CDC42SE2

General Information

Gene Name       : CDC42SE2
Gene ID             : ENSG00000158985.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDC42SE2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDC42SE2ENSG00000158985.1366.8751.1659.02ENCSR000AEF
HepG2CDC42SE2ENSG00000158985.138.6219.1713.89ENCSR985KAT
K562CDC42SE2ENSG00000158985.1321.6722.7422.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDC42SE2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDC42SE2 RNA is bound by 22 proteins.  







eCLIP assay for CDC42SE2 is not avaliable on ENCORE database.





22 proteins are bound to CDC42SE2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5130730257130730333+3'-UTR,intron-Distal5.7477982.97968K562PUM2
chr5130727562130727613+3'-UTR,intron-Distal,intron-Proximal3.790305.01462HepG2FUBP3
chr5130727578130727654+3'-UTR,intron-Distal,intron-Proximal3.318416.55643K562TIA1
chr5130729872130729938+3'-UTR,intron-Distal4.280005.10483K562IGF2BP1
chr5130727866130727916+3'-UTR,intron-Distal3.103363.29582HepG2IGF2BP1
chr5130727870130727902+3'-UTR,intron-Distal4.2215415.00618K562TIA1
chr5130695017130695074+3'-UTR3.788643.34184HepG2GRWD1
chr5130728557130728621+3'-UTR,intron-Distal3.277413.71253K562LIN28B
chr5130729606130729652+3'-UTR,intron-Distal3.021375.13250K562YBX3
chr5130729255130729320+3'-UTR,intron-Distal,intron-Proximal3.556878.42259K562YBX3
chr5130695028130695085+3'-UTR4.469144.70478HepG2BCLAF1
chr5130728915130728977+3'-UTR,intron-Distal3.205575.50923K562IGF2BP1
chr5130695107130695257+3'-UTR,CDS,intron-Proximal3.304838.77086HepG2BCLAF1
chr5130727922130727988+3'-UTR,intron-Distal,intron-Proximal5.4761219.79724K562PUM2
chr5130728684130728713+3'-UTR,intron-Distal3.962113.76862K562PUM2
chr5130728474130728524+3'-UTR,intron-Distal3.496877.46662K562TIA1
chr5130730255130730316+3'-UTR,intron-Distal3.584844.13343HepG2FUBP3
chr5130721216130721387+3'-UTR,CDS,intron-Proximal4.254963.70678K562BUD13
chr5130729201130729255+3'-UTR,intron-Distal,intron-Proximal3.300916.00087K562YBX3
chr5130599753130599859+5'-UTR,intron-Distal3.631896.14786HepG2NCBP2
chr5130651745130651843+5'-UTR,intron-Distal,intron-Proximal5.136819.79500HepG2GRWD1
chr5130651785130651840+5'-UTR,intron-Distal,intron-Proximal4.082384.66602K562DDX3X
chr5130599762130599860+5'-UTR,intron-Distal,intron-Proximal3.6565113.78207K562DDX3X
chr5130651682130651745+5'-UTR,intron-Distal3.601345.80880HepG2GRWD1
chr5130599757130599871+5'-UTR,intron-Distal,intron-Proximal3.375384.32964K562HNRNPM
chr5130726667130726760+CDS,intron-Distal,intron-Proximal4.291623.35169HepG2U2AF2
chr5130614838130614891+intron-Distal4.340509.79356K562CSTF2T
chr5130614493130614540+intron-Distal5.216088.58840K562CSTF2T
chr5130624729130624859+intron-Distal3.849665.95946K562KHSRP
chr5130614099130614189+intron-Distal4.6381619.54341K562CSTF2T
chr5130614667130614743+intron-Distal4.380247.39596K562CSTF2T
