AMDHD1

General Information

Gene Name       : AMDHD1
Gene ID             : ENSG00000139344.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AMDHD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AMDHD1ENSG00000139344.70.210.190.20ENCSR000AEF
HepG2AMDHD1ENSG00000139344.712.2310.9811.61ENCSR985KAT
K562AMDHD1ENSG00000139344.70.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AMDHD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AMDHD1 RNA is bound by 7 proteins.  







eCLIP assay for AMDHD1 is not avaliable on ENCORE database.





7 proteins are bound to AMDHD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr129635435696354400+3'-UTR,CDS3.174133.18660HepG2PABPN1
chr129635951296359556+3'-UTR,CDS3.337627.74581HepG2BCLAF1
chr129636012596360157+3'-UTR,CDS,intron-Proximal5.111847.49561HepG2BCLAF1
chr129635950596359554+3'-UTR,CDS4.083263.44763HepG2LSM11
chr129635040596350481+CDS,intron-Proximal4.694965.54524HepG2SF3B4
chr129635046796350544+CDS3.377084.75490HepG2GRWD1
chr129634497796345043+intron-Distal4.477874.85866HepG2QKI
chr129635041496350457+intron-Proximal3.849943.16051HepG2PPIG
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AMDHD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AMDHD1 is not available on ENCORE database.

  • 116 RBPs can affect the levels of AMDHD1.  








The Knockdown/knockout RNA-Seq assay for AMDHD1 is not available on ENCORE database.





