59
C20orf96ENSG00000196476.7443.37400282.330100.651003.340402.63920HepG2EIF4A3
C20orf96ENSG00000196476.7716.06480578.705100.307202.212801.66500HepG2ETF1
C20orf96ENSG00000196476.7327.09240230.206900.506702.477201.73330HepG2FUBP3
C20orf96ENSG00000196476.7438.99530285.078300.622703.584802.80440HepG2FXR1
C20orf96ENSG00000196476.7376.63310264.336700.510702.498401.86450HepG2G3BP1
C20orf96ENSG00000196476.7379.22700231.241200.713604.737403.56470HepG2GEMIN5
C20orf96ENSG00000196476.7252.85310347.65610-0.459401.936101.39450HepG2GPKOW
C20orf96ENSG00000196476.7489.81590307.076300.673505.210704.36200HepG2HNRNPA1
C20orf96ENSG00000196476.7541.29750341.558800.664205.092304.17420HepG2HNRNPC
C20orf96ENSG00000196476.7522.81620267.933800.964308.767307.57630HepG2HNRNPK
C20orf96ENSG00000196476.7405.79320270.294100.586102.481701.54090HepG2KHSRP
C20orf96ENSG00000196476.7389.18240285.178800.448501.990201.42960HepG2MAGOH
C20orf96ENSG00000196476.7437.95150320.220700.451603.251802.41950HepG2PRPF4
C20orf96ENSG00000196476.7412.82480329.843800.323601.964101.48940HepG2PTBP1
C20orf96ENSG00000196476.7431.56530568.38330-0.397302.921702.31590HepG2PUM1
C20orf96ENSG00000196476.7418.26100567.95540-0.441403.040502.33660HepG2PUM2
C20orf96ENSG00000196476.7204.43240330.85060-0.694602.647801.95790HepG2RAVER1
C20orf96ENSG00000196476.7464.12820341.892600.440903.117302.46850HepG2RECQL
C20orf96ENSG00000196476.7420.46800252.744900.734205.676804.83210HepG2RPS19
C20orf96ENSG00000196476.7396.47950513.41790-0.372902.679701.98700HepG2SLBP
C20orf96ENSG00000196476.7247.59300365.40050-0.561502.128701.44580HepG2SNRNP70
C20orf96ENSG00000196476.7742.10370546.289600.441904.264103.68140HepG2SRFBP1
C20orf96ENSG00000196476.7505.59530353.325100.516902.599001.63260HepG2SRSF3
C20orf96ENSG00000196476.7347.36730528.66520-0.605905.752104.89730HepG2SRSF5
C20orf96ENSG00000196476.7290.21990374.43830-0.367602.403201.75150HepG2SRSF7
C20orf96ENSG00000196476.7206.32020291.61340-0.499203.035402.46270HepG2SRSF9
C20orf96ENSG00000196476.7616.62140474.286500.378503.114502.57760HepG2SSB
C20orf96ENSG00000196476.7486.31860329.720000.560602.709202.21280HepG2TIAL1
C20orf96ENSG00000196476.7384.61740523.10760-0.443702.789201.91300HepG2TUFM
C20orf96ENSG00000196476.7393.97330553.72300-0.491102.285501.53020HepG2UBE2L3
C20orf96ENSG00000196476.7485.68020272.773900.832204.714603.38720HepG2UPF2
C20orf96ENSG00000196476.7443.20660293.237800.595803.354502.56080HepG2XRN2
C20orf96ENSG00000196476.7303.50410421.40860-0.473503.842203.22630HepG2ZNF622
C20orf96ENSG00000196476.7486.27600317.884000.613205.652104.88600K562AGGF1
C20orf96ENSG00000196476.7487.44620330.774800.559304.058803.26680K562AKAP8L
C20orf96ENSG00000196476.7191.96110409.89270-1.094408.825107.87380K562AQR
C20orf96ENSG00000196476.7451.02020614.85370-0.447103.411002.32600K562CELF1
C20orf96ENSG00000196476.7483.48200355.924300.441803.029502.10710K562DKC1
C20orf96ENSG00000196476.7113.53840216.98860-0.934404.230602.61560K562EEF2
C20orf96ENSG00000196476.7163.18040235.08260-0.526702.531201.94690K562FXR1
C20orf96ENSG00000196476.7391.28000216.681200.852506.633605.74930K562HNRNPC
C20orf96ENSG00000196476.7487.28350351.027400.473102.844602.00630K562KIF1C
C20orf96ENSG00000196476.7513.35710393.240400.384502.240601.43660K562MBNL1
C20orf96ENSG00000196476.7410.83960275.633700.575702.795301.90660K562NAA15
C20orf96ENSG00000196476.7399.91390258.402100.630003.964902.06120K562PKM
C20orf96ENSG00000196476.7102.51090204.04590-0.993104.725003.74790K562PRPF8
C20orf96ENSG00000196476.7448.30850568.55850-0.342802.259001.39000K562PUM2
C20orf96ENSG00000196476.7459.55400328.022900.486302.866302.31570K562PUS1
C20orf96ENSG00000196476.7463.92340319.621300.537404.162803.45190K562RBM15
C20orf96ENSG00000196476.7401.10940234.847500.772202.598601.42410K562SNRNP200
C20orf96ENSG00000196476.7105.89160224.07150-1.081406.922005.81210K562SRSF1
C20orf96ENSG00000196476.7373.37530250.320200.576803.967701.94360K562UPF2
C20orf96ENSG00000196476.7360.63090279.922500.365402.236801.46910K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C20orf96 is not available on ENCORE database.





13 RBPs can affect the splicing of C20orf96 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC20orf96ENSG00000196476.7chr20-270199270317264603264722270899270948-0.192000.000540.09776excludedHepG2DKC1
SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.192000.000030.00145includedHepG2HNRNPK
SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.160000.000520.04659includedHepG2QKI
SEC20orf96ENSG00000196476.7chr20-257433257520256608256727257684257786-0.160000.003450.03937excludedHepG2U2AF2
SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.173000.000210.00319includedK562AQR
SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.177000.000190.03752includedHepG2TIA1
SEC20orf96ENSG00000196476.7chr20-270199270317264603264722270899270948-0.190000.000030.00128excludedK562U2AF1
SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.156000.000720.03612includedHepG2SF3B4
SEC20orf96ENSG00000196476.7chr20-270199270317264603264722270899270948-0.166000.000380.00882excludedK562U2AF2
SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.216000.000000.00085includedHepG2FUBP3
SEC20orf96ENSG00000196476.7chr20-270199270317264603264722270899270948-0.192000.000010.00092excludedHepG2HNRNPU
SEC20orf96ENSG00000196476.7chr20-270199270317264603264722270899270948-0.276000.000000.00000excludedHepG2HNRNPC
SEC20orf96ENSG00000196476.7chr20-2701992703172646032647222708992709480.206000.000030.00805includedHepG2KHSRP
A3SSC20orf96ENSG00000196476.7chr20-2574332576042574332575202576842577860.255000.001640.01078longerK562AQR
RIC20orf96ENSG00000196476.7chr20-270899271070270899270948271055271070-0.131000.000100.00184excludedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C20orf96 is not avaliable on ENCORE database.