chr5130614484130614541+intron-Distal3.382214.27938HepG2ILF3
chr5130704587130704687+intron-Distal3.060243.81669K562KHDRBS1
chr5130716504130716622+intron-Distal3.892755.07626HepG2PTBP1
chr5130614667130614723+intron-Distal5.7530215.54511K562ILF3
chr5130614028130614057+intron-Distal4.383255.00655K562ILF3
chr5130614452130614488+intron-Distal4.451143.78681HepG2PCBP2
chr5130641968130642089+intron-Distal4.164654.28571K562HNRNPM
chr5130603557130603613+intron-Distal3.421354.30679K562KHSRP
chr5130614112130614185+intron-Distal4.383143.00349HepG2ILF3
chr5130641966130642007+intron-Distal4.667985.12361K562EXOSC5
chr5130614842130614890+intron-Distal3.225505.11707K562ILF3
chr5130613577130613610+intron-Distal3.299624.25110K562CSTF2T
chr5130614494130614548+intron-Distal5.190433.69238K562GTF2F1
chr5130614964130615037+intron-Distal3.399075.14864K562KHSRP
chr5130641688130641748+intron-Distal4.951866.73640K562EXOSC5
chr5130611803130611891+intron-Distal3.433287.95018K562CSTF2T
chr5130716475130716528+intron-Distal4.644334.40618K562PTBP1
chr5130614488130614538+intron-Distal5.232604.57427HepG2PCBP2
chr5130716370130716412+intron-Distal4.843325.43236K562PTBP1
chr5130614074130614187+intron-Distal5.9710731.31555K562ILF3
chr5130614114130614187+intron-Distal3.635144.48692K562GTF2F1
chr5130672593130672691+intron-Distal3.304823.72904K562EXOSC5
chr5130662679130662749+intron-Distal3.680586.25598K562KHSRP
chr5130614300130614351+intron-Distal5.2107310.47310K562CSTF2T
chr5130614497130614533+intron-Distal4.462934.97583HepG2GTF2F1
chr5130610492130610599+intron-Distal3.797375.34807K562ILF3
chr5130614981130615027+intron-Distal3.649045.55220K562CSTF2T
chr5130613862130613922+intron-Distal5.125249.79176K562ILF3
chr5130613857130613923+intron-Distal4.525656.53303HepG2ILF3
chr5130614113130614174+intron-Distal4.483664.70962HepG2GTF2F1
chr5130641834130641864+intron-Distal4.428794.80399K562EXOSC5
chr5130650671130650839+intron-Distal3.784508.47592K562EXOSC5
chr5130614306130614349+intron-Distal4.035337.56402K562ILF3
chr5130642569130642610+intron-Distal4.097303.01456K562EXOSC5
chr5130690143130690304+intron-Distal,intron-Proximal3.267564.13575K562KHSRP
chr5130716464130716554+intron-Distal4.189233.98115K562MATR3
chr5130614493130614537+intron-Distal6.5617228.59373K562ILF3
chr5130610531130610608+intron-Distal4.432095.54639K562CSTF2T
chr5130716540130716606+intron-Distal3.554053.76275K562PTBP1
chr5130611804130611899+intron-Distal3.6196310.74262K562ILF3
chr5130662302130662398+intron-Distal3.364276.24191K562KHSRP
chr5130650686130650735+intron-Distal3.968493.04182K562HNRNPM
chr5130611007130611055+intron-Distal3.140793.62708K562CSTF2T
chr5130613868130613910+intron-Distal4.635446.32269K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDC42SE2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDC42SE2 is not available on ENCORE database.