116 RBPs can affect the gene expression of AMDHD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AMDHD1ENSG00000139344.3223.23820320.53830-0.521902.645401.59430HepG2AATF
AMDHD1ENSG00000139344.3155.61470437.74130-1.4921014.3736012.51360HepG2ABCF1
AMDHD1ENSG00000139344.3150.25370394.71250-1.3934020.2743018.96580HepG2ACO1
AMDHD1ENSG00000139344.3439.690901014.23480-1.2058014.7404013.61160HepG2AKAP1
AMDHD1ENSG00000139344.3318.32070457.26530-0.522602.749401.71370HepG2AKAP8
AMDHD1ENSG00000139344.3518.85360396.518100.387802.944902.15480HepG2AKAP8L
AMDHD1ENSG00000139344.3449.38790203.751401.141109.604208.06030HepG2BCLAF1
AMDHD1ENSG00000139344.3524.56390354.700400.564403.965303.06580HepG2CALR
AMDHD1ENSG00000139344.3376.76080541.10870-0.522302.709801.74700HepG2CCAR1
AMDHD1ENSG00000139344.3569.61310797.30730-0.485203.372502.52390HepG2CIRBP
AMDHD1ENSG00000139344.3626.94360394.568000.668008.978207.91120HepG2CKAP4
AMDHD1ENSG00000139344.3539.42200383.245900.493002.044301.39230HepG2CNOT7
AMDHD1ENSG00000139344.3546.11690228.418701.2574014.8805013.43920HepG2CPSF6
AMDHD1ENSG00000139344.3414.08240267.019900.632905.217303.81880HepG2YBX3
AMDHD1ENSG00000139344.351.73630144.84060-1.485207.651406.00290HepG2CSTF2
AMDHD1ENSG00000139344.3398.68610512.29030-0.361702.494301.87790HepG2CELF1
AMDHD1ENSG00000139344.3933.95270550.855100.7616015.3264013.82220HepG2DAZAP1
AMDHD1ENSG00000139344.3199.49510353.44420-0.825106.051905.09320HepG2DDX21
AMDHD1ENSG00000139344.3396.75350174.652401.183709.946707.58550HepG2DDX28
AMDHD1ENSG00000139344.3650.65070971.61170-0.578504.654303.85930HepG2DDX3X
AMDHD1ENSG00000139344.3602.47940401.143100.586704.742103.06950HepG2DDX47
AMDHD1ENSG00000139344.3460.58640259.386100.828302.335401.43870HepG2DDX59
AMDHD1ENSG00000139344.3592.57100401.223400.562502.690601.69130HepG2DDX5
AMDHD1ENSG00000139344.3281.25880834.51340-1.5690021.9298020.41230HepG2DDX6
AMDHD1ENSG00000139344.3598.81250252.884901.2435010.799109.02320HepG2DHX30
AMDHD1ENSG00000139344.3220.45700377.61770-0.776406.863305.88780HepG2DKC1
AMDHD1ENSG00000139344.3636.25020262.192601.2789023.0612021.24620HepG2DNAJC21
AMDHD1ENSG00000139344.3330.91760259.878700.348502.032401.45690HepG2DNAJC2
AMDHD1ENSG00000139344.3214.30600368.25640-0.781004.889203.69440HepG2EEF2
AMDHD1ENSG00000139344.3496.17900325.615000.607603.557602.28990HepG2AGO1
AMDHD1ENSG00000139344.31103.24950802.358200.459303.402402.74900HepG2EIF2S1
AMDHD1ENSG00000139344.3199.09100298.93230-0.586402.338901.50140HepG2EIF3D
AMDHD1ENSG00000139344.3217.93990333.88530-0.615403.903202.64720HepG2EIF3G
AMDHD1ENSG00000139344.3432.94790863.27260-0.995608.598207.41860HepG2EIF4B
AMDHD1ENSG00000139344.31107.29700543.437501.0268023.9984022.05170HepG2EIF4G1
AMDHD1ENSG00000139344.3871.97030520.581000.744108.012406.65640HepG2EIF4G2
AMDHD1ENSG00000139344.3538.23590379.171100.505303.201302.02810HepG2ESF1
AMDHD1ENSG00000139344.3244.94710385.65250-0.654804.738603.65050HepG2EWSR1
AMDHD1ENSG00000139344.3521.17150336.909800.629305.150903.66260HepG2FASTKD2
AMDHD1ENSG00000139344.381.82190442.00590-2.4335030.7842028.74170HepG2FIP1L1
AMDHD1ENSG00000139344.3321.73970191.899300.745404.182302.64530HepG2FKBP4
AMDHD1ENSG00000139344.3636.66590228.809301.476308.424506.66760HepG2FTO
AMDHD1ENSG00000139344.3340.70380894.52590-1.3926021.2015019.47000HepG2FXR1
AMDHD1ENSG00000139344.3128.56540266.15770-1.049806.916505.50700HepG2GEMIN5
AMDHD1ENSG00000139344.3165.75280383.14970-1.2089010.143008.15510HepG2GNB2L1
AMDHD1ENSG00000139344.3515.17900258.931600.992408.459407.38200HepG2GPKOW
AMDHD1ENSG00000139344.3110.44260264.70450-1.261108.862707.80270HepG2HNRNPA1
AMDHD1ENSG00000139344.3902.61010506.243300.8342014.6247012.82480HepG2HNRNPA2B1
AMDHD1ENSG00000139344.3489.96210331.959500.561603.027301.44400HepG2HNRNPD
AMDHD1ENSG00000139344.3359.86590215.385900.740406.851905.79090HepG2HNRNPF
AMDHD1ENSG00000139344.3232.89180840.12930-1.8510034.7942032.60200HepG2HNRNPK
AMDHD1ENSG00000139344.31120.51730501.792001.1589035.7128033.62420HepG2HNRNPL
AMDHD1ENSG00000139344.3696.94610247.103001.4958021.6684020.16680HepG2HNRNPLL
AMDHD1ENSG00000139344.3369.86810292.488600.338501.923901.40930HepG2HNRNPU
AMDHD1ENSG00000139344.3361.78030212.096100.770306.419705.35980HepG2IGF2BP1
AMDHD1ENSG00000139344.3413.18460298.767300.467703.470902.65690HepG2ILF2
AMDHD1ENSG00000139344.3571.21870373.604900.612403.357001.88350HepG2ILF3
AMDHD1ENSG00000139344.3589.30860365.081200.690704.744103.12710HepG2KHDRBS1
AMDHD1ENSG00000139344.3579.43830360.780200.683409.037507.28890HepG2KIF1C
AMDHD1ENSG00000139344.3485.33400894.83750-0.882609.477708.27990HepG2MAGOH
AMDHD1ENSG00000139344.3585.94350899.87440-0.619004.639103.83930HepG2MATR3
AMDHD1ENSG00000139344.3206.59110357.69640-0.792005.916104.77460HepG2MSI2
AMDHD1ENSG00000139344.3649.14070252.010401.364903.733002.59600HepG2MTPAP
AMDHD1ENSG00000139344.3429.61760921.09480-1.1003013.6749012.33390HepG2NCBP2
AMDHD1ENSG00000139344.3638.84820219.103301.5438022.0547020.22860HepG2NSUN2
AMDHD1ENSG00000139344.3641.65730820.40190-0.354502.012001.38800HepG2PABPC4
AMDHD1ENSG00000139344.3580.96690829.97320-0.514604.927204.15420HepG2PCBP1
AMDHD1ENSG00000139344.3585.36440360.228200.700305.087502.86320HepG2PHF6
AMDHD1ENSG00000139344.3433.47050260.876400.732507.105605.96580HepG2PPIL4
AMDHD1ENSG00000139344.3363.29020249.590500.541504.012303.09920HepG2PRPF4
AMDHD1ENSG00000139344.3239.05510393.76450-0.720003.713002.31020HepG2PRPF6
AMDHD1ENSG00000139344.3421.67740844.46900-1.0019013.7350012.69860HepG2PTBP1
AMDHD1ENSG00000139344.3833.34900521.415600.676407.315006.40520HepG2PUF60
AMDHD1ENSG00000139344.3292.82800553.50000-0.9185014.1476013.02410HepG2PUM1
AMDHD1ENSG00000139344.3799.32220553.099200.531105.243304.33390HepG2PUM2
AMDHD1ENSG00000139344.3225.23660361.45770-0.682402.762002.05830HepG2RAVER1
AMDHD1ENSG00000139344.3726.97970544.094500.418003.466602.51590HepG2RBM15
AMDHD1ENSG00000139344.3183.11230500.22720-1.4499011.6690010.75940HepG2RBM22
AMDHD1ENSG00000139344.3539.85220830.10830-0.620706.800805.78470HepG2RBM25
AMDHD1ENSG00000139344.3663.18190360.472000.879406.199003.11330HepG2RBM34
AMDHD1ENSG00000139344.3190.00300939.86260-2.3064039.7080038.19260HepG2NELFE
AMDHD1ENSG00000139344.3561.19220875.26420-0.641207.719906.76680HepG2RECQL
AMDHD1ENSG00000139344.3395.26500231.986500.768706.037505.08550HepG2RPLP0
AMDHD1ENSG00000139344.3546.75240355.086400.622603.313402.27900HepG2RPS10
AMDHD1ENSG00000139344.3164.10680290.88510-0.825805.486604.65280HepG2RPS19
AMDHD1ENSG00000139344.3869.86390384.742801.1768012.3903010.75380HepG2RPS3A
AMDHD1ENSG00000139344.3447.82050260.473700.781708.715007.66730HepG2SAFB2