  • 80 RBPs can affect the levels of CDC42SE2.  








The Knockdown/knockout RNA-Seq assay for CDC42SE2 is not available on ENCORE database.





80 RBPs can affect the gene expression of CDC42SE2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDC42SE2ENSG00000158985.9463.27400776.22940-0.744607.492005.95450HepG2ADAR
CDC42SE2ENSG00000158985.9584.61730960.37440-0.716103.526701.95260HepG2ATP5C1
CDC42SE2ENSG00000158985.91572.547601287.135800.288803.315602.57490HepG2AUH
CDC42SE2ENSG00000158985.9386.69540651.59840-0.752805.059803.87730HepG2BCLAF1
CDC42SE2ENSG00000158985.9391.89370833.23160-1.0883025.7419024.18010HepG2CKAP4
CDC42SE2ENSG00000158985.91027.022401469.25470-0.516604.416403.63970HepG2DDX3X
CDC42SE2ENSG00000158985.91623.988201074.082500.596302.371901.46660HepG2DDX59
CDC42SE2ENSG00000158985.9513.26850997.69640-0.9589011.223709.35580HepG2DDX5
CDC42SE2ENSG00000158985.9474.84850778.51550-0.713305.616304.33990HepG2EEF2
CDC42SE2ENSG00000158985.9899.309501213.30780-0.432103.177602.54410HepG2EIF2S1
CDC42SE2ENSG00000158985.9972.59000632.028500.621705.633604.37490HepG2EIF3D
CDC42SE2ENSG00000158985.9963.801301340.86390-0.476403.371902.66780HepG2EIF4A3
CDC42SE2ENSG00000158985.9806.761801305.48830-0.694405.259604.33190HepG2EIF4B
CDC42SE2ENSG00000158985.91004.254501352.82650-0.429903.254802.50670HepG2FXR1
CDC42SE2ENSG00000158985.9423.27050562.75380-0.410902.230501.43220HepG2GEMIN5
CDC42SE2ENSG00000158985.9719.869701072.21260-0.574804.585403.77270HepG2GPKOW
CDC42SE2ENSG00000158985.9534.95910789.10130-0.560804.999604.16480HepG2HNRNPA1
CDC42SE2ENSG00000158985.9766.792801064.29400-0.473007.484306.42460HepG2HNRNPL
CDC42SE2ENSG00000158985.9810.547801023.23080-0.336202.084601.53010HepG2HNRNPLL
CDC42SE2ENSG00000158985.9594.10970761.86390-0.358802.581301.88230HepG2IGF2BP1
CDC42SE2ENSG00000158985.91068.335501353.29860-0.341102.187001.60200HepG2MAGOH
CDC42SE2ENSG00000158985.9733.203601360.88080-0.8923010.180809.03010HepG2MATR3
CDC42SE2ENSG00000158985.9624.424201392.94360-1.1575017.4617015.95980HepG2NCBP2
CDC42SE2ENSG00000158985.9950.809401240.53690-0.383702.580101.88010HepG2PABPC4
CDC42SE2ENSG00000158985.9622.20500777.69470-0.321802.601001.88460HepG2PPIL4
CDC42SE2ENSG00000158985.9502.81370789.93490-0.651709.074607.79000HepG2PRPF4
CDC42SE2ENSG00000158985.9895.927101206.67660-0.429605.903205.16470HepG2PTBP1
CDC42SE2ENSG00000158985.9840.053501105.86560-0.396603.538702.87540HepG2PUF60
CDC42SE2ENSG00000158985.9396.93430848.89180-1.0967025.4613023.94130HepG2PUS1
CDC42SE2ENSG00000158985.9595.48390828.92990-0.477201.997001.38830HepG2RAVER1
CDC42SE2ENSG00000158985.91553.538401159.013600.422604.850403.75350HepG2RBM15
CDC42SE2ENSG00000158985.91453.648201186.116500.293302.255201.64150HepG2RBM25
CDC42SE2ENSG00000158985.91099.667501342.95690-0.288303.096302.53050HepG2NELFE
CDC42SE2ENSG00000158985.91056.589901250.70630-0.243302.360701.78510HepG2RECQL
CDC42SE2ENSG00000158985.9471.70340614.94770-0.382602.412301.83340HepG2RPS19
CDC42SE2ENSG00000158985.9771.514401054.89720-0.451302.576001.80360HepG2RPS3A
CDC42SE2ENSG00000158985.9884.376501060.27690-0.261702.798902.09320HepG2SLBP
CDC42SE2ENSG00000158985.91903.143901395.077300.447908.575107.82650HepG2SRFBP1
CDC42SE2ENSG00000158985.91538.209501089.756400.497103.511402.37070HepG2SRSF3
CDC42SE2ENSG00000158985.9917.116901091.83690-0.251602.392901.80580HepG2SRSF5
CDC42SE2ENSG00000158985.9494.17280717.73180-0.538402.482801.30200HepG2STAU1
CDC42SE2ENSG00000158985.91109.72610774.607200.518602.911601.67720HepG2SUB1
CDC42SE2ENSG00000158985.9740.27980997.29150-0.429903.263102.48230HepG2TARDBP
CDC42SE2ENSG00000158985.9630.244401064.77870-0.756603.458202.27000HepG2TBRG4
CDC42SE2ENSG00000158985.91375.478901083.087800.344703.161802.27300HepG2TIA1
CDC42SE2ENSG00000158985.9687.25680847.21210-0.301902.023201.58180HepG2TIAL1
CDC42SE2ENSG00000158985.9620.71020854.82390-0.461705.504704.76070HepG2TRIM56
CDC42SE2ENSG00000158985.91326.18280918.954000.529104.827404.01080HepG2U2AF1
CDC42SE2ENSG00000158985.9434.15790672.21140-0.630702.799401.78870HepG2UPF2
CDC42SE2ENSG00000158985.9562.03020857.85640-0.610108.453407.49830HepG2UTP3
CDC42SE2ENSG00000158985.91329.51630814.825600.706205.194503.44680HepG2XRCC5
CDC42SE2ENSG00000158985.9528.41620722.44360-0.451202.232601.57570HepG2XRN2
CDC42SE2ENSG00000158985.91325.74880977.231000.439906.708705.95420HepG2ZNF622
CDC42SE2ENSG00000158985.92160.305001459.594200.5656012.4755011.36420K562AGGF1
CDC42SE2ENSG00000158985.92199.942301518.777000.534506.808705.74730K562AKAP8L
CDC42SE2ENSG00000158985.9846.719401060.57990-0.324903.347802.28950K562BCLAF1
CDC42SE2ENSG00000158985.92180.497901744.285500.321903.553102.19330K562CCDC124
CDC42SE2ENSG00000158985.91154.215401761.90330-0.610202.785801.35020K562CKAP4
CDC42SE2ENSG00000158985.91405.089301829.10530-0.380505.024803.50200K562CPEB4
CDC42SE2ENSG00000158985.91575.037201892.64950-0.265003.069902.38760K562DDX47
CDC42SE2ENSG00000158985.92001.025301634.294100.292003.423102.43500K562DKC1
CDC42SE2ENSG00000158985.91790.82000966.428600.8898011.056308.82410K562EIF3D
CDC42SE2ENSG00000158985.9840.395901038.04990-0.304702.554601.46030K562EIF4B
CDC42SE2ENSG00000158985.91011.948101341.10630-0.406303.431702.47900K562FIP1L1
CDC42SE2ENSG00000158985.91923.274801282.548500.584502.630401.94520K562G3BP2
CDC42SE2ENSG00000158985.91001.242101344.38610-0.425204.468103.10830K562HNRNPA1
CDC42SE2ENSG00000158985.92008.115401279.227200.650502.851201.61060K562HNRNPA2B1
CDC42SE2ENSG00000158985.9812.405001084.53010-0.416802.674702.08600K562HNRNPC
CDC42SE2ENSG00000158985.91268.372401710.44710-0.431404.696203.27770K562HNRNPL
CDC42SE2ENSG00000158985.92479.099001611.791500.621102.149201.43250K562KIF1C
CDC42SE2ENSG00000158985.9520.449901039.02500-0.997407.155705.57700K562KRR1
CDC42SE2ENSG00000158985.91029.374401605.51570-0.641309.515707.70170K562MATR3
CDC42SE2ENSG00000158985.92538.747201805.615000.491506.747705.20740K562MBNL1
CDC42SE2ENSG00000158985.9879.908901187.93340-0.433002.124201.35580K562METAP2
CDC42SE2ENSG00000158985.91104.055301306.34000-0.242702.347701.60170K562MTPAP
CDC42SE2ENSG00000158985.92113.250101265.606300.739504.567703.34500K562NAA15
CDC42SE2ENSG00000158985.9646.51350946.80920-0.550404.080501.79790K562PA2G4
CDC42SE2ENSG00000158985.9938.129201193.11600-0.346902.149601.41550K562PCBP3
CDC42SE2ENSG00000158985.91181.290201522.48670-0.366102.998902.14040K562PPIG
CDC42SE2ENSG00000158985.91159.55760878.231500.400803.118702.32170K562PRPF8
CDC42SE2ENSG00000158985.9683.71690972.33740-0.508103.591402.54150K562PSIP1
CDC42SE2ENSG00000158985.91084.241901562.90890-0.527506.092305.13890K562PTBP1
CDC42SE2ENSG00000158985.93299.392802501.433400.399305.313503.79720K562PUM1
CDC42SE2ENSG00000158985.91812.126901506.188800.266701.929001.46000K562PUS1
CDC42SE2ENSG00000158985.92390.283001467.571600.7037015.7266014.29560K562RBM15
CDC42SE2ENSG00000158985.91840.408001175.172200.647102.639601.45050K562SNRNP200
CDC42SE2ENSG00000158985.91127.82040917.934700.297002.408401.64230K562SYNCRIP
CDC42SE2ENSG00000158985.91239.943201495.81730-0.270702.191901.47100K562TIA1
CDC42SE2ENSG00000158985.91537.770601283.831400.260302.167901.45730K562U2AF2
CDC42SE2ENSG00000158985.9956.938401316.84410-0.460604.972603.78310K562WDR3
CDC42SE2ENSG00000158985.91595.413002167.91390-0.442405.304903.51600K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDC42SE2 is not available on ENCORE database.





1 RBPs can affect the splicing of CDC42SE2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCDC42SE2ENSG00000158985.9chr5+1306516331306518371306516681306518371305997671305998590.052000.006300.03542longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDC42SE2 is not avaliable on ENCORE database.