AMDHD1ENSG00000139344.3546.12890362.304900.591903.478802.02210HepG2SART3
AMDHD1ENSG00000139344.3159.33600633.26010-1.9907027.2258025.05760HepG2SF3A3
AMDHD1ENSG00000139344.3338.59810244.583900.469102.204201.56940HepG2SF3B1
AMDHD1ENSG00000139344.3510.55120879.30850-0.784308.914307.94470HepG2SF3B4
AMDHD1ENSG00000139344.3252.67010557.74720-1.142403.298901.69120HepG2SFPQ
AMDHD1ENSG00000139344.3829.78370499.944700.7309012.6745011.35980HepG2SLBP
AMDHD1ENSG00000139344.3199.83160303.75590-0.604104.323103.55040HepG2SMN1
AMDHD1ENSG00000139344.3199.44940368.62250-0.886105.706604.29520HepG2SMNDC1
AMDHD1ENSG00000139344.31509.46090272.142202.4715043.9049040.92670HepG2SNRNP70
AMDHD1ENSG00000139344.3367.26790565.01300-0.621503.482102.93990HepG2SRFBP1
AMDHD1ENSG00000139344.3340.80990219.587900.634103.093201.37660HepG2SRP68
AMDHD1ENSG00000139344.3253.69140917.76390-1.8550029.0389027.86530HepG2SRSF1
AMDHD1ENSG00000139344.3164.63490263.17120-0.676702.734201.74000HepG2SRSF3
AMDHD1ENSG00000139344.3358.96370514.81520-0.520204.570703.80090HepG2SRSF5
AMDHD1ENSG00000139344.3393.19080211.601000.893809.920508.74390HepG2SRSF7
AMDHD1ENSG00000139344.346.73350490.60850-3.3920031.3269030.03050HepG2SSB
AMDHD1ENSG00000139344.3474.29980298.434200.668305.295804.01500HepG2SUPT6H
AMDHD1ENSG00000139344.3349.02600229.510000.604702.803802.12330HepG2SUPV3L1
AMDHD1ENSG00000139344.3679.83970824.80050-0.278902.199501.68970HepG2TAF15
AMDHD1ENSG00000139344.3643.18300240.845801.4170020.4759018.84160HepG2TARDBP
AMDHD1ENSG00000139344.3392.65110539.17710-0.457502.266201.51350HepG2UBE2L3
AMDHD1ENSG00000139344.3294.03720135.578101.116808.576107.23830HepG2UCHL5
AMDHD1ENSG00000139344.3449.23390561.60430-0.322102.448501.78460HepG2UPF1
AMDHD1ENSG00000139344.3718.00480577.255100.314702.417901.42750HepG2UTP18
AMDHD1ENSG00000139344.3139.50700542.20780-1.9585038.3871036.52750HepG2UTP3
AMDHD1ENSG00000139344.3645.71200344.609800.905807.198605.43290HepG2XPO5
AMDHD1ENSG00000139344.3331.21680246.299700.427302.626801.97000HepG2ZC3H8
AMDHD1ENSG00000139344.3507.52940617.65810-0.283302.234701.72830HepG2ZNF622
AMDHD1ENSG00000139344.3571.74260361.151200.662704.174902.54910HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AMDHD1 is not available on ENCORE database.





5 RBPs can affect the splicing of AMDHD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAMDHD1ENSG00000139344.3chr12+963486889634875396346494963466019635046296350474-0.218000.000900.02460excludedHepG2HNRNPK
SEAMDHD1ENSG00000139344.3chr12+9634868896348753963464949634660196350462963504740.246000.000210.00369includedHepG2U2AF2
SEAMDHD1ENSG00000139344.3chr12+9634868896348753963464949634660196349460963496000.227000.000470.06292includedHepG2HNRNPUL1
SEAMDHD1ENSG00000139344.3chr12+9634946096349600963486889634875396350462963507400.324000.000160.04528includedHepG2FUBP3
MXEAMDHD1ENSG00000139344.3chr12+96348688963487539635046296350740963464949634660196354175963544010.278000.003910.040331includedHepG2SFPQ
MXEAMDHD1ENSG00000139344.3chr12+96348688963487539635046296350740963464949634660196354175963544010.180000.013520.068951includedHepG2U2AF2
MXEAMDHD1ENSG00000139344.3chr12+96348688963487539634946096349600963464949634660196350462963507400.078000.000890.017431includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AMDHD1 is not avaliable on ENCORE database.